3D domain swapping: As domains continue to swap

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Items 401–500 of 686

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2. Novel structural features in two ZHX homeodomains derived from a systematic study of single and multiple domains
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4. Computational Enzyme Stabilization Can Affect Folding Energy Landscapes and Lead to Catalytically Enhanced Domain-Swapped Dimers
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5. The pentapeptide LQVVR plays a pivotal role in human cystatin C fibrillization
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6. Domain-Swapped Dimers of Intracellular Lipid-Binding Proteins: Evidence for Ordered Folding Intermediates
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7. Structural Aspects of Carbohydrate Recognition Mechanisms of C-Type Lectins
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8. New Aspects of Cytochrome c: 3D Domain Swapping, Membrane Interaction, Peroxidase Activity, and Met80 Sulfoxide Modification
   Shun Hirota, Satoshi Nagao · 2020 · Bulletin of the Chemical Society of Japan
9. Structural and Dynamic Properties of Incomplete Immunoglobulin-like Fold Domains
   Rita Berisio, Luciano Ciccarelli, Flavia Squeglia, Alfonso De Simone, Luigi Vitagliano · 2012 · Protein and Peptide Letters
10. Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome
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11. Crystal structure of ureidoglycolate hydrolase (AllA) from Escherichia coli O157:H7
    Stephane Raymond, Ante Tocilj, Eunice Ajamian, Yunge Li, Ming‐Ni Hung, Allan Matte, Mirosław Cygler · 2005 · Proteins Structure Function and Bioinformatics
12. Determination of Phosphorylation Sites for NADP-specific Isocitrate Dehydrogenase fromMycobacterium tuberculosis
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13. Structure and stability of recombinant bovine odorant-binding protein: I. Design and analysis of monomeric mutants
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14. Structural characterization of V57D and V57P mutants of human cystatin C, an amyloidogenic protein
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15. A transcription blocker isolated from a designed repeat protein combinatorial library by in vivo functional screen
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16. Proline 235 plays a key role in the regulation of the oligomeric states of Thermotoga maritima Arginine Binding Protein
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17. Rational Design of Protein-Specific Folding Modifiers
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19. The impact of solubility and electrostatics on fibril formation by the H3 and H4 histones
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20. An antibody loop replacement design feasibility study and a loop-swapped dimer structure
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21. Crystallographic studies on protein misfolding: Domain swapping and amyloid formation in the SH3 domain
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22. Domain swapping oligomerization of thermostable c-type cytochrome in E. coli cells
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23. Backbone 1H, 15N, and 13C Resonance Assignments and Secondary Structure of the Tollip CUE Domain
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24. Structural features of prions explored by sequence analysis. II. A PrP Sc model
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25. Comparison of backbone dynamics of monomeric and domain‐swapped stefin A
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26. CryoEM structure of a therapeutic antibody (favezelimab) bound to human LAG3 determined using a bivalent Fab as fiducial marker
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27. Formation and carbon monoxide‐dependent dissociation of Allochromatium vinosum cytochrome c′ oligomers using domain‐swapped dimers
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28. RNase A Domain-Swapped Dimers Produced Through Different Methods: Structure–Catalytic Properties and Antitumor Activity
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29. Role of Domain Swapping in the Hetero-Oligomeric Cytochrome b6f Lipoprotein Complex
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30. Efficient Induction of Nuclear Aggresomes by Specific Single Missense Mutations in the DNA-binding Domain of a Viral AP-1 Homolog
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31. New insight into serpin polymerization and aggregation
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32. Acidic pH promotes oligomerization and membrane insertion of the BclXL apoptotic repressor
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33. Sequence co-evolutionary information is a natural partner to minimally-frustrated models of biomolecular dynamics
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34. Domain swapping and SMYD1 interactions with the PWWP domain of human hepatoma-derived growth factor
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35. E. coli trp Repressor Forms a Domain-Swapped Array in Aqueous Alcohol
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36. Proline Is Not Uniquely Capable of Providing the Pivot Point for Domain Swapping in 2G12, a Broadly Neutralizing Antibody against HIV-1
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37. DDBASE2.0: updated domain database with improved identification of structural domains
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38. Structure and stability of recombinant bovine odorant-binding protein: II. Unfolding of the monomeric forms
    Olga V. Stepanenko, Denis O. Roginskii, Olesya V. Stepanenko, Irina М. Kuznetsova, Vladimir Nikolaevich Uversky, Туроверов Константин Константинович · 2016 · PeerJ
