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Machine learning for image based species identification
Open accessAbstract
Accurate species identification is the basis for all aspects of taxonomic research and is an essential component of workflows in biological research. Biologists are asking for more efficient methods to meet the identification demand. Smart mobile devices, digital cameras as well as the mass digitisation of natural history collections led to an explosion of openly available image data depicting living organisms. This rapid increase in biological image data in combination with modern machine learning methods, such as deep learning, offers tremendous opportunities for automated species identification. In this paper, we focus on deep learning neural networks as a technology that enabled breakthroughs in automated species identification in the last 2 years. In order to stimulate more work in this direction, we provide a brief overview of machine learning frameworks applicable to the species identification problem. We review selected deep learning approaches for image based species identification and introduce publicly available applications. Eventually, this article aims to provide insights into the current state‐of‐the‐art in automated identification and to serve as a starting point for researchers willing to apply novel machine learning techniques in their biological studies. While modern machine learning approaches only slowly pave their way into the field of species identification, we argue that we are going to see a proliferation of these techniques being applied to the problem in the future. Artificial intelligence systems will provide alternative tools for taxonomic identification in the near future.
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Cites
Deep Residual Learning for Image Recognition
He, K., Zhang, X., Ren, S., & Sun, J. (2016) · 2016 IEEE Conference on Computer Vision and Pattern Recognition (CVPR) · doi:10.1109/cvpr.2016.90 · Cited by 235,474
ImageNet classification with deep convolutional neural networks
Krizhevsky, A., Sutskever, I., & Hinton, G. E. (2017) · Communications of the ACM · doi:10.1145/3065386 · Cited by 112,155
LeCun, Y., Bengio, Y., & Hinton, G. (2015) · Nature · doi:10.1038/nature14539 · Cited by 84,126
Gradient-based learning applied to document recognition
Lecun, Y., Bottou, L., Bengio, Y., & Haffner, P. (1998) · Proceedings of the IEEE · doi:10.1109/5.726791 · Cited by 58,805
Distinctive Image Features from Scale-Invariant Keypoints
Lowe, D. G. (2004) · International Journal of Computer Vision · doi:10.1023/b:visi.0000029664.99615.94 · Cited by 55,589
ImageNet Large Scale Visual Recognition Challenge
Russakovsky, O., Deng, J., Su, H., Krause, J., Satheesh, S., Ma, S., Huang, Z., Karpathy, A., Khosla, A., Bernstein, M., et al. (2015) · International Journal of Computer Vision · doi:10.1007/s11263-015-0816-y · Cited by 39,380
A survey on deep learning in medical image analysis
Litjens, G., Kooi, T., Bejnordi, B. E., Setio, A. A. A., Ciompi, F., Ghafoorian, M., van der Laak, J. A. W. M., van Ginneken, B., & Sánchez, C. I. (2017) · Medical Image Analysis · doi:10.1016/j.media.2017.07.005 · Cited by 15,332
Accelerated modern human–induced species losses: Entering the sixth mass extinction
Ceballos, G., Ehrlich, P. R., Barnosky, A. D., García, A., Pringle, R. M., & Palmer, T. M. (2015) · Science Advances · doi:10.1126/sciadv.1400253 · Cited by 4,220
Azevedo, F. A. C., Carvalho, L. R. B., Grinberg, L. T., Farfel, J. M., Ferretti, R. E. L., Leite, R. E. P., Filho, W. J., Lent, R., & Herculano‐Houzel, S. (2009) · Journal of Comparative Neurology · doi:10.1002/cne.21974 · Cited by 2,337
Swanson, A., Kosmala, M., Lintott, C., Simpson, R., Smith, A., & Packer, C. (2015) · Scientific Data · doi:10.1038/sdata.2015.26 · Cited by 510
Research works printed but not linked: 34
- Affouard A. Goeau H. Bonnet P. Lombardo J. C. &Joly A. (2017).Pl@ ntNet app in the era of deep learning. In ICLR 2017 Workshop Track‐5th International Conference on Learning Representations.
