Changes in the intestinal bacterial community during the growth of white shrimp, Litopenaeus vannamei
Abstract
In this study, we documented the changes in the intestinal bacterial community at four stages in Litopenaeus vannamei: 14 days postlarvae (L14) and 1-, 2- and 3-month old juveniles (J1, J2, J3), using 454 pyrosequencing techniques. The intestinal bacterial community was dominated by three bacterial phyla, Proteobacteria, Bacteroidetes and Actinobacteria at all stages. However, the relative abundance and bacterial lineages varied at the family level. The intestinal bacterial community of L14 and J1 was similar, with dominant members belonging to the Comamonadaceae of Betaproteobacteria. Conversely, bacterial members affiliated to Flavobacteriaceae of Bacteroidetes were dominant in J2 and Vibrionaceae of Gammaproteobacteria was dominant in J3. The abundance of Microbacteriaceae of Actinobacteria also fluctuated during the four stages. Bacterial members of Flavobacteriaceae and Rhodobacteraceae (Alphaproteobacteria) were present through all growth stages, and likely form the intestinal core microbiome of L. vannamei. However, they varied at the operational taxonomic unit (OTU) level through the growth stages. The intestinal bacterial community of pond-rearing shrimp included the three main bacterial phyla identified above, and an additional group, Mycoplasmataceae of Mollicutes. Our results demonstrate that the intestinal bacterial community of L. vannamei was highly dynamic during the growth stages. Bacterial members belonging to Commamonadaceae dominated in the earlier growth stage of shrimp, possibly influenced by feeding with Artemia nauplii, but there was a shift to Flavobacteriaceae in the mid and Vibrionaceae in the late growth stages.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Vibrionaceae, Rhodobacteraceae, Flavobacteriaceae, Pseudoalteromonadaceae, Oceanospirillaceae, Colwelliaceae, and Alteromonadaceae have been found in larvae and adults of different shrimp species.
“Thus, Vibrionaceae, Rhodobacteraceae, Flavobacteriaceae, Pseudoalteromonadaceae, Oceanospirillaceae, Colwelliaceae, and Alteromonadaceae were found in larvae and adults of different shrimp species.”
From The Active Microbiota of the Eggs and the Nauplii of the Pacific Blue Shrimp Litopenaeus stylirostris Partially Shaped by a Potential Vertical Transmission (2022) · cites this paper as Huang et al., 2016
Cites
MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.
Tamura, K., Stecher, G., Peterson, D., Filipski, A., & Kumar, S. (2013) · Molecular biology and evolution · doi:10.1093/molbev/mst197 · Cited by 41,174 · see citing works
BLAST+: architecture and applications
Camacho, C., Coulouris, G., Avagyan, V., Ma, N., Papadopoulos, J., Bealer, K., & Madden, T. L. (2009) · BMC Bioinformatics · doi:10.1186/1471-2105-10-421 · Cited by 22,074 · see citing works
Schloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 20,966 · see citing works
Naive Bayesian Classifier for Rapid Assignment of rRNA Sequences into the New Bacterial Taxonomy
Wang, Q., Garrity, G. M., Tiedje, J. M., & Cole, J. R. (2007) · Applied and Environmental Microbiology · doi:10.1128/aem.00062-07 · Cited by 19,770 · see citing works
PAST: PALEONTOLOGICAL STATISTICAL SOFTWARE PACKAGE FOR EDUCATION AND DATA ANALYSIS
Hammer, Ø., Harper, D. A. T., & Ryan, P. D. (2001) · Palaeontologia Electronica · Cited by 17,871 · see citing works
Diversity of the Human Intestinal Microbial Flora
Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent, M., Gill, S. R., Nelson, K. E., & Relman, D. A. (2005) · Science · doi:10.1126/science.1110591 · Cited by 7,913 · see citing works
A core gut microbiome in obese and lean twins
