The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
New components of the community based DNA-repair mechanism in Sulfolobales
Open accessPreprint — published as 10.1093/femsml/uqaf002 · Paper page
Abstract
After exposure to UV light, Sulfolobus acidocaldarius cells aggregate in a species-specific manner to exchange DNA and repair double-strand breaks via homologous recombination. The formation of cell-cell interactions is mediated by Ups pili. DNA exchange subsequently occurs through the Ced system, which imports DNA. To identify novel players in these processes, we investigated several genes upregulated after UV exposure by creating in-frame deletion mutants and performing cell aggregation and DNA exchange assays. This led to the identification of two novel components involved in the Ups and Ced systems: UpsC, a minor pilin of the Ups pili, and CedD, a VirD4-like ATPase essential for DNA import. Altogether, these findings provide new insights into the fascinating DNA damage response of Sulfolobales.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Varadi, M., Bertoni, D., Magana, P., Paramval, U., Pidruchna, I., Radhakrishnan, M., Tsenkov, M., Nair, S., Mirdita, M., Yeo, J., et al. (2024) · Nucleic Acids Research · doi:10.1093/nar/gkad1011 · Cited by 2,052
Flagged first, then by citations
Research works printed but not linked: 45
- 10.1111/j.1365-2958.2011.07861.x · DOI
- 2006, Protein secretion in the Archaea: Multiple paths towards a unique cell surface, Nature Reviews Microbiology, 4, 7
- 10.1006/jmbi.1990.9999 · DOI · Paper page
- 10.1038/s41467-023-39037-9 · DOI
- 1972, Sulfolobus: A new genus of sulfur-oxidizing bacteria living at low pH and high temperature, Archiv Für Mikrobiologie, 84, 54, 10.1007/BF00408082 · DOI
- 2024, Adhesion pilus retraction powers twitching motility in the thermoacidophilic crenarchaeon Sulfolobus acidocaldarius, Nature Communications, 15, 5051, 10.1038/s41467-024-49101-7 · DOI
- Chauhan, S. M. , Poudel, S. , Rychel, K. , Lamoureux, C. , Yoo, R. , Al Bulushi, T. , Yuan, Y. , Palsson, B. O. , & Sastry, A. V. (2021). Machine Learning Uncovers a Data-Driven Transcriptional Regulatory Network for the Crenarchaeal Thermoacidophile Sulfolobus acidocaldarius. Frontiers in Microbiology, 12. · DOI
- 10.1128/ecosalplus.ESP-0020–2015 · DOI
- 10.1146/annurev.micro.60.080805.142139 · DOI
- 2024, Structural and functional diversity of type IV secretion systems, Nature Reviews Microbiology, 22, 170, 10.1038/s41579-023-00974-3 · DOI
- 10.1093/nar/gky236 · DOI
- 10.1128/JB.00424-10 · DOI
- 10.1111/j.1365-2958.2008.06459.x · DOI
- 10.1128/JB.01016-07 · DOI
- 10.1038/nrmicro2218 · DOI
- 2024, CryoEM reveals the structure of an archaeal pilus involved in twitching motility, Nature Communications, 15, 5050, 10.1038/s41467-024-45831-w · DOI · Paper page
- 10.1186/gb-2007-8-10-r220 · DOI
- 10.1128/jb.178.11.3207-3211.1996 · DOI
- 10.1046/j.1365-2958.1998.00853.x · DOI
- 10.1128/JB.185.4.1266-1272.2003 · DOI
- Gupta, R. , & Brunak, S. (2002). Prediction of glycosylation across the human proteome and the correlation to protein function. Pacific Symposium on Biocomputing. Pacific Symposium on Biocomputing, 310–322.
