The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
CDART: Protein Homology by Domain Architecture
Open accessAbstract
The Conserved Domain Architecture Retrieval Tool (CDART) performs similarity searches of the NCBI Entrez Protein Database based on domain architecture, defined as the sequential order of conserved domains in proteins. The algorithm finds protein similarities across significant evolutionary distances using sensitive protein domain profiles rather than by direct sequence similarity. Proteins similar to a query protein are grouped and scored by architecture. Relying on domain profiles allows CDART to be fast, and, because it relies on annotated functional domains, informative. Domain profiles are derived from several collections of domain definitions that include functional annotation. Searches can be further refined by taxonomy and by selecting domains of interest. CDART is available at http://www.ncbi.nlm.nih.gov/Structure/lexington/lexington.cgi .
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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
A superfamily of conserved domains in DNA damage‐ responsive cell cycle checkpoint proteins
Bork, P., Hofmann, K., Bucher, P., Neuwald, A. F., Altschul, S. F., & Koonin, E. V. (1997) · The FASEB Journal · doi:10.1096/fasebj.11.1.9034168 · Cited by 746
Cited by
CDD: a Conserved Domain Database for protein classification
Marchler-Bauer, A. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki069 · Cited by 1,156
E3 ubiquitin ligases as T cell anergy factors
Mueller, D. L. (2004) · Nature Immunology · doi:10.1038/ni1106 · Cited by 224
Bacterial outer membrane channel for divalent metal ion acquisition
Hohle, T. H., Franck, W. L., Stacey, G., & O'Brian, M. R. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1110137108 · Cited by 66
Spencer, B. L., Job, A. M., Robertson, C. M., Hameed, Z. A., Serchejian, C., Wiafe‐Kwakye, C. S., Mendonça, J. C., Apolonio, M. A., Nagao, P. E., Neely, M. N., et al. (2023) · Molecular Microbiology · doi:10.1111/mmi.15115 · Cited by 28
Metadata
- Authors
- Geer, L. Y., Domrachev, M., Lipman, D. J., & Bryant, S. H.
- Venue
- Genome Research
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2002-10-01
- Volume
- 12
- Issue
- 10
- Pages
- 1619-1623
- ISSN
- 1088-9051 (ISSN-L)
- 1549-5469
- OpenAlex
- W2045839655
- Cited by
- 710
- References
- 2
- Type
- posted content
- Language
- en
- Open access
- bronze
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