Turnbaugh, P. J., Hamady, M., Yatsunenko, T., Cantarel, B. L., Duncan, A., Ley, R. E., Sogin, M. L., Jones, W. J., Roe, B. A., Affourtit, J. P., et al. (2009) · Nature · doi:10.1038/nature07540 · Cited by 7,823 · see citing works
Pruesse, E., Quast, C., Knittel, K., Fuchs, B. M., Ludwig, W., Peplies, J., & Glöckner, F. O. (2007) · Nucleic Acids Research · doi:10.1093/nar/gkm864 · Cited by 6,682 · see citing works
Evolution of mammals and their gut microbes
Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747 · see citing works
Microbial diversity in the deep sea and the underexplored “rare biosphere”
Sogin, M. L., Morrison, H. G., Huber, J. A., Welch, D. B. M., Huse, S. M., Neal, P. R., Arrieta, J. M., & Herndl, G. J. (2006) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0605127103 · Cited by 3,683 · see citing works
MEGAN analysis of metagenomic dataPreprint
Huson, D. H., Auch, A. F., Qi, J., & Schuster, S. C. (2007) · Genome Research · doi:10.1101/gr.5969107 · Cited by 3,294 · see citing works
A framework for human microbiome research
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11209 · Cited by 2,650 · see citing works
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Schloss, P. D., Gevers, D., & Westcott, S. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027310 · Cited by 2,112 · see citing works
Diversity and heritability of the maize rhizosphere microbiome under field conditions
Peiffer, J. A., Spor, A., Koren, O., Jin, Z. Y., Green, S., Dangl, J. L., Buckler, E. S., & Ley, R. E. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1302837110 · Cited by 1,827 · see citing works
Evidence for a core gut microbiota in the zebrafish
Roeselers, G., Mittge, E., Stephens, W. Z., Parichy, D. M., Cavanaugh, C. M., Guillemin, K. J., & Rawls, J. F. (2011) · The ISME Journal · doi:10.1038/ismej.2011.38 · Cited by 1,145 · see citing works
Microbial diversity of intestinal contents and mucus in rainbow trout (Oncorhynchus mykiss)
Kim, D.-H., Brunt, J., & Austin, B. P. (2006) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2006.03185.x · Cited by 366 · see citing works
The presence, nature, and role of gut microflora in aquatic invertebrates: A synthesis
Harris, J. M. (1993) · Microbial Ecology · doi:10.1007/bf00171889 · Cited by 357 · see citing works
The inconstant gut microbiota of Drosophila species revealed by 16S rRNA gene analysis
Wong, A. C.-N., Chaston, J. M., & Douglas, A. E. (2013) · The ISME Journal · doi:10.1038/ismej.2013.86 · Cited by 317 · see citing works
Distinct antimicrobial peptide expression determines host species-specific bacterial associations
Franzenburg, S., Walter, J., Künzel, S., Wang, J., Baines, J. F., Bosch, T. C. G., & Fraune, S. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1304960110 · Cited by 308 · see citing works
King, G. M., Judd, C., Kuske, C. R., & Smith, C. B. (2012) · PLoS ONE · doi:10.1371/journal.pone.0051475 · Cited by 263 · see citing works
Liu, C., Cheng, W., Hsu, J., & Chen, J. (2004) · Diseases of Aquatic Organisms · doi:10.3354/dao061169 · Cited by 242 · see citing works
Nimrat, S., Suksawat, S., Boonthai, T., & Vuthiphandchai, V. (2012) · Veterinary Microbiology · doi:10.1016/j.vetmic.2012.04.029 · Cited by 182 · see citing works
Rungrassamee, W., Klanchui, A., Chaiyapechara, S., Maibunkaew, S., Tangphatsornruang, S., Jiravanichpaisal, P., & Karoonuthaisiri, N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0060802 · Cited by 179 · see citing works
Metamorphosis of a Butterfly-Associated Bacterial Community
Hammer, T. J., McMillan, W. O., & Fierer, N. (2014) · PLoS ONE · doi:10.1371/journal.pone.0086995 · Cited by 169 · see citing works
