Hands-On Growth Laws Theory Cookbook

mTOR Signaling in Growth Control and Disease

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Global quantification of mammalian gene expression control

Schwanhäusser, B., Busse, D., Li, N., Dittmar, G., Schuchhardt, J., Wolf, J., Chen, W., & Selbach, M. (2011) · Nature · doi:10.1038/nature10098 · Cited by 6,566

TOR signaling in growth and metabolism

Wullschleger, S., Loewith, R., & Hall, M. N. (2006) · Cell · doi:10.1016/j.cell.2006.01.016 · Cited by 5,787

Genomic Expression Programs in the Response of Yeast Cells to Environmental Changes

Gasch, A. P., Spellman, P. T., Kao, C. M., Carmel-Harel, O., Eisen, M. B., Storz, G., Botstein, D., & Brown, P. O. (2000) · Molecular Biology of the Cell · doi:10.1091/mbc.11.12.4241 · Cited by 4,815

THE GROWTH OF BACTERIAL CULTURES

Monod, J. (1949) · Annual Review of Microbiology · doi:10.1146/annurev.mi.03.100149.002103 · Cited by 4,643

Microbial interactions: from networks to models

Faust, K., & Raes, J. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2832 · Cited by 4,268

More Is Different: Broken symmetry and the nature of the hierarchical structure of science.

Anderson, P. W. (1972) · Science · doi:10.1126/science.177.4047.393 · Cited by 4,018

Protein degradation and protection against misfolded or damaged proteins.

Goldberg, A. L. (2003) · Nature · doi:10.1038/nature02263 · Cited by 2,088

Automated design of synthetic ribosome binding sites to control protein expression

Salis, H. M., Mirsky, E. A., & Voigt, C. A. (2009) · Nature Biotechnology · doi:10.1038/nbt.1568 · Cited by 1,844

Intracellular Protein Degradation in Mammalian and Bacterial Cells

Goldberg, A. L., & Dice, J. F. (1974) · Annual Review of Biochemistry · doi:10.1146/annurev.bi.43.070174.004155 · Cited by 1,767

Dynamics and diversity in autophagy mechanisms: lessons from yeast

Nakatogawa, H., Suzuki, K., Kamada, Y., & Ohsumi, Y. (2009) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm2708 · Cited by 1,761

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

Scott, M., Gunderson, C. W., Mateescu, E. M., Zhang, Z., & Hwa, T. (2010) · Science · doi:10.1126/science.1192588 · Cited by 1,470

Dependency on Medium and Temperature of Cell Size and Chemical Composition during Balanced Growth of Salmonella typhimurium

Schaechter, M., MaalOe, O., & Kjeldgaard, N. O. (1958) · Journal of General Microbiology · doi:10.1099/00221287-19-3-592 · Cited by 1,435

Phenotypic Diversity, Population Growth, and Information in Fluctuating Environments

Kussell, E. L., & Leibler, S. (2005) · Science · doi:10.1126/science.1114383 · Cited by 1,357

TRANSLATIONAL REGULATION OFGCN4AND THE GENERAL AMINO ACID CONTROL OF YEAST

Hinnebusch, A. G. (2005) · Annual Review of Microbiology · doi:10.1146/annurev.micro.59.031805.133833 · Cited by 1,297

Quantifying Absolute Protein Synthesis Rates Reveals Principles Underlying Allocation of Cellular Resources

Li, G., Burkhardt, D. H., Gross, C. A., & Weissman, J. S. (2014) · Cell · doi:10.1016/j.cell.2014.02.033 · Cited by 1,259

The Black Queen Hypothesis: Evolution of Dependencies through Adaptive Gene Loss

Morris, J., Lenski, R. E., & Zinser, E. R. (2012) · mBio · doi:10.1128/mbio.00036-12 · Cited by 1,231

(p)ppGpp: Still Magical?

