PreprintCited by 14Glycosylation and Glycoproteins ResearchBiochemical and Structural CharacterizationBacterial Genetics and Biotechnology

The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.

Glycosylation of serine/threonine-rich intrinsically disordered regions of membrane-associated proteins in streptococci

Open access

Preprint — published as 10.1038/s41467-025-58692-8

Abstract

Proteins harboring intrinsically disordered regions (IDRs) lacking stable secondary or tertiary structures are abundant across the three domains of life. These regions have not been systematically studied in prokaryotes. Our genome-wide analysis identifies extracytoplasmic serine/threonine-rich IDRs in several biologically important membrane-associated proteins in streptococci. We demonstrate that these IDRs are glycosylated with glucose by glycosyltransferases GtrB and PgtC2 in Streptococcus pyogenes and Streptococcus pneumoniae , and with N-acetylgalactosamine by a Pgf-dependent mechanism in Streptococcus mutans . The absence of glycosylation leads to a defect in biofilm formation under ethanol-stressed conditions in S. mutans . We link this phenotype to the C-terminal IDR of the post-translocation chaperone PrsA. Our data reveal that O -linked glycosylation protects the IDR-containing proteins from proteolytic degradation and is critical for the biological function of PrsA in biofilm formation.

Overview

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Integrity signals

Registry

Crossref · 10.1101/2024.05.05.592596

Cites

1 of 1 references verified0 citation errors · 0 not checkable

Statistics

Verification

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

A few free checks a day · papers already verified open instantly · results are public