Zhang, Q., Tan, B., Mai, K., Zhang, W., Ma, H., Ai, Q., Wang, X., & Liufu, Z. (2010) · Aquaculture Research · doi:10.1111/j.1365-2109.2010.02677.x · Cited by 146 · see citing works
Thompson, J., Gregory, S. P., Plummer, S. F., Shields, R. J., & Rowley, A. F. (2010) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2010.04743.x · Cited by 114 · see citing works
Haldar, S., Chatterjee, S., Sugimoto, N., Das, S., Chowdhury, N., Hinenoya, A., Asakura, M., & Yamasaki, S. (2010) · Microbiology · doi:10.1099/mic.0.041475-0 · Cited by 75 · see citing works
Lin, H., Guo, Z., Yang, Y., Zheng, W., & Li, Z. J. (2004) · Aquaculture Research · doi:10.1111/j.1365-2109.2004.01169.x · Cited by 71 · see citing works
Phylogenetic analysis of intestinal bacteria in the Chinese mitten crab (Eriocheir sinensis)
Li, K., Guan, W., Wei, G., Liu, B., Xu, J. Y., Zhao, L., & Zhang, Y. (2007) · Journal of Applied Microbiology · doi:10.1111/j.1365-2672.2007.03295.x · Cited by 67 · see citing works
Høj, L., Bourne, D. G., & Hall, M. R. (2009) · Aquaculture · doi:10.1016/j.aquaculture.2009.04.024 · Cited by 67 · see citing works
Huang, Z., Guo, F., Zhao, J., Li, W., & Ke, C. (2010) · Aquaculture Research · doi:10.1111/j.1365-2109.2010.02577.x · Cited by 59 · see citing works
Self-citationWang, L., Chen, Y., Huang, H., Huang, Z., Chen, H., & Shao, Z. (2013) · Aquaculture Research · doi:10.1111/are.12191 · Cited by 57 · see citing works
Self-citationPyrosequencing-An Alternative to Traditional Sanger Sequencing
Fakruddin, M., & Chowdhury, A. (2012) · American journal of biochemistry & biotechnology/American journal of biochemistry and biotechnology · doi:10.3844/ajbbsp.2012.14.20 · Cited by 54 · see citing works
Changes in the Gut Microbiome of the Sea Lamprey during Metamorphosis
Tetlock, A., Yost, C. K., Stavrinides, J., & Manzon, R. G. (2012) · Applied and Environmental Microbiology · doi:10.1128/aem.01640-12 · Cited by 44 · see citing works
Tkavc, R., Ausec, L., Oren, A., & Gunde‐Cimerman, N. (2011) · FEMS Microbiology Ecology · doi:10.1111/j.1574-6941.2011.01112.x · Cited by 38 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
Effect of dietary components on the gut microbiota of aquatic animals. A never‐ending story?
Ringø, E., Zhou, Z., Vecino, J. L. G., Wadsworth, S., Romero, J., Krogdahl, Å., Olsen, R. E., Dimitroglou, A., Foey, A., Davies, S. J., et al. (2015) · Aquaculture Nutrition · doi:10.1111/anu.12346 · Cited by 715 · see citing works
Understanding the role of the shrimp gut microbiome in health and disease
Holt, C. C., Bass, D., Stentiford, G. D., & van der Giezen, M. (2020) · Journal of Invertebrate Pathology · doi:10.1016/j.jip.2020.107387 · Cited by 368 · see citing works
Gut Microbiota and its Modulation for Healthy Farming of Pacific White ShrimpLitopenaeus vannamei
Li, E., Xu, C., Wang, X., Wang, S., Zhao, Q., Zhang, M., Qin, J. G., & Chen, L. (2018) · Reviews in Fisheries Science & Aquaculture · doi:10.1080/23308249.2018.1440530 · Cited by 304 · see citing works
Cornejo-Granados, F., Lopez-Zavala, A. A., Gallardo-Becerra, L., Mendoza-Vargas, A., Sánchez, F., Vichido, R., Brieba, L. G., Viana, M. T., Sotelo-Mundo, R. R., & Ochoa-Leyva, A. (2017) · Scientific Reports · doi:10.1038/s41598-017-11805-w · Cited by 302 · see citing works
Xiong, J., Zhu, J., Dai, W., Dong, C., Qiu, Q., & Li, C. (2017) · Environmental Microbiology · doi:10.1111/1462-2920.13701 · Cited by 289 · see citing works
Huang, F., Pan, L., Song, M., Tian, C., & Gao, S. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-9229-5 · Cited by 177 · see citing works
Healthy microbiome: a key to successful and sustainable shrimp aquaculture