Potrykus, K., & Cashel, M. (2008) · Annual Review of Microbiology · doi:10.1146/annurev.micro.62.081307.162903 · Cited by 1,170

Species packing and competitive equilibrium for many species

MacArthur, R. H. (1970) · Theoretical Population Biology · doi:10.1016/0040-5809(70)90039-0 · Cited by 1,093

In silico predictions of Escherichia coli metabolic capabilities are consistent with experimental data

Edwards, J. S., Ibarra, R. U., & Palsson, B. Ø. (2001) · Nature Biotechnology · doi:10.1038/84379 · Cited by 941

Ubiquitin, proteasomes, and the regulation of intracellular protein degradation

Hochstrasser, M. (1995) · Current Opinion in Cell Biology · doi:10.1016/0955-0674(95)80031-x · Cited by 878

Kinetics of biopolymerization on nucleic acid templates

MacDonald, C. T., Gibbs, J. H., & PIPKIN, A. C. (1968) · Biopolymers · doi:10.1002/bip.1968.360060102 · Cited by 843

Overflow metabolism in Escherichia coli results from efficient proteome allocation

Basan, M., Hui, S., Okano, H., Zhang, Z., Shen, Y., Williamson, J. R., & Hwa, T. (2015) · Nature · doi:10.1038/nature15765 · Cited by 785

Two Compounds implicated in the Function of the RC Gene of Escherichia coli

Cashel, M., & Gallant, J. (1969) · Nature · doi:10.1038/221838a0 · Cited by 769

Description of the Chemostat

Novick, A., & Szilard, L. (1950) · Science · doi:10.1126/science.112.2920.715 · Cited by 766

Nutrient sensing and TOR signaling in yeast and mammals

González, A., & Hall, M. N. (2017) · The EMBO Journal · doi:10.15252/embj.201696010 · Cited by 752

PROTEASES AND THEIR TARGETS IN ESCHERICHIA COLI

Gottesman, S. (1996) · Annual Review of Genetics · doi:10.1146/annurev.genet.30.1.465 · Cited by 733

Mature ribosomes are selectively degraded upon starvation by an autophagy pathway requiring the Ubp3p/Bre5p ubiquitin protease

Kraft, C., Deplazes, A., Sohrmann, M., & Peter, M. (2008) · Nature Cell Biology · doi:10.1038/ncb1723 · Cited by 733

Cell-Size Control and Homeostasis in Bacteria

Taheri-Araghi, S., Bradde, S., Sauls, J. T., Hill, N. S., Levin, P. A., Paulsson, J., Vergassola, M., & Jun, S. (2014) · Current Biology · doi:10.1016/j.cub.2014.12.009 · Cited by 715

Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

Klumpp, S., Zhang, Z., & Hwa, T. (2009) · Cell · doi:10.1016/j.cell.2009.12.001 · Cited by 703

Relationship between Cell Size and Time of Initiation of DNA Replication

Donachie, W. D. (1968) · Nature · doi:10.1038/2191077a0 · Cited by 688

Regulation of Cell Volume by Active Cation Transport in High and Low Potassium Sheep Red Cells

Tosteson, D. C., & Hoffman, J. F. (1960) · The Journal of General Physiology · doi:10.1085/jgp.44.1.169 · Cited by 673

ppGpp: a global regulator in Escherichia coli

Magnusson, L. U., Farewell, A., & Nyström, T. (2005) · Trends in Microbiology · doi:10.1016/j.tim.2005.03.008 · Cited by 644

Coordination of microbial metabolism

Chubukov, V., Gerosa, L., Kochanowski, K., & Sauer, U. (2014) · Nature Reviews Microbiology · doi:10.1038/nrmicro3238 · Cited by 611

Optimization of lag time underlies antibiotic tolerance in evolved bacterial populations

Fridman, O., Goldberg, A., Ronin, I., Shoresh, N., & Balaban, N. Q. (2014) · Nature · doi:10.1038/nature13469 · Cited by 603