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

Citations

Cites

Flagged first, then by citations

Research works printed but not linked: 114

  1. 10.1186/s12964-022-00821-7 · DOI · Paper page
  2. 10.1007/s00018-014-1661-9 · DOI
  3. 2024, Functional unfoldomics: Roles of intrinsic disorder in protein (multi)functionality, Adv Protein Chem Struct Biol, 138, 179
  4. 10.1016/j.jmb.2004.02.002 · DOI
  5. 2015, Paradoxes and wonders of intrinsic disorder: Prevalence of exceptionality, Intrinsically Disord Proteins, 3, e1065029, 10.1080/21690707.2015.1065029 · DOI
  6. 10.1021/cr400713r · DOI · Paper page
  7. 10.1016/j.ceb.2022.02.002 · DOI
  8. 2021, Intrinsically disordered protein regions at membrane contact sites, Biochimica et biophysica acta Molecular and cell biology of lipids, 1866, 159020, 10.1016/j.bbalip.2021.159020 · DOI
  9. 10.1111/febs.15429 · DOI
  10. 10.1042/bst20200467 · DOI · Paper page
  11. 10.1093/jmcb/mjab010 · DOI
  12. 10.1016/j.sbi.2014.05.007 · DOI
  13. 2001, Size of Unfolded and Dissociated Subunits versus that of Native Multimeric Proteins, J Biol Phys, 27, 59, 10.1023/A:1011826525684 · DOI
  14. 10.1021/acs.jpcb.3c00698 · DOI
  15. 10.1038/ncomms8875 · DOI
  16. 2024, Synthetic intrinsically disordered protein fusion tags that enhance protein solubility, Nat Commun, 15, 3727, 10.1038/s41467-024-47519-7 · DOI
  17. 10.1021/bi300653m · DOI
  18. 10.1021/cr400525m · DOI
  19. 10.3390/ijms11124991 · DOI
  20. 2018, The impact of O-glycan chemistry on the stability of intrinsically disordered proteins, Chem Sci, 9, 3710, 10.1039/C7SC05016J · DOI
  21. 10.1016/j.cbpa.2023.102314 · DOI
  22. 2023, Glycosylation and Crowded Membrane Effects on Influenza Neuraminidase Stability and Dynamics, J Phys Chem Lett, 14, 9926, 10.1021/acs.jpclett.3c02524 · DOI
  23. 10.1080/07391102.2012.675145 · DOI
  24. 10.1101/gad.349895.122 · DOI
  25. 2021, Disorder is a critical component of lipoprotein sorting in Gram-negative bacteria, Nature chemical biology, 17, 1093, 10.1038/s41589-021-00845-z · DOI
  26. 10.1371/journal.pbio.3001906 · DOI
  27. 10.1038/s41467-022-33221-z · DOI
  28. 10.1038/s41586-019-0880-5 · DOI
  29. 10.1074/jbc.M116.747089 · DOI
  30. 10.1111/mmi.12279 · DOI
  31. 10.1186/s12964-015-0125-7 · DOI
  32. 2021, Entropy-driven translocation of disordered proteins through the Gram-positive bacterial cell wall, Nature microbiology, 6, 1055, 10.1038/s41564-021-00942-8 · DOI
  33. 10.1093/femsre/fuw036 · DOI
  34. 2023, Involvement of the Streptococcus mutans PgfE and GalE 4-epimerases in protein glycosylation, carbon metabolism, and cell division, Glycobiology, 33, 245, 10.1093/glycob/cwad004 · DOI
  35. 2018, Characterization of the pgf operon involved in the posttranslational modification of Streptococcus mutans surface proteins, Scientific reports, 8, 4705, 10.1038/s41598-018-23170-3 · DOI
  36. 2024, Post-translational modification by the Pgf glycosylation machinery modulates Streptococcus mutans OMZ175 physiology and virulence, Mol Microbiol, 122, 133, 10.1111/mmi.15190 · DOI
  37. Lemos JA , et al. The Biology of Streptococcus mutans. Microbiology spectrum 7, (2019). · DOI
  38. 2022, The Phosphatase Bph and Peptidyl-Prolyl Isomerase PrsA Are Required for Gelatinase Expression and Activity in Enterococcus faecalis, J Bacteriol, 204, e0012922, 10.1128/jb.00129-22 · DOI
  39. 10.1080/21505594.2021.1982501 · DOI
  40. 2019, Thermosensitive PBP2a requires extracellular folding factors PrsA and HtrA1 for Staphylococcus aureus MRSA beta-lactam resistance, Commun Biol, 2, 417, 10.1038/s42003-019-0667-0 · DOI
  41. 10.1111/j.1365-2958.2010.07188.x · DOI
  42. 10.1074/jbc.M301244200 · DOI
  43. 2014, Listeria monocytogenes virulence factor secretion: don’t leave the cell without a chaperone, Frontiers in cellular and infection microbiology, 4, 13
  44. 2022, Streptococcus mutans PrsA mediates AtlA secretion contributing to extracellular DNA release and biofilm formation in the pathogenesis of infective endocarditis, Virulence, 13, 1379, 10.1080/21505594.2022.2105351 · DOI
  45. 10.1128/IAI.00532-10 · DOI
  46. 2024, Streptococcus pneumoniae secretion chaperones PrsA, SlrA, and HtrA are required for competence, antibiotic resistance, colonization, and invasive disease, Infect Immun, 92, e0049023, 10.1128/iai.00490-23 · DOI
  47. 10.1002/pmic.201700195 · DOI
  48. 10.1038/ncomms10175 · DOI
  49. 10.1074/jbc.M117.815910 · DOI
  50. 2025, Structure and mechanism of biosynthesis of Streptococcus mutans cell wall polysaccharide, Nat Commun, 16, 954, 10.1038/s41467-025-56205-1 · DOI
  51. 2021, Modification of cell wall polysaccharide guides cell division in Streptococcus mutans, Nature chemical biology, 17, 878, 10.1038/s41589-021-00803-9 · DOI
