The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Robust registration of calcium images by learned contrast synthesis
Open accessAbstract
Multi-modal image registration is a challenging task that is vital to fuse complementary signals for subsequent analyses. Despite much research into cost functions addressing this challenge, there exist cases in which these are ineffective. In this work, we show that (1) this is true for the registration of in-vivo Drosophila brain volumes visualizing genetically encoded calcium indicators to an nc82 atlas and (2) that machine learning based contrast synthesis can yield improvements. More specifically, the number of subjects for which the registration outright failed was greatly reduced (from 40% to 15%) by using a synthesized image.
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Cites
Fiji: an open-source platform for biological-image analysis
Schindelin, J., Arganda-Carreras, I., Frise, E., Kaynig, V., Longair, M., Pietzsch, T., Preibisch, S., Rueden, C., Saalfeld, S., Schmid, B., et al. (2012) · Nature Methods · doi:10.1038/nmeth.2019 · Cited by 66,890
Self-citationDeformable medical image registration: a survey
Sotiras, A., Davatzikos, C., & Paragios, N. (2013) · IEEE Transactions on Medical Imaging · doi:10.1109/tmi.2013.2265603 · Cited by 1,587 · cited 1×
“[3] describe many approaches using image simulation or synthesis for registration.”
Method
Cited by
A connectome and analysis of the adult Drosophila central brain
Scheffer, L. K., Xu, C. S., Januszewski, M., Lu, Z., Takemura, S.-Y., Hayworth, K. J., Huang, G. B., Shinomiya, K., Maitlin-Shepard, J., Berg, S., et al. (2020) · eLife · doi:10.7554/elife.57443 · Cited by 1,128
Self-citationA Complete Electron Microscopy Volume of the Brain of Adult Drosophila melanogaster
Zheng, Z., Lauritzen, J. S., Perlman, E., Robinson, C. G., Nichols, M., Milkie, D., Torrens, O., Price, J., Fisher, C. B., Sharifi, N., et al. (2018) · Cell · doi:10.1016/j.cell.2018.06.019 · Cited by 1,050
Self-citationThe ImageJ ecosystem: Open‐source software for image visualization, processing, and analysis
Schroeder, A. B., Dobson, E. T. A., Rueden, C. T., Tomancak, P., Jug, F., & Eliceiri, K. W. (2021) · Protein Science · doi:10.1002/pro.3993 · Cited by 391
Whole-brain serial-section electron microscopy in larval zebrafish
Hildebrand, D. G. C., Cicconet, M., Torres, R. M., Choi, W., Quan, T. M., Moon, J., Wetzel, A. W., Scott Champion, A., Graham, B. J., Randlett, O., et al. (2017) · Nature · doi:10.1038/nature22356 · Cited by 375
Self-citationA TCF4-dependent gene regulatory network confers resistance to immunotherapy in melanoma
Pozniak, J., Pedri, D., Landeloos, E., Van Herck, Y., Antoranz, A., Vanwynsberghe, L., Nowosad, A., Roda, N., Makhzami, S., Bervoets, G., et al. (2024) · Cell · doi:10.1016/j.cell.2023.11.037 · Cited by 199
Metadata
- Authors
- Bogovic, J. A., Hanslovsky, P., Wong, A., & Saalfeld, S.
- Venue
- 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI)
- Publisher
- IEEE
- Published
- 2016-04
- Pages
- 1123-1126
- OpenAlex
- W2228548648
- Cited by
- 220
- References
- 2
- FWCI
- 1.06
- Type
- conference paper
- Language
- en
- Open access
- green
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- Bogovic, J. A., Hanslovsky, P., Wong, A., & Saalfeld, S. (2016). Robust registration of calcium images by learned contrast synthesis. 2016 IEEE 13th International Symposium on Biomedical Imaging (ISBI). https://doi.org/10.1109/isbi.2016.7493463
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