PreprintCited by 29Redox biology and oxidative stressCancer-related Molecular PathwaysAlzheimer's disease research and treatments

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Cysteine oxidation triggers amyloid fibril formation of the tumor suppressor p16 INK4A

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Preprint — published as 10.1016/j.redox.2019.101316 · Paper page

Abstract

Accumulation of the CDK4/6 inhibitor p16 INK4A in response to oncogenic transformation leads to cell cycle arrest and senescence and is therefore frequently lost in cancer. p16 INK4A is also known to accumulate under conditions of oxidative stress and thus could potentially be regulated by the reversible oxidation of cysteines (redox signaling). Indeed, oxidation of the single cysteine in p16 INK4A in human cells occurs under relatively mild oxidizing conditions and leads to disulfide-dependent dimerization. p16 INK4A is an all alpha-helical protein, but here we report that upon cysteine-dependent dimerization, p16 INK4A undergoes a dramatic structural rearrangement and forms aggregates that have the typical features of amyloid fibrils, including binding of diagnostic dyes, presence of cross-β sheet structure, and typical dimensions found in electron microscopy. p16 INK4A amyloid formation abolishes its function as a CDK4/6 inhibitor. Collectively, these observations mechanistically link the cellular redox state to the inactivation of p16 INK4A through the formation of amyloid fibrils.

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References 75 · Cited by 29

Research works printed but not linked: 59

  1. 10.1126/science.274.5293.1672 · DOI · Paper page
  2. 10.1038/365349a0 · DOI
  3. 10.1016/j.cell.2012.12.010 · DOI · Paper page
  4. 10.1093/nar/gkw1121 · DOI · Paper page
  5. 10.1038/26155 · DOI · Paper page
  6. 10.1101/gad.10.12.1491 · DOI · Paper page
  7. 10.1038/nrm3801 · DOI · Paper page
  8. 2012, Tumor suppressor genes and ROS: complex networks of interactions, Free radical biology & medicine, 52, 7, 10.1016/j.freeradbiomed.2011.09.035 · DOI
  9. 10.1016/j.molcel.2012.12.014 · DOI
  10. 2007, Reversible disulfide bond formation of intracellular proteins probed by NMR spectroscopy, Free radical biology & medicine, 43, 1263, 10.1016/j.freeradbiomed.2007.06.010 · DOI
  11. 10.1006/jmbi.1997.1348 · DOI
  12. 10.1146/annurev.biochem.75.101304.123901 · DOI
  13. 1989, Quantitative evaluation of congo red binding to amyloid-like proteins with a beta-pleated sheet conformation, The journal of histochemistry and cytochemistry: official journal of the Histochemistry Society, 37, 1273, 10.1177/37.8.2666510 · DOI
  14. 10.1016/j.ymeth.2004.03.012 · DOI
  15. 2004, FTIR reveals structural differences between native beta-sheet proteins and amyloid fibrils, Protein science: a publication of the Protein Society, 13, 3314, 10.1110/ps.041024904 · DOI · Paper page
  16. 10.1016/j.bbamem.2013.04.012 · DOI
  17. 10.1038/nbt1012 · DOI
  18. 10.1093/nar/gku399 · DOI
  19. 10.1016/j.jmb.2008.05.013 · DOI
  20. 10.1186/1471-2105-8-65 · DOI
  21. 10.1146/annurev-biochem-061516-045115 · DOI · Paper page
  22. 10.1371/journal.pbio.0040006 · DOI
  23. 10.1016/j.cell.2012.06.019 · DOI · Paper page
  24. 10.1126/science.1173155 · DOI
  25. 2017, Necroptosis in neurodegenerative diseases: a potential therapeutic target, Cell death & disease, 8, e2905, 10.1038/cddis.2017.286 · DOI
  26. 10.1002/prot.24338 · DOI
  27. 10.1002/anie.201100986 · DOI
  28. 10.1073/pnas.0807058105 · DOI
  29. 10.1074/jbc.M802083200 · DOI
  30. 10.1016/j.bbrc.2012.05.133 · DOI
  31. 10.1074/jbc.M007862200 · DOI
  32. 2018, Role of the Disulfide Bond in Prion Protein Amyloid Formation: A Thermodynamic and Kinetic Analysis, Biophysical journal, 114, 885, 10.1016/j.bpj.2017.12.031 · DOI
  33. 10.1074/jbc.RA117.001068 · DOI
  34. 10.1111/j.1471-4159.2012.07847.x · DOI
  35. 2008, EGCG redirects amyloidogenic polypeptides into unstructured, off-pathway oligomers, Nature structural & molecular biology, 15, 558, 10.1038/nsmb.1437 · DOI
  36. 2018, Amyloid by Design: Intrinsic Regulation of Microbial Amyloid Assembly, Journal of molecular biology, 430, 3631, 10.1016/j.jmb.2018.07.007 · DOI
  37. 10.1016/j.cell.2017.08.048 · DOI
  38. 10.1073/pnas.0406847102 · DOI
  39. 10.1021/ja2017703 · DOI
  40. 10.1016/j.cell.2012.04.017 · DOI · Paper page
  41. 10.1016/j.molmed.2009.01.003 · DOI · Paper page
  42. 10.1371/journal.pone.0086720 · DOI
  43. 2018, Proteome-wide analysis of cysteine oxidation reveals metabolic sensitivity to redox stress, Nature communications, 9, 1581, 10.1038/s41467-018-04003-3 · DOI
  44. 10.1074/mcp.O115.056051 · DOI
  45. 10.1016/S0891-5849(01)00480-4 · DOI · Paper page
  46. 10.1038/sj.onc.1209895 · DOI
  47. 2018, A role for 2-Cys peroxiredoxins in facilitating cytosolic protein thiol oxidation, Nature chemical biology, 14, 148, 10.1038/nchembio.2536 · DOI
  48. 10.1038/nrd4002 · DOI · Paper page
  49. 10.1016/S0022-2836(03)00175-X · DOI
  50. 10.1073/pnas.92.14.6289 · DOI · Paper page
  51. 2011, A complex of Kif18b and MCAK promotes microtubule depolymerization and is negatively regulated by Aurora kinases, Current biology: CB, 21, 1356, 10.1016/j.cub.2011.07.017 · DOI · Paper page
  52. 10.1007/BF00197809 · DOI
  53. 10.1002/prot.20449 · DOI
  54. 10.1107/S1600576717007786 · DOI
  55. 10.1016/0022-2364(82)90213-X · DOI
  56. 10.1110/ps.3180102 · DOI
  57. 10.1038/nbt.1511 · DOI · Paper page
  58. 10.1016/j.immuni.2010.01.013 · DOI · Paper page
  59. 10.1016/j.jchromb.2006.09.033 · DOI

