The DOI matches its Crossref record; 60 of the 60 references it cites were found in a registry or an index.
Repair of Endogenous DNA Damage
Abstract
The remarkable stability of genes seemed a puzzlingfeature in the early days of molecular biology. It was evensuggested that new laws of physics might emerge to explain biological paradigms such as the resilience of thegenetic information. The complementary sequences inthe DNA double-helical structure provided a partial answer as to how this stability is retained, but it still tookmore than 10 years after the Watson and Crick 1953model to realize that radiation-damaged residues in DNAcould be corrected by a local excision-repair process. Inretrospect, the early concerns were fully justified; mammalian cellular DNA is a constant target of thermal"noise" in the form of spontaneous hydrolysis at 37ºC,and it is also susceptible to damage caused by active oxygen as well as reactive metabolites and coenzymes. Theresulting lesions are generally removed by the base excision repair (BER) pathway, resulting in short replacementpatches within one of the two DNA strands. Consequently, nonreplicating DNA is not absolutely stable butturns over at a relevant, albeit slow, rate in vivo. This endogenous repair is sufficiently accurate and efficient toexplain the apparent stability of the genetic material...
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“the majority ultimately manifest in the form of single‐strand breaks (SSBs)”
From Mechanisms of DNA damage-mediated neurotoxicity in neurodegenerative disease (2022) · cites this paper as Lindahl & Barnes, 2000
In the citing paper
“reactive oxygen species (ROS), which attack DNA to form oxidized bases and abasic sites”
From Mechanisms of DNA damage-mediated neurotoxicity in neurodegenerative disease (2022) · cites this paper as Lindahl & Barnes, 2000
Citations
Cites
1 retracted
Cooper, P. K., Nouspikel, T. P., Clarkson, S. G., & Leadon, S. A. (1997) · Science · doi:10.1126/science.275.5302.990 · Cited by 306
RetractedRate of depurination of native deoxyribonucleic acid
Lindahl, T. L., & Nyberg, B. (1972) · Biochemistry · doi:10.1021/bi00769a018 · Cited by 1,558
Self-citationLindahl, T. L., & Wood, R. D. (1999) · Science · doi:10.1126/science.286.5446.1897 · Cited by 1,521
Self-citationStructural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA
Bruner, S. D., Norman, D. P. G., & Verdine, G. L. (2000) · Nature · doi:10.1038/35002510 · Cited by 972
Accumulation of premutagenic DNA lesions in mice defective in removal of oxidative base damage
Klungland, A., Rosewell, I., Hollenbach, S., Larsen, E., Daly, G., Epe, B., Seeberg, E., Lindahl, T., & Barnes, D. E. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.23.13300 · Cited by 807
Self-citationMutagenic deamination of cytosine residues in DNA
Duncan, B. K., & Miller, J. H. (1980) · Nature · doi:10.1038/287560a0 · Cited by 792
Klungland, A., & Lindahl, T. (1997) · The EMBO Journal · doi:10.1093/emboj/16.11.3341 · Cited by 789
Self-citationKubota, Y., Nash, R. A., Klungland, A., Schär, P., Barnes, D. E., & Lindahl, T. L. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb01056.x · Cited by 776
Self-citationDNA-bound structures and mutants reveal abasic DNA binding by APE1 DNA repair and coordination
Mol, C. D., Izumi, T., MITRA, S. P., & Tainer, J. A. (2000) · Nature · doi:10.1038/35000249 · Cited by 764
A superfamily of conserved domains in DNA damage‐ responsive cell cycle checkpoint proteins