39. Benefits and constrains of covalency: the role of loop length in protein stability and ligand binding
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40. Exploring the Roles of Proline in Three-Dimensional Domain Swapping from Structure Analysis and Molecular Dynamics Simulations
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41. 3D domain swapping of azurin fromAlcaligenes xylosoxidans
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42. Divalent Ion Binding Properties of the Timothy Grass Allergen, Phl p 7
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43. Effect of methionine80 heme coordination on domain swapping of cytochrome c
    Shun Hirota, Nobuhiro Yamashiro, Zhonghua Wang, Satoshi Nagao · 2017 · JBIC Journal of Biological Inorganic Chemistry
44. Domain swapping dissection in Thermotoga maritima arginine binding protein: How structural flexibility may compensate destabilization
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45. Harnessing proteins for engineered living materials
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46. Production of a human neutralizing monoclonal antibody and its crystal structure in complex with ectodomain 3 of the interleukin-13 receptor α1
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47. Inhibition of Mitogen-activated Protein Kinase Phosphatase 3 Activity by Interdomain Binding
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48. Variable region domain exchange in human IgGs promotes antibody complex formation with accompanying structural changes and altered effector functions
    Lisa A. Chan, Martin L. Phillips, Letitia A. Wims, K. Ryan Trinh, Jerrod Denham, Sherie Leaver Morrison · 2004 · Molecular Immunology
49. The crystal structure of the domain-swapped dimer of onconase highlights some catalytic and antitumor activity features of the enzyme
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50. Oligomerization of ribonuclease A under reducing conditions
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51. The multiple forms of bovine seminal ribonuclease: Structure and stability of a C‐terminal swapped dimer
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52. Super folds, networks, and barriers
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53. Stability strengths and weaknesses in protein structures detected by statistical potentials: Application to bovine seminal ribonuclease
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54. Rational Design of Domain‐Swapping‐Based c‐Type Cytochrome Heterodimers by Using Chimeric Proteins
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55. Crystal structure of a domain‐swapped photoactivatable sfGFP variant provides evidence for GFP folding pathway
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56. Backbone chemical shift spectral assignments of SARS coronavirus-2 non-structural protein nsp9
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57. A Surface Loop Directs Conformational Switching of a Lipoyl Domain Between a Folded and a Novel Misfolded Structure
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58. Interaction of dimeric horse cytochrome c with cyanide ion
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59. Engineering allosteric regulation into the hinge region of a circularly permuted TEM-1 β-lactamase
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60. The crystal structure of the AF2331 protein from Archaeoglobus fulgidus DSM 4304 forms an unusual interdigitated dimer with a new type of α + β fold
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61. X-ray Structure of Catenated Lytic Transglycosylase SltB1
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62. Structure of the cold-shock domain protein fromNeisseria meningitidisreveals a strand-exchanged dimer
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63. Cataract as a Protein‐Aggregation Disease
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64. Identification and biophysical characterization of a novel domain-swapped camelid antibody specific for fentanyl
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67. Chain termini cross-talk in the swapping process of bovine pancreatic ribonuclease
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68. Structural basis of focal adhesion targeting domain-mediated signaling in cardiac hypertrophy
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69. Genome-Wide Prediction and Analysis of 3D-Domain Swapped Proteins in the Human Genome from Sequence Information
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70. Topological and Structural Plasticity of the Single Ig Fold and the Double Ig Fold Present in CD19
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71. Dimerization of Human Angiogenin and of Variants Involved in Neurodegenerative Diseases
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72. Lectins: An Overview
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75. C‐terminal β‐strand swapping in a consensus‐derived fibronectin Type III scaffold
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76. A Fraction of the BglG Transcriptional Antiterminator from Escherichia coli Exists as a Compact Monomer
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77. Current Progress in the Understanding of IgE-FcεRI Interaction
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78. Structural and thermodynamic insights into antibody light chain tetramer formation through 3D domain swapping
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79. Domain swapping of death domain superfamily: Alternative strategy for dimerization
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80. Mapping the architecture of the initiating phosphoglycosyl transferase from S. enterica O-antigen biosynthesis in a liponanoparticle
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