Ecology and evolution of metabolic cross-feeding interactions in bacteria

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Coordination of Growth Rate, Cell Cycle, Stress Response, and Metabolic Activity in Yeast

Brauer, M. J., Huttenhower, C., Airoldi, E. M., Rosenstein, R., Matese, J. C., Gresham, D., Boer, V. M., Troyanskaya, O. G., & Botstein, D. (2008) · Molecular Biology of the Cell · doi:10.1091/mbc.e07-08-0779 · Cited by 558

mTOR-dependent activation of the transcription factor TIF-IA links rRNA synthesis to nutrient availabilityPreprint

Mayer, C., Zhao, J., Yuan, X., & Grummt, I. (2004) · Genes & Development · doi:10.1101/gad.285504 · Cited by 544

mTORC1 Controls Phase Separation and the Biophysical Properties of the Cytoplasm by Tuning Crowding

Delarue, M., Brittingham, G. P., Pfeffer, S., Surovtsev, I. V., Pinglay, S., Kennedy, K. J., Schaffer, M., Gutierrez, J. I., Sang, D., Poterewicz, G., et al. (2018) · Cell · doi:10.1016/j.cell.2018.05.042 · Cited by 543

Modulation of Chemical Composition and Other Parameters of the Cell at Different Exponential Growth Rates

Bremer, H., & Dennis, P. P. (2008) · EcoSal Plus · doi:10.1128/ecosal.5.2.3 · Cited by 539

Excessive Cell Growth Causes Cytoplasm Dilution And Contributes to Senescence

Neurohr, G. E., Terry, R. L., Lengefeld, J., Bonney, M., Brittingham, G. P., Moretto, F., Miettinen, T. P., Vaites, L. P., Soares, L. M., Paulo, J. A., et al. (2019) · Cell · doi:10.1016/j.cell.2019.01.018 · Cited by 518

Non-equilibrium statistical mechanics: from a paradigmatic model to biological transport

Chou, T., Mallick, K., & Zia, R. K. P. (2011) · Reports on Progress in Physics · doi:10.1088/0034-4885/74/11/116601 · Cited by 515

SURVEY AND SUMMARY Transcription by RNA polymerases I and III

Paule, M. R. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.6.1283 · Cited by 503

Regulation by proteolysis: energy-dependent proteases and their targets

Gottesman, S., & Maurizi, M. R. (1992) · Microbiological Reviews · doi:10.1128/mr.56.4.592-621.1992 · Cited by 496

TOR Regulates Ribosomal Protein Gene Expression via PKA and the Forkhead Transcription Factor FHL1

Martin, D. E., Soulard, A., & Hall, M. N. (2004) · Cell · doi:10.1016/j.cell.2004.11.047 · Cited by 492

Autophagy Is Required for Maintenance of Amino Acid Levels and Protein Synthesis under Nitrogen Starvation

Onodera, J., & Ohsumi, Y. (2005) · Journal of Biological Chemistry · doi:10.1074/jbc.m506736200 · Cited by 453

The RelA/SpoT homolog (RSH) superfamily: distribution and functional evolution of ppGpp synthetases and hydrolases across the tree of life.

Atkinson, G. C., Tenson, T., & Hauryliuk, V. (2011) · PLoS ONE · doi:10.1371/journal.pone.0023479 · Cited by 447

On being the right (cell) size

Ginzberg, M. B., Kafri, R., & Kirschner, M. W. (2015) · Science · doi:10.1126/science.1245075 · Cited by 445

Emergence of robust growth laws from optimal regulation of ribosome synthesis

Scott, M., Klumpp, S., Mateescu, E. M., & Hwa, T. (2014) · Molecular Systems Biology · doi:10.15252/msb.20145379 · Cited by 443