Metadata

Authors
Göbl, C., Morris, V. K., van Dam, L., Visscher, M., Polderman, P. E., Hartlmüller, C., de Ruiter, H., Hora, M., Liesinger, L., Birner-Gruenberger, R., Vos, H. R., Reif, B., Madl, T., & Dansen, T. B.
Affiliations
  • Center for Integrated Protein Science Munich (DE)
  • University Medical Center Utrecht (NL)
  • Medical University of Graz (AT)
Corresponding author
  • Madl, Tobias
  • Dansen, Tobias B.
Venue
Redox Biology
Publisher
openRxiv
Published
2019-01-02
Volume
28
Pages
101316-101316
ISSN
2213-2317 (ISSN-L)
OpenAlex
W2972098902
Cited by
29
References
75
Citations by year
2026: 3 · 2025: 2 · 2024: 6 · 2023: 2 · 2022: 5 · 2021: 5 · 2020: 6
FWCI
1.32
Type
journal article
Language
en
Open access
Licence
cc-by-nc-nd
Locations
  • Redox Biology (publishedVersion, cc-by-nc-nd)
  • bioRxiv (Cold Spring Harbor Laboratory) (acceptedVersion)
  • PubMed Central (publishedVersion, cc-by-nc-nd)
  • PubMed (publishedVersion)
  • PuSH - Publication Server of Helmholtz Zentrum München (submittedVersion, cc-by-nc-nd)
  • DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
  • Utrecht University Repository (Utrecht University) (submittedVersion, other-oa)
  • UC Research Repository (University of Canterbury) (submittedVersion, cc-by-nc-nd)
  • mediaTUM (Technical University of Munich) (submittedVersion, other-oa)
  • Site cant be reached (submittedVersion, cc-by-nc-nd)
Funders
  • National Natural Science Foundation of China (KLI645, 31450110423, KLI425)
  • Chinese Academy of Sciences (2015VBB045)
  • Austrian Science Fund (P28854 and I3792, DK-MCD W1226, KLI645, FWF: P28854, 870454, I 3792, KLI 425, 864690, P28854, W 1226)
  • KWF Kankerbestrijding
  • Österreichische Forschungsförderungsgesellschaft (864690, 870454, 2016/2017, P28854, W1226, I3792, DK-MCD W1226)
  • BioTechMed-Graz (870454, P28854, 864690, 2016/2017, DK-MCD W1226, I3792)
  • Medical Research Council
  • National Health and Medical Research Council
  • Helmholtz Zentrum München
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Redox biology and oxidative stress
  • Health Sciences › Medicine › Oncology › Cancer-related Molecular Pathways
  • Life Sciences › Neuroscience › Cellular and Molecular Neuroscience › Alzheimer's disease research and treatments
Keywords
p16INK4a, cysteine oxidation, amyloid fibril formation, redox signaling, protein dimerization, disulfide bonds, protein aggregation, cross-β sheet, CDK4/6 inhibition, tumor suppressor inactivation, oxidative stress, protein structural rearrangement
MeSH terms
Amyloid, Cell Cycle, Cysteine, Humans, Models, Molecular, Oxidation-Reduction, Cellular Senescence, Protein Structure, Secondary, Cyclin-Dependent Kinase Inhibitor p16, Protein Multimerization, HEK293 Cells

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