Rajeev, R., Adithya, K. K., Kiran, G. S., & Selvin, J. (2020) · Reviews in Aquaculture · doi:10.1111/raq.12471 · Cited by 175 · see citing works
Zheng, Y., Yu, M., Liu, J., Qiao, Y., Wang, L., Li, Z., Zhang, X.-H., & Yu, M. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.01362 · Cited by 165 · see citing works
Self-citationDuan, Y., Wang, Y., Dong, H., Ding, X., Liu, Q., Li, H., Zhang, J., & Xiong, D. (2018) · Frontiers in Microbiology · doi:10.3389/fmicb.2018.02191 · Cited by 157 · see citing works
Aquaculture industry prospective from gut microbiome of fish and shellfish: An overview
Diwan, A. D., Harke, S. N., Gopalkrishna, & Panche, A. N. (2021) · Journal of Animal Physiology and Animal Nutrition · doi:10.1111/jpn.13619 · Cited by 157 · see citing works
Cornejo‐Granados, F., Gallardo-Becerra, L., Leonardo-Reza, M., Ochoa‐Romo, J. P., & Ochoa‐Leyva, A. (2018) · PeerJ · doi:10.7717/peerj.5382 · Cited by 145 · see citing works
Gao, S., Pan, L., Huang, F., Song, M., Tian, C., & Zhang, M. (2018) · Aquaculture · doi:10.1016/j.aquaculture.2018.09.026 · Cited by 138 · see citing works
Zheng, Y., Yu, M., Liu, Y., Su, Y., Xu, T., Yu, M., & Zhang, X.-H. (2015) · Aquaculture · doi:10.1016/j.aquaculture.2015.09.020 · Cited by 133 · see citing works
Fan, J., Chen, L., Mai, G., Zhang, H., Yang, J., Deng, D., & Ma, Y. (2019) · Scientific Reports · doi:10.1038/s41598-018-37042-3 · Cited by 131 · see citing works
Xie, J.-J., Liu, Q.-Q., Liao, S., Fang, H., Yin, P., Xie, S., Tian, L., Liu, Y., & Niu, J. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.04.301 · Cited by 131 · see citing works
Xiong, J., Dai, W., & Li, C. (2016) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-016-7679-1 · Cited by 130 · see citing works
Wang, Y., Wang, K., Huang, L., Dong, P., Wang, S., Chen, H., Lu, Z., Hou, D., & Zhang, D. (2020) · Microbiome · doi:10.1186/s40168-020-00879-w · Cited by 126 · see citing works
Zoqratt, M. Z. H. M., Eng, W. W. H., Thai, B. T., Austin, C. M., & Gan, H. M. (2018) · PeerJ · doi:10.7717/peerj.5826 · Cited by 126 · see citing works
Response of host–bacterial colonization in shrimp to developmental stage, environment and disease
Xiong, J., Dai, W., Qiu, Q., Zhu, J., Yang, W., & Li, C. (2018) · Molecular Ecology · doi:10.1111/mec.14822 · Cited by 123 · see citing works
Progress in the gut microbiota in exploring shrimp disease pathogenesis and incidence
Xiong, J. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-9199-7 · Cited by 108 · see citing works
Foysal, M. J., Fotedar, R. K., Siddik, M. A. B., & Tay, C. Y. (2020) · Scientific Reports · doi:10.1038/s41598-020-62655-y · Cited by 107 · see citing works
Goh, J. X. H., Tan, L. T., Law, J. W., Ser, H., Khaw, K. Y., Letchumanan, V., Lee, L., & Goh, B. H. (2022) · Reviews in Aquaculture · doi:10.1111/raq.12659 · Cited by 101 · see citing works
Chen, C.-Y., Chen, P., Weng, F. C.-H., Shaw, G. T.-W., & Wang, D. (2017) · PLoS ONE · doi:10.1371/journal.pone.0181427 · Cited by 99 · see citing works
Host-microbiome interaction in fish and shellfish: An overview
Diwan, A. D., Harke, S. N., & Panche, A. N. (2023) · Fish and Shellfish Immunology Reports · doi:10.1016/j.fsirep.2023.100091 · Cited by 96 · see citing works
Duan, Y., Wang, Y., Liu, Q., Dong, H., Li, H., Xiong, D., & Zhang, J. (2019) · Scientific Reports · doi:10.1038/s41598-019-42939-8 · Cited by 89 · see citing works
Zheng, X., Fu, D., Cheng, J., Tang, R., Chu, M., Chu, P., Wang, T., & Yin, S. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.736945 · Cited by 87 · see citing works
Qian, D., Xu, C., Chen, C., Qin, J. G., Chen, L., & Li, E. (2020) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2020.03.018 · Cited by 85 · see citing works