Bork, P., Hofmann, K., Bucher, P., Neuwald, A. F., Altschul, S. F., & Koonin, E. V. (1997) · The FASEB Journal · doi:10.1096/fasebj.11.1.9034168 · Cited by 746
Michaels, M. L., & Miller, J. H. (1992) · Journal of Bacteriology · doi:10.1128/jb.174.20.6321-6325.1992 · Cited by 697
The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites
Hendrich, B., Hardeland, U., Ng, H., Jiricny, J., & Bird, A. P. (1999) · Nature · doi:10.1038/45843 · Cited by 670
Heat-induced deamination of cytosine residues in deoxyribonucleic acid
Lindahl, T., & Nyberg, B. (1974) · Biochemistry · doi:10.1021/bi00713a035 · Cited by 613
Self-citationFormation, Prevention, and Repair of DNA Damage by Iron/Hydrogen Peroxide
Henle, E. S., & Linn, S. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.31.19095 · Cited by 593
Frederico, L. A., Kunkel, T. A., & Shaw, B. R. (1990) · Biochemistry · doi:10.1021/bi00462a015 · Cited by 508
The Human OGG1 Gene: Structure, Functions, and Its Implication in the Process of Carcinogenesis
Boiteux, S., & Radicella, J. P. (2000) · Archives of Biochemistry and Biophysics · doi:10.1006/abbi.2000.1773 · Cited by 486
The rate of hydrolytic deamination of 5-methylcytosine in double-stranded DNA
Shen, J., Rideout, W. M., & Jones, P. A. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.6.972 · Cited by 468
Rydberg, B., & Lindahl, T. L. (1982) · The EMBO Journal · doi:10.1002/j.1460-2075.1982.tb01149.x · Cited by 410
Self-citationSlupska, M. M., Baikalov, C., Luther, W. M., Chiang, J., Wei, Y., & Miller, J. H. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.13.3885-3892.1996 · Cited by 389
Carrero, P., Okamoto, K., Coumailleau, P., O’Brien, S. L., Tanaka, H., & Poellinger, L. (2000) · Molecular and Cellular Biology · doi:10.1128/mcb.20.1.402-415.2000 · Cited by 386
The redox and DNA-repair activities of Ref-1 are encoded by nonoverlapping domains.
Xanthoudakis, S., Miao, G. G., & Curran, T. (1994) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.91.1.23 · Cited by 353
Passing the baton in base excision repair.
Kunkel, T. A., & Wilson, S. H. (2000) · Nature Structural Biology · doi:10.1038/73260 · Cited by 349
Kuraoka, I., Bender, C., Romieu, A., Cadet, J., Wood, R. D., & Lindahl, T. L. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.070471597 · Cited by 349
Self-citationInteraction of human apurinic endonuclease and DNA polymerase β in the base excision repair pathway
Bennett, R. A. O., Wilson, D. M., Wong, D., & Demple, B. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.14.7166 · Cited by 348
Mmh / Ogg1 gene inactivation results in accumulation of 8-hydroxyguanine in mice
Minowa, O., Arai, T., Hirano, M., Monden, Y., Nakai, S., Fukuda, M., Itoh, M., Takano, H., Hippou, Y., Aburatani, H., et al. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.050404497 · Cited by 348
Sobol, R. W., Prasad, R., Evenski, A. J., Baker, A. E., Yang, X., Horton, J. K., & Wilson, S. H. (2000) · Nature · doi:10.1038/35015598 · Cited by 347
Post‐replicative base excision repair in replication foci
Otterlei, M., Warbrick, E., Nagelhus, T. A., Haug, T., Slupphaug, G., Akbari, M., Aas, P. A., Steinsbekk, K., Bakke, O., & Krokan, H. E. (1999) · The EMBO Journal · doi:10.1093/emboj/18.13.3834 · Cited by 340
Nilsen, H. L., Rosewell, I. R., Robins, P., Skjelbred, C. F., Andersen, S. B., Slupphaug, G., Daly, G., Krokan, H. E., Lindahl, T. L., & Barnes, D. E. (2000) · Molecular Cell · doi:10.1016/s1097-2765(00)80271-3 · Cited by 322
Self-citationFunctional sites of interaction between release factor RF1 and the ribosome.