- 10.1038/srep33634 · doi:10.1038/srep33634
- 10.1109/TPAMI.2013.50 · DOI · Paper page
- 10.1186/s12862-017-1014-z · DOI · Paper page
- 10.1016/j.compag.2017.08.005 · DOI · Paper page
- 10.1016/j.eswa.2012.01.073 · DOI · Paper page
- 10.1525/bio.2013.63.11.8 · doi:10.1525/bio.2013.63.11.8
- 10.1007/978-3-642-46466-9_18 · DOI · Paper page
- 10.1016/j.ecoinf.2017.07.004 · DOI · Paper page
- 10.1007/s11263-018-1093-3 · DOI
- 10.1017/S1367943002002299 · DOI · Paper page
- 10.1007/s00530-015-0462-9 · DOI
- 10.1109/TIP.2018.2836321 · DOI
- 10.1371/journal.pone.0192011 · DOI
- 10.1016/j.patcog.2016.12.020 · DOI · Paper page
- 10.1126/science.293.5537.2051 · DOI · Paper page
- 10.1007/978-3-319-70353-4_13 · DOI · Paper page
- 10.1073/pnas.1719367115 · DOI · Paper page
- 10.1016/j.neucom.2015.10.122 · DOI · Paper page
- 10.1109/CVAUI.2016.020 · DOI
- 10.1186/s13007-017-0245-8 · DOI
- 10.1002/lom3.10113 · DOI · Paper page
- 10.3897/BDJ.5.e21139 · DOI
- 10.1371/journal.pone.0170629 · DOI
- Simonyan K. &Zisserman A. (2014).Very deep convolutional networks for large‐scale image recognition. arXiv preprint arXiv:1409.1556. · arXiv
- 10.3732/ajb.1700281 · DOI · Paper page
- Sonka M., 2014, Image processing, analysis, and machine vision
- Szegedy C. Liu W. Jia Y. Sermanet P. Reed S. Anguelov D. …Rabinovich A. (2015).Going deeper with convolutions. The IEEE Conference on Computer Vision and Pattern Recognition (CVPR). · DOI · Paper page
- Van Horn G. Mac Aodha O. Song Y. Shepard A. Adam H. Perona P. &Belongie S. (2017).The iNaturalist Challenge 2017 Dataset. arXiv preprint arXiv:1707.06642. · arXiv
- 10.1007/s11831-016-9206-z · DOI · Paper page
- 10.1371/journal.pcbi.1005993 · DOI · Paper page
- 10.1111/1365-2656.12780 · DOI · Paper page
- 10.1016/j.tree.2017.03.015 · DOI · Paper page
- 10.1186/s12859-018-2201-7 · DOI · Paper page
Cited by
Perspectives in machine learning for wildlife conservation
Tuia, D., Kellenberger, B., Beery, S., Costelloe, B. R., Zuffi, S., Risse, B., Mathis, A., Mathis, M. W., van Langevelde, F., Burghardt, T., et al. (2022) · Nature Communications · doi:10.1038/s41467-022-27980-y · Cited by 740
Applications for deep learning in ecology
Christin, S., Hervet, É., & Lecomte, N. (2019) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13256 · Cited by 724
Terry, J. C. D., Roy, H. E., & August, T. A. (2020) · Methods in Ecology and Evolution · doi:10.1111/2041-210x.13335 · Cited by 92
Chemometric-Guided Approaches for Profiling and Authenticating Botanical Materials
Abraham, E. J., & Kellogg, J. J. (2021) · Frontiers in Nutrition · doi:10.3389/fnut.2021.780228 · Cited by 64
MERRC: A Memristor-Enabled Reconfigurable Low-Power Reservoir Computing Architecture at the Edge
Nowshin, F., Huang, Y., Sarkar, M. R., Xia, Q., & Yi, Y. (2024) · IEEE Transactions on Circuits and Systems I: Regular Papers · doi:10.1109/tcsi.2023.3329337 · Cited by 12
Metadata
- Authors
- Wäldchen, J., & Mäder, P.
- Venue
- Methods in Ecology and Evolution
- Publisher
- Wiley
- Published
- 2018-09-06
- Volume
- 9
- Issue
- 11
- Pages
- 2216-2225
- ISSN
- 2041-210X (ISSN-L)
- OpenAlex
- W2885150722
- Cited by
- 504
- References
- 10
- FWCI
- 17.57
- Type
- journal article
- Language
- en
- Open access
- bronze
- Funders
- Bundesministerium für Bildung und Forschung (01LC1319A and 01LC1319B)
- Bundesministerium für Umwelt, Naturschutz, Bau und Reaktorsicherheit (3514 685C19)
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Data sources
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
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