Huang, L., Guo, H., Chen, C., Huang, X., Chen, W., Bao, F., Liu, W., Wang, S., & Zhang, D. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735159 · Cited by 82 · see citing works
Growth and health responses to a long-term pH stress in Pacific white shrimp Litopenaeus vannamei
Yu, Q., Xie, J., Huang, M., Chen, C., Qian, D., Qin, J. G., Chen, L., Jia, Y., & Li, E. (2020) · Aquaculture Reports · doi:10.1016/j.aqrep.2020.100280 · Cited by 79 · see citing works
Liu, J., Wang, K., Wang, Y., Chen, W., Jin, Z., Yao, Z., & Zhang, D. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.01.026 · Cited by 78 · see citing works
Changes in the intestine barrier function of Litopenaeus vannamei in response to pH stress
Duan, Y., Wang, Y., Liu, Q., Zhang, J., & Xiong, D. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.02.047 · Cited by 75 · see citing works
Cheung, M. K., Yip, H. Y., Nong, W., Law, P. T. W., Chu, K. H., Kwan, H. S., & Hui, J. H. L. (2015) · Marine Biotechnology · doi:10.1007/s10126-015-9662-8 · Cited by 78 · see citing works
Tepaamorndech, S., Nookaew, I., Higdon, S. M., Santiyanont, P., Phromson, M., Chantarasakha, K., Mhuantong, W., Plengvidhya, V., & Visessanguan, W. (2020) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2020.08.042 · Cited by 77 · see citing works
Yao, Z., Yang, K., Huang, L., Huang, X., Qiuqian, L., Wang, K., & Zhang, D. (2018) · AMB Express · doi:10.1186/s13568-018-0644-x · Cited by 76 · see citing works
Hostins, B., Lara, G., Decamp, O., Cesar, D. E., & Wasielesky, W. (2017) · Aquaculture · doi:10.1016/j.aquaculture.2017.07.036 · Cited by 75 · see citing works
Su, H., Hu, X., Xu, Y., Xu, W., Huang, X., Wen, G., Yang, K., Li, Z., & Cao, Y. (2018) · Environment International · doi:10.1016/j.envint.2018.07.007 · Cited by 74 · see citing works
Zhang, M., Pan, L., Fan, D., He, J., Su, C., Gao, S., & Zhang, M. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735703 · Cited by 75 · see citing works
Foysal, M. J., Fotedar, R. K., Tay, C. Y., & Gupta, S. K. (2019) · PeerJ · doi:10.7717/peerj.6891 · Cited by 72 · see citing works
Lactic Acid Bacteria in Shellfish: Possibilities and Challenges
Ringø, E., Doan, H. V., Lee, S., & Song, S. K. (2019) · Reviews in Fisheries Science & Aquaculture · doi:10.1080/23308249.2019.1683151 · Cited by 68 · see citing works
Amoah, K., Huang, Q., Dong, X., Tan, B., Zhang, S., Chi, S., Yang, Q., Liu, H., & Yang, Y. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.734563 · Cited by 66 · see citing works
Dong, J., Li, X., Zhang, R., Zhao, Y., Wu, G., Liu, J., Zhu, X., & Li, L. (2018) · AMB Express · doi:10.1186/s13568-018-0722-0 · Cited by 64 · see citing works
Self-citationLandsman, A., St‐Pierre, B., Rosales-Leija, M., Brown, M. L., & Gibbons, W. R. (2019) · Microorganisms · doi:10.3390/microorganisms7040093 · Cited by 64 · see citing works
Wang, R., Guo, Z., Tang, Y., Kuang, J., Duan, Y., Lin, H., Jiang, S., Shu, H., & Huang, J. (2020) · AMB Express · doi:10.1186/s13568-020-01041-3 · Cited by 62 · see citing works
Dai, W., Yu, W., Xuan, L., Tao, Z., & Xiong, J. (2018) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-018-8891-y · Cited by 62 · see citing works
Analysis of microbiota in the stomach and midgut of two penaeid shrimps during probiotic feeding
Imaizumi, K., Tinwongger, S., Kondo, H., & Hırono, I. (2021) · Scientific Reports · doi:10.1038/s41598-021-89415-w · Cited by 59 · see citing works
Wang, C., Zhou, Y., Lv, D., Ge, Y., Li, H., & You, Y. (2018) · MicrobiologyOpen · doi:10.1002/mbo3.727 · Cited by 59 · see citing works
Duan, Y., Wang, Y., Ding, X., Xiong, D., & Zhang, J. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.734762 · Cited by 58 · see citing works
