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Parvathaneni, R. K., Bertolini, E., Shamimuzzaman, M., Vera, D. L., Lung, P.-Y., Rice, B. R., Zhang, J., Brown, P. J., Lipka, A. E., Bass, H. W., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/870378 · Cited by 6

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Thermodynamics-based modeling reveals regulatory effects of indirect transcription factor-DNA binding

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Genome Mapping and Genomics in Drosophila

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Inference of Transcription Factor Regulation Patterns Using Gene Expression Covariation in Natural Populations of Drosophila melanogaster

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The Drosophila cardiogenic transcription factors Myocyte enhancer factor-2 and Tinman contribute to heart lumen enlargement through direct activation of the collagen gene MultiplexinPreprint

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Protein interaction networks and their applications to protein characterization and cancer genes prediction

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Role of the TLM in the localization of HRO-TWIST mRNA

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Stringer, S. J. (2014)

Understanding honey bee worker sterility: a conceptual-empirical framework

Mullen, E. K. (2013) · Scholarship@Western (Western University)

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Identification of downstream targets of Alk signaling in Drosophila melanogaster

Varshney, G. K. (2008) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

Identification of the wings apart transcriptional unit in Drosophila melanogaster

Morriss, G. R. (2012) · UNM’s Digital Repository (University of New Mexico)

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Furlong, E. E. M. (2010)

Functional proteomics of Bcr-Abl signaling

Brehme, M. (2009) · University of Vienna · doi:10.25365/thesis.3955

Toll-Dorsal Pathway Regulates Immunity as well as Dorso-Ventral Patterning in Drosophila

Chauhan, M. (2015) · Revista de Fomento Social · doi:10.16943/ptinsa/2015/v81i2/48096

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Wei, S. C. (2014) · eScholarship (California Digital Library)

Researchdevelopmental expression dynamics of Drosophila melanogaster transcription factors

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Investigating the Failure of Myogenesis in the Pediatric Tumor Rhabdomyosarcoma

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Chromatin Topology and Transcription in Myogenesis

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Mechanisms of BES1-regulated gene expression downstream of brassinosteroid signaling in Arabidopsis thaliana

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Determination of novel members in the Drosophila melanogaster anteriorposterior patterning system using natural variationPreprint

Jermusyk, A. A., Gharavi, S. E., Tingare, A. S., & Reeves, G. T. (2018) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/319434

Functionally Coherent Transcription Factor Target Networks Illuminate Control of Epithelial RemodellingPreprint

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Insect Genomics

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Fitting thermodynamic-based models: Incorporating parameter sensitivity improves the performance of an evolutionary algorithm

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Contextualising transcription factor binding during embryogenesis using natural sequence variationPreprint

Sigalova, O. M., Forneris, M., Stojanovska, F., Zhao, B., Viales, R. R., Rabinowitz, A. H., Hammal, F., Ballester, B., Zaugg, J. B., & Furlong, E. E. M. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.10.24.619975

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Analysis of Gene Expression in Aedes aegypti Suggests Changes in Early Genetic Control of Mosquito Development

dos Santos, R. C., Santos, D., Ribeiro, L., Muñoz, J. J. M., Uhl, M. V. D. C., Logullo, C., Amarante, A. D. M., Fantappíé, M. R., & da Fonseca, R. N. (2025) · Journal of Experimental Zoology Part B Molecular and Developmental Evolution · doi:10.1002/jez.b.23315

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Megaly, M., Foran, G., Ali, A., Turgambayeva, A., Sengsouriya, T., Berube, S., Hallam, R. D., Liang, P., & Necakov, A. (2026) · International Journal of Molecular Sciences · doi:10.3390/ijms27031284

Approximate Bayesian inference of directed acyclic graphs in biology with flexible priors on edge states

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Enhancer Tuning by Sequence-Specific RepressorsPreprint

Ichino, L., Brennan, K., Mallory, B. J., Swigut, T., Bohaczuk, S. C., Mohammed, J., Mudeppa, D. G., Tabatabaee, S., Ni, C., Stergachis, A. B., et al. (2026) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2026.09.11.751074 · Cited by 1

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