Coordination of bacterial proteome with metabolism by cyclic AMP signalling

You, C., Okano, H., Hui, S., Zhang, Z., Kim, M., Gunderson, C. W., Wang, Y.-P., Lenz, P., Yan, D., & Hwa, T. (2013) · Nature · doi:10.1038/nature12446 · Cited by 432

Stochasticity of metabolism and growth at the single-cell level

Kiviet, D. J., Nghe, P., Walker, N., Boulineau, S., Šunderlíková, V., & Tans, S. J. (2014) · Nature · doi:10.1038/nature13582 · Cited by 419

Mechanistic links between cellular trade-offs, gene expression, and growth

Weiße, A. Y., Oyarzún, D. A., Danos, V., & Swain, P. S. (2015) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1416533112 · Cited by 403

Proteases and protein degradation inEscherichia coli

Maurizi, M. R. (1992) · Cellular and Molecular Life Sciences · doi:10.1007/bf01923511 · Cited by 391

Burden-driven feedback control of gene expression

Ceroni, F., Boo, A., Furini, S., Gorochowski, T. E., Borkowski, O., Ladak, Y., Awan, A. R., Gilbert, C., Stan, G.-B. V., & Ellis, T. (2018) · Nature Methods · doi:10.1038/nmeth.4635 · Cited by 375

Quantitative proteomic analysis reveals a simple strategy of global resource allocation in bacteria

Hui, S., Silverman, J. M., Chen, S. S., Erickson, D. W., Basan, M., Wang, J., Hwa, T., & Williamson, J. R. (2015) · Molecular Systems Biology · doi:10.15252/msb.20145697 · Cited by 369

The Cost of Protein Production

Kafri, M., Metzl-Raz, E., Jona, G., & Barkai, N. (2015) · Cell Reports · doi:10.1016/j.celrep.2015.12.015 · Cited by 366

Studies on the role of ribonucleic acid in the growth of bacteria

Neidhardt, F. C., & Magasanik, B. (1960) · Biochimica et Biophysica Acta · doi:10.1016/0006-3002(60)90757-5 · Cited by 359

Totally asymmetric exclusion process with extended objects: A model for protein synthesis

Shaw, L. B., Zia, R. K. P., & Lee, K. H. (2003) · Physical review. E, Statistical physics, plasmas, fluids, and related interdisciplinary topics · doi:10.1103/physreve.68.021910 · Cited by 348

MacArthur's consumer-resource model

Chesson, P. (1990) · Theoretical Population Biology · doi:10.1016/0040-5809(90)90025-q · Cited by 341

Protein Synthesis upon Acute Nutrient Restriction Relies on Proteasome Function

Vabulas, R. M., & Hartl, F. U. (2005) · Science · doi:10.1126/science.1121925 · Cited by 339

Protein oxidation in response to increased transcriptional or translational errors

Dukan, S., Farewell, A., Ballesteros, M., Taddéi, F., Radman, M., & Nyström, T. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.100422497 · Cited by 334

The Synchronization of Replication and Division Cycles in Individual E. coli Cells

Wallden, M., Fange, D., Lundius, E. G., Baltekin, Ö., & Elf, J. (2016) · Cell · doi:10.1016/j.cell.2016.06.052 · Cited by 331

Cell Size Regulation in Bacteria

Amir, A. (2014) · Physical Review Letters · doi:10.1103/physrevlett.112.208102 · Cited by 319

Reduction of translating ribosomes enables Escherichia coli to maintain elongation rates during slow growth

Dai, X., Zhu, M., Warren, M., Balakrishnan, R., Patsalo, V., Okano, H., Williamson, J. R., Fredrick, K., Wang, Y., & Hwa, T. (2016) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.231 · Cited by 309

Bacterial growth laws and their applications

Scott, M., & Hwa, T. (2011) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2011.04.014 · Cited by 309

Dissection of the Mechanism for the Stringent Factor RelA

Wendrich, T. M., Blaha, G. M., Wilson, D. N., Marahiel, M. A., & Nierhaus, K. H. (2002) · Molecular Cell · doi:10.1016/s1097-2765(02)00656-1 · Cited by 300