Huynh, T.-G., Hu, S., Chiu, C.-S., Truong, Q.-P., & Liu, C. (2019) · Aquaculture Research · doi:10.1111/are.13951 · Cited by 57 · see citing works
Gainza, O., & Romero, J. (2020) · Scientific Reports · doi:10.1038/s41598-020-59587-y · Cited by 58 · see citing works
Bacterial analysis in the early developmental stages of the black tiger shrimp (Penaeus monodon)
Angthong, P., Uengwetwanit, T., Arayamethakorn, S., Chaitongsakul, P., Karoonuthaisiri, N., & Rungrassamee, W. (2020) · Scientific Reports · doi:10.1038/s41598-020-61559-1 · Cited by 58 · see citing works
Han, Z., Li, K., Shahzad, M. A., Zhang, H., Luo, H., Qiu, G., Lan, Y., Wang, X., Mehmood, K., & Li, J. (2017) · Microbial Pathogenesis · doi:10.1016/j.micpath.2017.08.025 · Cited by 57 · see citing works
Liu, Y., Wang, J., Ding, J., Zhang, Y., Hou, C.-C., Shen, W., Wu, X., & Zhu, J. (2023) · Aquaculture · doi:10.1016/j.aquaculture.2023.740444 · Cited by 52 · see citing works
Li, K., Mehmood, K., Zhang, H., Jiang, X., Shahzad, M. A., Dong, X., & Li, J. (2018) · Acta Tropica · doi:10.1016/j.actatropica.2018.02.017 · Cited by 51 · see citing works
Impact of ocean acidification on the intestinal microflora of the Pacific oyster Crassostrea gigas
Kong, N., Han, S., Fu, Q., Yu, Z., Wang, L., & Song, L. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.737365 · Cited by 50 · see citing works
Self-citationDu, Y., Xu, W., Wu, T., Li, H., Hu, X., & Chen, J. (2022) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2022.08.066 · Cited by 51 · see citing works
Ooi, M. C., Goulden, E. F., Smith, G. G., Nowak, B. F., & Bridle, A. R. (2017) · FEMS Microbiology Ecology · doi:10.1093/femsec/fix159 · Cited by 51 · see citing works
Pinoargote, G., Flores, G. E., Cooper, K. K., & Ravishankar, S. (2018) · Aquaculture Research · doi:10.1111/are.13791 · Cited by 50 · see citing works
Cheng, A., Yeh, S., Hu, S., Lin, H., & Liu, C. (2019) · Aquaculture Research · doi:10.1111/are.14345 · Cited by 48 · see citing works
A review of shrimp aquaculture and factors affecting the gut microbiome
El‐Saadony, M. T., Shehata, A. M., Alagawany, M. M., Abdel‐Moneim, A. E., Selim, D. A.-F., Abdo, M., Khafaga, A. F., El-Tarabily, K. A., El-Shall, N. A., & El-Hack, M. E. A. (2022) · Aquaculture International · doi:10.1007/s10499-022-00936-1 · Cited by 52 · see citing works
Gainza, O., Ramírez, C., Ramos, A. S., & Romero, J. (2017) · Microbial Ecology · doi:10.1007/s00248-017-1066-z · Cited by 47 · see citing works
Sun, S., Yang, M., Fu, H., Ge, X., & Zou, J. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735431 · Cited by 47 · see citing works
Liao, G., Wu, Q., Mo, B., Zhou, J. F., Li, J., Zou, J., & Fan, L. (2022) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2022.01.026 · Cited by 47 · see citing works
Liu, Z., Li, J., Wang, Y., Iqbal, M., Zheng, A., Zhao, M., Li, Z., Wang, N., Wu, C., & Yu, D. (2020) · Microbial Cell Factories · doi:10.1186/s12934-020-01383-4 · Cited by 46 · see citing works
Amoah, K., Dong, X., Tan, B., Zhang, S., Chi, S., Yang, Q., Liu, H., Yang, Y., & Zhang, H. (2021) · Animal Feed Science and Technology · doi:10.1016/j.anifeedsci.2021.114958 · Cited by 46 · see citing works
Chaiyapechara, S., Uengwetwanit, T., Arayamethakorn, S., Bunphimpapha, P., Phromson, M., Jangsutthivorawat, W., Tala, S., Karoonuthaisiri, N., & Rungrassamee, W. (2021) · Aquaculture · doi:10.1016/j.aquaculture.2021.737371 · Cited by 43 · see citing works
Duan, Y., Wang, Y., Liu, Q., Xiong, D., & Zhang, J. (2019) · Fish & Shellfish Immunology · doi:10.1016/j.fsi.2019.02.021 · Cited by 43 · see citing works
Identifying Potential Polymicrobial Pathogens: Moving Beyond Differential Abundance to Driver Taxa
Lü, J., Zhang, X., Qiu, Q., Chen, J., & Xiong, J. (2020) · Microbial Ecology · doi:10.1007/s00248-020-01511-y · Cited by 43 · see citing works