Wilson, K. S., Nakamura, Y., Ito, K., & Noller, H. F. (2000) · Nature Structural Biology · doi:10.1038/82818 · Cited by 309
Brooks, P. J., Wise, D. S., Berry, D. A., Kosmoski, J. V., Smerdon, M. J., Somers, R. L., Mackie, H., Spoonde, A. Y., Ackerman, E. J., Coleman, K. G., et al. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.m002259200 · Cited by 298
Base Excision Repair of Oxidative DNA Damage Activated by XPG Protein
Klungland, A., Höss, M., Gunz, D., Constantinou, A., Clarkson, S. G., Doetsch, P. W., Bolton, P. H., Wood, R. D., & Lindahl, T. L. (1999) · Molecular Cell · doi:10.1016/s1097-2765(00)80172-0 · Cited by 291
Self-citationNakamura, J., Walker, V. E., Upton, P. B., Chiang, S. Y., Kow, Y. W., & Swenberg, J. A. (1998) · PubMed · Cited by 277
XRCC1 Protein Interacts with One of Two Distinct Forms of DNA Ligase III
Nash, R. A., Caldecott, K. W., Barnes, D. E., & Lindahl, T. L. (1997) · Biochemistry · doi:10.1021/bi962281m · Cited by 266
Self-citationCloning and Expression of Human G/T Mismatch-specific Thymine-DNA Glycosylase
Neddermann, P., Gallinari, P., Lettieri, T., SCHMID, D. M., Truong, O., Hsuan, J. J., Wiebauer, K., & Jiricny, J. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.22.12767 · Cited by 260
The Type of DNA Glycosylase Determines the Base Excision Repair Pathway in Mammalian Cells
Fortini, P., Parlanti, E., Sidorkina, O. M., Laval, J., & Dogliotti, E. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.21.15230 · Cited by 257
Structure of an XRCC1 BRCT domain: a new protein–protein interaction module
Zhang, X., Moréra, S., Bates, P. A., Whitehead, P. C., Coffer, A. I., Hainbucher, K., Nash, R. A., Sternberg, M. J. E., Lindahl, T. L., & Freemont, P. S. (1998) · The EMBO Journal · doi:10.1093/emboj/17.21.6404 · Cited by 255
Self-citationBase excision repair deficient mice lacking the Aag alkyladenine DNA glycosylase
Engelward, B. P., Weeda, G., Wyatt, M. D., Broekhof, J. L. M., de Wit, J., Donker, I., Allan, J. M., Gold, B. I., Hoeijmakers, J. H. J., & Samson, L. D. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.24.13087 · Cited by 232
Haushalter, K. A., Stukenberg, P. T., Kirschner, M. W., & Verdine, G. L. (1999) · Current Biology · doi:10.1016/s0960-9822(99)80087-6 · Cited by 224
Thomas, D., Scot, A. D., Barbey, R., Padula, M., & Boiteux, S. (1997) · Molecular and General Genetics MGG · doi:10.1007/s004380050405 · Cited by 222
Long Patch Base Excision Repair with Purified Human Proteins
Pascucci, B., Stucki, M., Jónsson, Z. O., Dogliotti, E., & Hübscher, U. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.47.33696 · Cited by 208
Joenje, H. (1989) · Mutation Research/DNAging · doi:10.1016/0921-8734(89)90001-5 · Cited by 197
Rebeck, G. W., & Samson, L. D. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.6.2068-2076.1991 · Cited by 188
Matsumoto, Y., Kim, K. M., Hurwitz, J., Gary, R. K., Levin, D. S., Tomkinson, A. E., & Park, M. S. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.47.33703 · Cited by 175
A human DNA editing enzyme homologous to the Escherichia coli DnaQ/MutD protein
Höss, M., Robins, P., Naven, T. J. P., Pappin, D., SGOUROS, J. G., & Lindahl, T. L. (1999) · The EMBO Journal · doi:10.1093/emboj/18.13.3868 · Cited by 173
Self-citationSaparbaev, M. K., & Laval, J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.15.8508 · Cited by 171
Mol, C. D., Izumi, T., MITRA, S. P., & Tainer, J. A. (2000) · Nature · doi:10.1038/35006693 · Cited by 162
Fink, S. P., Reddy, G. R., & Marnett, L. J. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.16.8652 · Cited by 158
Generation of an endogenous DNA-methylating agent by nitrosation in Escherichia coli
Taverna, P., & Sedgwick, B. (1996) · Journal of Bacteriology · doi:10.1128/jb.178.17.5105-5111.1996 · Cited by 156
The BRCA1 C-terminal domain: structure and function
Huyton, T., Bates, P. A., Zhang, X., Sternberg, M. J. E., & Freemont, P. S. (2000) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(00)00034-3 · Cited by 147
Page, F. L., Klungland, A., Barnes, D. E., Sarasin, A. R., & Boiteux, S. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.140137297 · Cited by 142
Self-citationThermodynamic Consequences of an Abasic Lesion in Duplex DNA Are Strongly Dependent on Base Sequence
Gelfand, C. A., Plum, G. E., Grollman, A. P., Johnson, F., & Breslauer, K. J. (1998) · Biochemistry · doi:10.1021/bi9803372 · Cited by 127
Elder, R. H., Jansen, J. G., Weeks, R. J., Willington, M. A., Deans, B., Watson, A. J., Mynett, K. J., Bailey, J., Cooper, D. P., Rafferty, J. A., et al. (1998) · Molecular and Cellular Biology · doi:10.1128/mcb.18.10.5828 · Cited by 114
Impellizzeri, K. J., Anderson, B. A., & Burgers, P. (1991) · Journal of Bacteriology · doi:10.1128/jb.173.21.6807-6810.1991 · Cited by 105
DNA specificity enhanced by sequential binding of protein monomers
Kohler, J. J., Metallo, S. J., Schneider, T. L., & Schepartz, A. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.21.11735 · Cited by 104
How do DNA repair proteins locate damaged bases in the genome?