Physical limits of cells and proteomes

Dill, K. A., Ghosh, K., & Schmit, J. D. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1114477108 · Cited by 298

Degradation of Abnormal Proteins in Escherichia coli

Goldberg, A. L. (1972) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.69.2.422 · Cited by 297

Concerning the kinetics of polypeptide synthesis on polyribosomes

MacDonald, C. T., & Gibbs, J. H. (1969) · Biopolymers · doi:10.1002/bip.1969.360070508 · Cited by 294

Molecular crowding limits translation and cell growth

Klumpp, S., Scott, M., Pedersen, S., & Hwa, T. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1310377110 · Cited by 293

Short-range interactions govern the dynamics and functions of microbial communities

Co, A. D., van Vliet, S., Kiviet, D. J., Schlegel, S., & Ackermann, M. (2020) · Nature Ecology & Evolution · doi:10.1038/s41559-019-1080-2 · Cited by 283

Metabolic exchanges are ubiquitous in natural microbial communities

Kost, C., Patil, K. R., Friedman, J., Garcia, S. L., & Ralser, M. (2023) · Nature Microbiology · doi:10.1038/s41564-023-01511-x · Cited by 281

Global Proteome Turnover Analyses of the Yeasts S. cerevisiae and S. pombe

Christiano, R., Nagaraj, N., Fröhlich, F., & Walther, T. C. (2014) · Cell Reports · doi:10.1016/j.celrep.2014.10.065 · Cited by 268

A universal trade-off between growth and lag in fluctuating environments

Basan, M., Honda, T., Christodoulou, D., Hörl, M., Chang, Y., Leoncini, E., Mukherjee, A., Okano, H., Taylor, B. R., Silverman, J. M., et al. (2020) · Nature · doi:10.1038/s41586-020-2505-4 · Cited by 263

Ecological modelling approaches for predicting emergent properties in microbial communities

van den Berg, N. I., Machado, D., Santos, S., Rocha, I., Chacón, J. M., Harcombe, W. R., Mitri, S., & Patil, K. R. (2022) · Nature Ecology & Evolution · doi:10.1038/s41559-022-01746-7 · Cited by 260

Mechanistic Origin of Cell-Size Control and Homeostasis in Bacteria

Si, F., Treut, G. L., Sauls, J. T., Vadia, S., Levin, P. A., & Jun, S. (2019) · Current Biology · doi:10.1016/j.cub.2019.04.062 · Cited by 259

Microorganisms maintain crowding homeostasis

van den Berg, J., Boersma, A. J., & Poolman, B. (2017) · Nature Reviews Microbiology · doi:10.1038/nrmicro.2017.17 · Cited by 245

How fast‐growing bacteria robustly tune their ribosome concentration to approximate growth‐rate maximization

Bosdriesz, E., Molenaar, D., Teusink, B., & Bruggeman, F. J. (2015) · FEBS Journal · doi:10.1111/febs.13258 · Cited by 244

Invariance of Initiation Mass and Predictability of Cell Size in Escherichia coli

Si, F., Li, D., Cox, S. E., Sauls, J. T., Azizi, O., Sou, C., Schwartz, A. B., Erickstad, M. J., Jun, Y., Li, X., et al. (2017) · Current Biology · doi:10.1016/j.cub.2017.03.022 · Cited by 243

The TOR signalling network from yeast to man

VIRGILIO, C. D., & Loewith, R. (2006) · The International Journal of Biochemistry & Cell Biology · doi:10.1016/j.biocel.2006.02.013 · Cited by 236

A global resource allocation strategy governs growth transition kinetics of Escherichia coli

Erickson, D. W., Schink, S. J., Patsalo, V., Williamson, J. R., Gerland, U., & Hwa, T. (2017) · Nature · doi:10.1038/nature24299 · Cited by 235