- Hallgren, J. , Tsirigos, K. D. , Pedersen, M. D. , Armenteros, J. J. A. , Marcatili, P. , Nielsen, H. , Krogh, A. , & Winther, O. (2022). DeepTMHMM predicts alpha and beta transmembrane proteins using deep neural networks (p. 2022.04.08.487609). bioRxiv. · DOI
- Huang, Q. , Lin, Z. , Wu, P. , Ni, J. , & Shen, Y. (2020). Phosphoproteomic Analysis Reveals Rio1-Related Protein Phosphorylation Changes in Response to UV Irradiation in Sulfolobus islandicus REY15A. Frontiers in Microbiology, 11. · DOI
- 10.1093/nar/gky1085 · DOI
- 10.1093/nar/gkh828 · DOI
- 10.1007/s00430-019-00642-5 · DOI
- 2008, Structure of the GspK–GspI–GspJ complex from the enterotoxigenic Escherichia coli type 2 secretion system, Nature Structural & Molecular Biology, 15, 462, 10.1038/nsmb.1426 · DOI
- 2017, A conserved hexanucleotide motif is important in UV-inducible promoters in Sulfolobus acidocaldarius, Microbiology (Reading, England), 163, 778, 10.1099/mic.0.000455 · DOI
- 2015, N-Glycosylation of the archaellum filament is not important for archaella assembly and motility, although N-Glycosylation is essential for motility in Sulfolobus acidocaldarius, Biochimie, 118, 294, 10.1016/j.biochi.2014.10.018 · DOI
- 10.1186/1471-2105-14-4 · DOI
- Piepenbrink, K. H. (2019). DNA Uptake by Type IV Filaments. Frontiers in Molecular Biosciences, 6. · DOI
- 10.1093/nar/gkab1112 · DOI · Paper page
- 2012, Fiji: An open-source platform for biological-image analysis, Nature Methods, 9, 676, 10.1038/nmeth.2019 · DOI · Paper page
- 10.1093/nar/gky527 · DOI
- 2024, Perturbed N-glycosylation of Halobacterium salinarum archaellum filaments leads to filament bundling and compromised cell motility, Nature Communications, 15, 5841, 10.1038/s41467-024-50277-1 · DOI
- 2019, Participation of UV-regulated Genes in the Response to Helix-distorting DNA Damage in the Thermoacidophilic Crenarchaeon Sulfolobus acidocaldarius, Microbes and Environments, 34, 363, 10.1264/jsme2.ME19055 · DOI
- 10.1128/JB.01547-06 · DOI
- 10.1016/j.jmb.2006.02.053 · DOI
- 10.1007/s00792-013-0552-6 · DOI
- 10.1002/mbo3.128 · DOI
- 2020, Species-Specific Recognition of Sulfolobales Mediated by UV-Inducible Pili and S-Layer Glycosylation Patterns, mBio, 11, e03014
- 10.1073/pnas.1513740113 · DOI
- Wagner, M. , van Wolferen, M. , Wagner, A. , Lassak, K. , Meyer, B. , Reimann, J. , & Albers, S.-V. (2012). Versatile Genetic Tool Box for the Crenarchaeote Sulfolobus acidocaldarius. Frontiers in Microbiology, 3. · DOI
- 10.1093/femsre/fuy020 · DOI
- 2018, The essential genome of the crenarchaeal model Sulfolobus islandicus, Nature Communications, 9, 1
Metadata
- Authors
- Recalde, A., Wagner, A., Sivabalasarma, S., Yurmashava, A., Fehr, N. P., Thurm, R., Le, T. N., Köbler, C., Wassmer, B., Albers, S.-V., & van Wolferen, M.
- Affiliations
- University of Freiburg (DE)
- Corresponding author
- Albers, Sonja-Verena
- van Wolferen, Marleen
- ORCID
- Venue
- microLife
- Publisher
- openRxiv
- Published
- 2024-09-30
- Volume
- 6
- Pages
- uqaf002-uqaf002
- ISSN
- 2633-6693 (ISSN-L)
- PMC
- PMC11823120
- OpenAlex
- W4406605637
- Cited by
- 3
- References
- 1
- Citations by year
- 2026: 2 · 2025: 1
- FWCI
- 0.90
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- microLife (publishedVersion, cc-by-nc)
- bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by-nc)
- PubMed (publishedVersion)
- FreiDok plus (Universitätsbibliothek Freiburg) (submittedVersion)
- Funders
- California Department of Fish and Game (AL1206, 426849454)
- Deutsche Forschungsgemeinschaft (SFB1381, 426849454, AL1206)
- Albert-Ludwigs-Universität Freiburg
- Bộ Giáo dục và Ðào tạo
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
- Keywords
- Sulfolobales, DNA repair, homologous recombination, DNA double-strand break repair, cell aggregation, UV-induced DNA damage, DNA damage response, archaea
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review