  52. Baba T , et al. Construction of Escherichia coli K-12 in-frame, single-gene knockout mutants: the Keio collection. Mol Syst Biol 2, 2006 0008 (2006). · DOI · Paper page
  53. 2019, Discovery of glycerol phosphate modification on streptococcal rhamnose polysaccharides, Nature chemical biology, 15, 463, 10.1038/s41589-019-0251-4 · DOI
  54. 1992, Energetics of lectin-carbohydrate binding. A microcalorimetric investigation of concanavalin A-oligomannoside complexation, J Biol Chem, 267, 22907, 10.1016/S0021-9258(18)50033-8 · DOI
  55. 10.1021/bi00171a014 · DOI
  56. 10.1016/J.SBI.2023.102547 · DOI
  57. 10.1074/jbc.RA117.001614 · DOI
  58. 10.1371/journal.ppat.1007348 · DOI
  59. Mikkat S , Kreutzer M , Patenge N . Dynamic Protein Phosphorylation in Streptococcus pyogenes during Growth, Stationary Phase, and Starvation. Microorganisms 12, (2024). · DOI
  60. 10.1128/IAI.05360-11 · DOI
  61. 10.1038/s41586-021-03828-1 · DOI · Paper page
  62. 10.1073/pnas.2304302120 · DOI · Paper page
  63. 10.1186/s12859-022-04873-x · DOI
  64. Nambiar A , Forsyth JM , Liu S , Maslov S . DR-BERT: A protein language model to annotate disordered regions. Structure, (2024). · DOI
  65. 10.1371/journal.pone.0101229 · DOI
  66. 10.1093/nar/gkv485 · DOI
  67. De A , et al. Deficiency of RgpG causes major defects in cell division and biofilm formation, and deficiency of LytR-CpsA-Psr family proteins leads to accumulation of cell wall antigens in culture medium by Streptococcus mutans . Appl Environ Microbiol 83, (2017). · DOI
  68. 10.1111/1462-2920.15008 · DOI
  69. 10.1038/nature13966 · DOI
  70. 10.1128/mBio.01700-14 · DOI
  71. 10.1038/ncomms12071 · DOI
  72. 10.1111/mmi.14969 · DOI
  73. 10.1016/j.ejcb.2023.151380 · DOI
  74. 10.1002/pro.4496 · DOI
  75. 10.1111/j.1742-4658.2010.07684.x · DOI
  76. 10.1101/gr.849004 · DOI
  77. 10.1073/pnas.0500879102 · DOI
  78. 2015, PBP1a-deficiency causes major defects in cell division, growth and biofilm formation by Streptococcus mutans, PLoS One, 10, e0124319, 10.1371/journal.pone.0124319 · DOI
  79. 10.1099/mic.0.072884-0 · DOI
  80. 10.1128/IAI.01167-09 · DOI
  81. 2023, Regulatory mechanisms of exopolysaccharide synthesis and biofilm formation in Streptococcus mutans, J Oral Microbiol, 15, 2225257, 10.1080/20002297.2023.2225257 · DOI
  82. 2020, Environmental stress perception activates structural remodeling of extant Streptococcus mutans biofilms, NPJ biofilms and microbiomes, 6, 17, 10.1038/s41522-020-0128-z · DOI
  83. 10.1128/AEM.01015-09 · DOI
  84. 10.1128/JB.00825-07 · DOI
  85. 10.1002/bip.10020 · DOI
  86. 10.1139/cjc-2015-0594 · DOI
  87. 2021, Modifications of cell wall polymers in Gram-positive bacteria by multi-component transmembrane glycosylation systems, Current opinion in microbiology, 60, 24, 10.1016/j.mib.2021.01.007 · DOI
  88. 10.1128/jb.177.2.326-335.1995 · DOI
  89. 10.1074/jbc.M114.622910 · DOI
  90. 10.1111/mmi.13367 · DOI
  91. 10.1016/j.tibs.2012.08.006 · DOI
  92. 10.1002/(SICI)1097-0134(19980801)32:2<223::AID-PROT8>3.0.CO;2-L · DOI
  93. 2024, N-glycosylation as a eukaryotic protective mechanism against protein aggregation, Sci Adv, 10, eadk8173, 10.1126/sciadv.adk8173 · DOI · Paper page
  94. 10.1038/nchembio.1651 · DOI
  95. 10.1074/jbc.M111.292235 · DOI
  96. Armbruster KM , Meredith TC . Identification of the Lyso-Form N-Acyl Intramolecular Transferase in Low-GC Firmicutes. J Bacteriol 199, (2017). · DOI
  97. 10.1128/JB.01148-06 · DOI
  98. 2018, Deep genome annotation of the opportunistic human pathogen Streptococcus pneumoniae D39, Nucleic acids research, 46, 9971
  99. 10.1111/mmi.13366 · DOI
  100. Le Breton Y , McIver KS . Genetic manipulation of Streptococcus pyogenes (the Group A Streptococcus, GAS). Current protocols in microbiology 30, Unit 9D 3 (2013). · DOI
  101. Hooven TA , Bonakdar M , Chamby AB , Ratner AJ . A Counterselectable Sucrose Sensitivity Marker Permits Efficient and Flexible Mutagenesis in Streptococcus agalactiae. Appl Environ Microbiol 85, (2019). · DOI
  102. 10.1111/j.1365-2958.2007.06082.x · DOI
  103. 10.1111/mmi.12745 · DOI
  104. 10.1128/AEM.67.11.5190-5196.2001 · DOI
  105. 10.1111/mmi.13847 · DOI
  106. 10.1038/s41467-022-28257-0 · DOI
  107. 10.1128/AEM.01011-09 · DOI
  108. 10.1073/pnas.0604521103 · DOI
  109. 10.1021/ac950914h · DOI
  110. 10.1038/s41467-018-08056-2 · DOI
  111. 10.1073/pnas.1119172109 · DOI
  112. 10.1111/mmi.13613 · DOI
  113. 10.1093/nar/gky497 · DOI
  114. Nambiar A , Forsyth JM , Liu S , Maslov S . DR-BERT: A Protein Language Model to Annotate Disordered Regions. bioarxiv, (2023). · DOI