Cooperation Between RNA Polymerase Molecules in Transcription Elongation

Epshtein, V., & Nudler, E. (2003) · Science · doi:10.1126/science.1083219 · Cited by 234

LESS IS MORE: SELECTIVE ADVANTAGES CAN EXPLAIN THE PREVALENT LOSS OF BIOSYNTHETIC GENES IN BACTERIA

D’Souza, G. G., Waschina, S., Pande, S., Bohl, K., Kaleta, C., & Kost, C. (2014) · Evolution · doi:10.1111/evo.12468 · Cited by 231

Principles of cellular resource allocation revealed by condition-dependent proteome profiling

Metzl-Raz, E., Kafri, M., Yaakov, G., Soifer, I., Gurvich, Y., & Barkai, N. (2017) · eLife · doi:10.7554/elife.28034 · Cited by 228

Resource–diversity relationships in bacterial communities reflect the network structure of microbial metabolism

Bello, M. D., Lee, H., Goyal, A., & Gore, J. (2021) · Nature Ecology & Evolution · doi:10.1038/s41559-021-01535-8 · Cited by 228

Relative Rates of Surface and Volume Synthesis Set Bacterial Cell Size

Harris, L. K., & Theriot, J. A. (2016) · Cell · doi:10.1016/j.cell.2016.05.045 · Cited by 225

Cost of Unneeded Proteins in E. coli Is Reduced after Several Generations in Exponential Growth

Shachrai, I., Zaslaver, A., Alon, U. S., & Dekel, E. (2010) · Molecular Cell · doi:10.1016/j.molcel.2010.04.015 · Cited by 220

Bacterial growth: global effects on gene expression, growth feedback and proteome partition

Klumpp, S., & Hwa, T. (2014) · Current Opinion in Biotechnology · doi:10.1016/j.copbio.2014.01.001 · Cited by 218

Genome‐wide study of mRNA degradation and transcript elongation in Escherichia coli

Chen, H., Shiroguchi, K., Ge, H., & Xie, X. S. (2015) · Molecular Systems Biology · doi:10.15252/msb.20145794 · Cited by 216

Inflating bacterial cells by increased protein synthesis

Basan, M., Zhu, M., Dai, X., Warren, M., Sévin, D. C., Wang, Y., & Hwa, T. (2015) · Molecular Systems Biology · doi:10.15252/msb.20156178 · Cited by 211

The regulation of cell size and the control of mitosis

Fantes, P. A., Grant, W. D., Pritchard, R. H., Sudbery, P. E., & Wheals, A. E. (1975) · Journal of Theoretical Biology · doi:10.1016/0022-5193(75)90034-x · Cited by 203

Growth rate of Escherichia coli

Marr, A. G. (1991) · Microbiological Reviews · doi:10.1128/mr.55.2.316-333.1991 · Cited by 197

Macromolecular Composition During Steady-State Growth of Escherichia coli B/r

Dennis, P. P., & Bremer, H. (1974) · Journal of Bacteriology · doi:10.1128/jb.119.1.270-281.1974 · Cited by 196

The Innate Growth Bistability and Fitness Landscapes of Antibiotic-Resistant Bacteria

Deris, J. B., Kim, M., Zhang, Z., Okano, H., Hermsen, R., Groisman, A., & Terence Hwa, B. (2013) · Science · doi:10.1126/science.1237435 · Cited by 193

Fundamental principles in bacterial physiology—history, recent progress, and the future with focus on cell size control: a review

Jun, S., Si, F., Pugatch, R., & Scott, M. (2018) · Reports on Progress in Physics · doi:10.1088/1361-6633/aaa628 · Cited by 193

Complexity of the TOR signaling network

Inoki, K., & Guan, K. (2006) · Trends in Cell Biology · doi:10.1016/j.tcb.2006.02.002 · Cited by 191