Wang, P., Chen, S., Wei, C.-Y., Yan, Q., Sun, Y., Yi, G., Li, D., & Fu, W. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735947 · Cited by 44 · see citing works
Garibay-Valdéz, E., Martínez‐Porchas, M., Calderón, K., Vargas‐Albores, F., Gollas‐Galván, T., & Martínez‐Córdova, L. R. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.734842 · Cited by 42 · see citing works
Hossain, M. S., Dai, J., & Qiu, D. (2021) · Aquaculture Research · doi:10.1111/are.15178 · Cited by 41 · see citing works
Omont, A., Elizondo‐González, R., Quiróz-Guzmán, E., Escobedo‐Fregoso, C., Hernández-Herrera, R., & Peña‐Rodríguez, A. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735059 · Cited by 41 · see citing works
Raza, B., Zheng, Z., Zhu, J., & Yang, W. T. (2024) · Microorganisms · doi:10.3390/microorganisms12051013 · Cited by 40 · see citing works
de Lima, P. C. M., Silva, A. D. N. E., Silva, D. A., da Silva, S. M. B. C., Brito, L. O., & Gálvez, A. O. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735913 · Cited by 40 · see citing works
Roura, Á., Doyle, S. R., Nande, M., & Strugnell, J. M. (2017) · Frontiers in Physiology · doi:10.3389/fphys.2017.00362 · Cited by 36 · see citing works
McLean, E., Barrows, F. T., Craig, S. R., Alfrey, K. B., & Tran, L. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735383 · Cited by 34 · see citing works
Valente, C. D. S., Rodiles, A., Marques, M. R. F., & Merrifield, D. L. (2020) · Applied Microbiology and Biotechnology · doi:10.1007/s00253-020-10816-4 · Cited by 34 · see citing works
Tang, Y., Wang, R., Tan, L., Guo, L., Duan, Y., Yang, L., Jiang, S., Zhou, F., Jiang, S., & Huang, J. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735344 · Cited by 33 · see citing works
Shrimp microbiome and immune development in the early life stages
Angthong, P., Chaiyapechara, S., & Rungrassamee, W. (2023) · Developmental & Comparative Immunology · doi:10.1016/j.dci.2023.104765 · Cited by 33 · see citing works
Wang, H., Huang, J., Wang, P., & Li, T. (2020) · Molecular Genetics and Genomics · doi:10.1007/s00438-020-01717-2 · Cited by 32 · see citing works
Krasaesueb, N., Boonnorat, J., Maneeruttanarungroj, C., & Khetkorn, W. (2022) · Journal of Environmental Management · doi:10.1016/j.jenvman.2022.116452 · Cited by 32 · see citing works
Wang, X., Luo, H., Wang, D., Zheng, Y., Zhu, W., Zhang, W., Chen, Z., Chen, X., & Shao, J. (2023) · Aquaculture Nutrition · doi:10.1155/2023/3706709 · Cited by 32 · see citing works
Guzmán-Villanueva, L. T., Escobedo‐Fregoso, C., Barajas-Sandoval, D. R., Gómez‐Gil, B., Peña‐Rodríguez, A., Martínez‐Díaz, S. F., Balcázar, J. L., & Quiróz-Guzmán, E. (2019) · Aquaculture · doi:10.1016/j.aquaculture.2019.734907 · Cited by 32 · see citing works
Xue, M., Wu, L., He, Y., Liang, H., & Wen, C. (2018) · PeerJ · doi:10.7717/peerj.5257 · Cited by 31 · see citing works
Ramadhani, D. E., Widanarni, W., & Sukenda, S. (2019) · Jurnal Akuakultur Indonesia · doi:10.19027/jai.18.2.130-140 · Cited by 31 · see citing works
Epimicrobiome Shifts With Bleaching Disease Progression in the Brown Seaweed Saccharina japonica
Fan, L., Egan, S., Zhuang, Y., Chang, L., Xiao, L., Qin, Y., & Wang, G. (2022) · Frontiers in Marine Science · doi:10.3389/fmars.2022.865224 · Cited by 30 · see citing works
Shrimp Intestinal Microbiota Homeostasis: Dynamic Interplay Between the Microbiota and Host Immunity
Zhou, K., Liu, P., Yao, J., Vasta, G. R., Wang, J., & Wang, X. (2024) · Reviews in Aquaculture · doi:10.1111/raq.12986 · Cited by 30 · see citing works
Song, M., Pan, L., Zhang, M., Huang, F., Gao, S., & Tian, C. (2020) · Aquaculture International · doi:10.1007/s10499-020-00562-9 · Cited by 30 · see citing works