Metadata

Authors
Rahman, M. M., Zamakhaeva, S., Rush, J. S., Chaton, C. T., Kenner, C. W., Hla, Y. M., Tsui, H.-C. T., Uversky, V. N., Winkler, M. E., Korotkov, K. V., & Korotkova, N.
Affiliations
  • University of Kentucky (US)
  • Indiana University Bloomington (US)
  • University of South Florida (US)
Corresponding author
Korotkova, Natalia
Venue
Nature Communications
Publisher
openRxiv
Published
2024-05-05
Volume
16
Issue
1
Pages
4011-4011
ISSN
2041-1723 (ISSN-L)
OpenAlex
W4409923212
Cited by
14
References
1
Citations by year
2026: 8 · 2025: 5 · 2024: 1
FWCI
3.91
Type
journal article
Language
en
Open access
Locations
  • Nature Communications (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by-nc-nd)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PubMed Central (submittedVersion, cc-by-nc-nd)
  • UKnowledge (University of Kentucky) (submittedVersion)
  • RePEc: Research Papers in Economics (submittedVersion)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
Funders
  • Hypothesis Fund
  • U.S. Department of Health and Human Services (R35GM131767, R01DE028916)
  • Division of Intramural Research, National Institute of Allergy and Infectious Diseases (R21AI149366)
  • National Taiwan University
  • National Institutes of Health (5r21ai146945-02)
  • National Institute of General Medical Sciences (R35GM131767)
  • National Institute of Allergy and Infectious Diseases (R21AI149366)
  • National Institute of Dental and Craniofacial Research (R01DE028916)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Glycosylation and Glycoproteins Research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Biochemical and Structural Characterization
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
Keywords
intrinsically disordered regions, O-glycosylation, membrane-associated proteins, Streptococcus, Streptococcus pyogenes, Streptococcus pneumoniae, Streptococcus mutans, N-acetylgalactosamine, PrsA, biofilm formation, ethanol stress, proteolysis

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review