Regulation of microbial growth by turgor pressure

Rojas, E., & Huang, K. C. (2017) · Current Opinion in Microbiology · doi:10.1016/j.mib.2017.10.015 · Cited by 190

Single-Cell Analysis of Growth in Budding Yeast and Bacteria Reveals a Common Size Regulation Strategy

Soifer, I., Robert, L., & Amir, A. (2016) · Current Biology · doi:10.1016/j.cub.2015.11.067 · Cited by 187

SYNCHRONIZATION OF CELL DIVISION

Campbell, A. (1957) · Bacteriological Reviews · doi:10.1128/br.21.4.263-272.1957 · Cited by 186

Homeostasis of protein and mRNA concentrations in growing cells

Lin, J., & Amir, A. (2018) · Nature Communications · doi:10.1038/s41467-018-06714-z · Cited by 186

The Classification and Evolution of Bacterial Cross-Feeding

Smith, N. W., Shorten, P. R., Altermann, E., Roy, N. C., & McNabb, W. C. (2019) · Frontiers in Ecology and Evolution · doi:10.3389/fevo.2019.00153 · Cited by 183

Systematic analysis of ribophagy in human cells reveals bystander flux during selective autophagy

An, H., & Harper, J. W. (2018) · Nature Cell Biology · doi:10.1038/s41556-017-0007-x · Cited by 181

Concerted control of Escherichia coli cell division

Osella, M., Nugent, E., & Lagomarsino, M. C. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1313715111 · Cited by 181

Association of RAP1 binding sites with stringent control of ribosomal protein gene transcription in Saccharomyces cerevisiae.

Moehle, C. M., & Hinnebusch, A. G. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.5.2723 · Cited by 178

Relevance and Regulation of Cell Density

Neurohr, G. E., & Amon, A. (2020) · Trends in Cell Biology · doi:10.1016/j.tcb.2019.12.006 · Cited by 176

Cell growth dilutes the cell cycle inhibitor Rb to trigger cell division

Zatulovskiy, E. A., Zhang, S., Berenson, D. F., Topacio, B. R., & Skotheim, J. M. (2020) · Science · doi:10.1126/science.aaz6213 · Cited by 170

The stop-and-go traffic regulating protein biogenesis: How translation kinetics controls proteostasis

Stein, K. C., & Frydman, J. (2018) · Journal of Biological Chemistry · doi:10.1074/jbc.rev118.002814 · Cited by 169

Control of production of ribosomal protein

Schleif, R. F. (1967) · Journal of Molecular Biology · doi:10.1016/0022-2836(67)90350-6 · Cited by 168

Bacterial growth laws reflect the evolutionary importance of energy efficiency

Maitra, A., & Dill, K. A. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1421138111 · Cited by 166

Drivers of Bacterial Maintenance and Minimal Energy Requirements

Kempes, C. P., van Bodegom, P. M., Wolpert, D. H., Libby, E., Amend, J. P., & Hoehler, T. M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00031 · Cited by 157

Protein Degradation in Escherichia coli

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Bacterial growth: a statistical physicist’s guide

Allen, R. J., & Waclaw, B. (2018) · Reports on Progress in Physics · doi:10.1088/1361-6633/aae546 · Cited by 153

Growth‐dependent bacterial susceptibility to ribosome‐targeting antibiotics

Greulich, P., Scott, M., Evans, M. R., & Allen, R. J. (2015) · Molecular Systems Biology · doi:10.15252/msb.20145949 · Cited by 152

The Stringent Response and Cell Cycle Arrest in Escherichia coli

Ferullo, D. J., & Lovett, S. T. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000300 · Cited by 150

Obligate cross-feeding expands the metabolic niche of bacteria

Oña, L., Giri, S., Avermann, N., Kreienbaum, M., Thormann, K. M., & Kost, C. (2021) · Nature Ecology & Evolution · doi:10.1038/s41559-021-01505-0 · Cited by 150

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

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