Verdine, G. L., & Bruner, S. D. (1997) · Chemistry & Biology · doi:10.1016/s1074-5521(97)90123-x · Cited by 93
Hang, B., Medina, M., Fraenkel‐Conrat, H., & Singer, B. A. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.23.13561 · Cited by 81
Dianov, G. L., Thybo, T., Dianova, I. I., Lipinski, L. J., & Bohr, V. A. (2000) · Journal of Biological Chemistry · doi:10.1074/jbc.275.16.11809 · Cited by 79
Friedberg, E. C., & Meira, L. B. (1999) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(98)00068-8 · Cited by 76
Friedberg, E. C., & Meira, L. B. (2000) · Mutation Research/DNA Repair · doi:10.1016/s0921-8777(00)00006-9 · Cited by 48
Immunolocalization of 8-Oxoguanine in Nutrient-Deprived Mammalian Tissue
Conion, K. A., Grollman, A. P., & Berríos, M. (2000) · Journal of Histotechnology · doi:10.1179/his.2000.23.1.37 · Cited by 11
Flagged first, then by citations
Research works printed but not linked: 1
- Nakamura J., 1998, Cancer Res., 58, 222
Cited by
Sorted by citations
The DNA-damage response in human biology and disease
Jackson, S. P., & Bartek, J. (2009) · Nature · doi:10.1038/nature08467 · Cited by 6,092
The DNA Damage Response: Making It Safe to Play with Knives
Ciccia, A., & Elledge, S. J. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.09.019 · Cited by 4,368
Mechanisms of DNA damage, repair, and mutagenesis
Chatterjee, N., & Walker, G. C. (2017) · Environmental and Molecular Mutagenesis · doi:10.1002/em.22087 · Cited by 2,039
Gene regulation and DNA damage in the ageing human brain
Lu, T., Pan, Y., Kao, S.-Y., Li, C., Kohane, I., Chan, J., & Yankner, B. A. (2004) · Nature · doi:10.1038/nature02661 · Cited by 1,874
Genomic Instability and Aging-like Phenotype in the Absence of Mammalian SIRT6
Mostoslavsky, R., Chua, K. F., Lombard, D. B., Pang, W. W., Fischer, M. R., Gellon, L., Liu, P., Mostoslavsky, G., Franco, S., Murphy, M. M., et al. (2006) · Cell · doi:10.1016/j.cell.2005.11.044 · Cited by 1,637
Metadata
- Authors
- LINDAHL, T., & BARNES, D. E.
- ORCID
- LINDAHL, T.
- Venue
- Cold Spring Harbor Symposia on Quantitative Biology
- Publisher
- Cold Spring Harbor Laboratory
- Published
- 2000-01-01
- Volume
- 65
- Issue
- 0
- Pages
- 127-134
- ISSN
- 0091-7451 (ISSN-L)
- 1943-4456
- OpenAlex
- W2010677667
- Cited by
- 714
- References
- 60
- Citations by year
- 2026: 22 · 2025: 33 · 2024: 44 · 2023: 41 · 2022: 57 · 2021: 94 · 2020: 57 · 2019: 45 · 2018: 37 · 2017: 52 · 2016: 39 · 2015: 23 · 2014: 37 · 2013: 26 · 2012: 28
- Type
- posted content
- Language
- en
- Open access
- closed
- Locations
- Cold Spring Harbor Symposia on Quantitative Biology (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Cancer Institute (F31CA260794)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA Repair Mechanisms
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › DNA and Nucleic Acid Chemistry
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cancer Research › Carcinogens and Genotoxicity Assessment
- Keywords
- DNA repair, endogenous DNA damage, base excision repair, spontaneous hydrolysis, reactive oxygen species, DNA stability, excision repair
- MeSH terms
- Animals, DNA, DNA Damage, DNA Repair, N-Glycosyl Hydrolases, Mice, Knockout, DNA-Formamidopyrimidine Glycosylase, DNA Glycosylases, Mice, Uracil-DNA Glycosidase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review