Core microbiome involved in nitrite removal in shrimp culture ponds
Hu, D., Wang, L., Zhao, R., Zeng, J., & Shao, Z. (2021) · Aquaculture Research · doi:10.1111/are.15698 · Cited by 28 · see citing works
Self-citationGiraud, C., Callac, N., Boulo, V., Lam, J.-S., Pham, D., Selmaoui-Folcher, N., & Wabete, N. (2022) · Frontiers in Microbiology · doi:10.3389/fmicb.2022.886752 · Cited by 26 · see citing works
Cao, Q., Najnine, F., Han, H., Wu, B., & Cai, J. (2020) · Frontiers in Microbiology · doi:10.3389/fmicb.2020.01296 · Cited by 27 · see citing works
Menanteau‐Ledouble, S., Skov, J., Lukassen, M. B., Rolle-Kampczyk, U. E., Haange, S., Dalsgaard, I., von Bergen�, M., & Nielsen, J. L. (2022) · Animal Microbiome · doi:10.1186/s42523-022-00209-5 · Cited by 26 · see citing works
Landsman, A., St‐Pierre, B., Rosales-Leija, M., Brown, M. L., & Gibbons, W. R. (2019) · Microorganisms · doi:10.3390/microorganisms7080217 · Cited by 26 · see citing works
Su, S., Jing, X., Zhang, C., Hou, Y., Li, Z., Yang, X., Zhou, X., Xu, P., Tang, Y., & Zhu, J. X. (2021) · Frontiers in Microbiology · doi:10.3389/fmicb.2021.659602 · Cited by 26 · see citing works
Gao, Q., Luo, J., Liu, P., Yi, S., Tang, Q., Jing-fen, L., Xia, Z., & Yang, G. (2022) · Aquaculture · doi:10.1016/j.aquaculture.2022.738200 · Cited by 25 · see citing works
Xue, M., Liang, H., He, Y., & Wen, C. (2015) · Chinese Journal of Oceanology and Limnology · doi:10.1007/s00343-016-5024-2 · Cited by 25 · see citing works
Foysal, M. J., Fotedar, R. K., Tay, C. Y., & Gupta, S. K. (2020) · Chemosphere · doi:10.1016/j.chemosphere.2020.125821 · Cited by 24 · see citing works
Munaeni, W., Widanarni, W., Yuhana, M., Setiawati, M., & Wahyudi, A. T. (2020) · Aquaculture · doi:10.1016/j.aquaculture.2020.735466 · Cited by 23 · see citing works
Garibay-Valdéz, E., Martínez‐Córdova, L. R., López‐Torres, M. A., Almendáriz-Tapia, F. J., Martínez‐Porchas, M., & Calderón, K. (2020) · Scientific Reports · doi:10.1038/s41598-020-68222-9 · Cited by 23 · see citing works
Absence of a microbiome in the midgut trunk of six representative Crustacea
Martin, G. G., Natha, Z., Henderson, N., Bang, S., Hendry, H., & Loera, Y. (2019) · Journal of Crustacean Biology · doi:10.1093/jcbiol/ruz087 · Cited by 23 · see citing works
Yuan, Y., Jin, M., Luo, J., Xiong, J., Ward, T. L., Ji, F., Xu, G., Sun, M., & Zhou, Q. (2019) · Aquaculture Nutrition · doi:10.1111/anu.12901 · Cited by 22 · see citing works
- Authors
- Huang, Z., Li, X., Wang, L., & Shao, Z.
- Affiliations
- Third Institute of Oceanography (CN)
- Ningbo University (CN)
- Corresponding author
- Shao, Zongze
- Venue
- Aquaculture Research
- Publisher
- Wiley
- Published
- 2014-10-28
- Volume
- 47
- Issue
- 6
- Pages
- 1737-1746
- ISSN
- 1355-557X (ISSN-L)
- OpenAlex
- W2116827175
- Cited by
- 205
- References
- 35
- Citations by year
- 2026: 7 · 2025: 15 · 2024: 22 · 2023: 21 · 2022: 21 · 2021: 20 · 2020: 37 · 2019: 25 · 2018: 19 · 2017: 13 · 2016: 1 · 2015: 4
- FWCI
- 2.74
- Type
- journal article
- Language
- en
- Open access
- closed
- Locations
- Aquaculture Research (publishedVersion)
- Funders
- Public Welfare Project of SOA, China (201005032)
- Topics
- Life Sciences › Immunology and Microbiology › Immunology › Aquaculture disease management and microbiota
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Keywords
- Litopenaeus vannamei, white shrimp, intestinal bacterial community, gut microbiota, postlarvae, juveniles, Proteobacteria, Bacteroidetes, actinobacteria, Flavobacteriaceae, Vibrionaceae, Microbacteriaceae, Mycoplasmataceae, Artemia nauplii, bacterial community dynamics
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review