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hp‐rare 1.0: a computer program for performing rarefaction on measures of allelic richness
Abstract
The number of alleles in a sample (allelic richness) is a fundamental measure of genetic diversity. However, this diversity measure has been difficult to use because large samples are expected to contain more alleles than small samples. The statistical technique of rarefaction compensates for this sampling disparity. Here I introduce a computer program that performs rarefaction on private alleles and hierarchical sampling designs.
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Cited by
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Rubidge, E. M., Patton, J. L., Lim, M., Burton, A. C., Brashares, J. S., & Moritz, C. (2012) · Nature Climate Change · doi:10.1038/nclimate1415 · Cited by 169
Statham, M. J., Murdoch, J., Janecka, J., Aubry, K. B., Edwards, C. J., Soulsbury, C. D., Berry, O., Wang, Z., Harrison, D., Pearch, M., et al. (2014) · Molecular Ecology · doi:10.1111/mec.12898 · Cited by 117
Gomes, B., Sousa, C. A., Vicente, J. L., Pinho, L., Calderón, I., Arez, E., Almeida, A. P., Donnelly, M. J., & Pinto, J. (2013) · Parasites & Vectors · doi:10.1186/1756-3305-6-93 · Cited by 103
Bouchemousse, S., Bishop, J. D. D., & Viard, F. (2016) · Scientific Reports · doi:10.1038/srep24875 · Cited by 85
Sacks, B. N., Statham, M. J., Perrine, J. D., Wisely, S. M., & Aubry, K. B. (2010) · Conservation Genetics · doi:10.1007/s10592-010-0053-4 · Cited by 64
Metadata
- Authors
- KALINOWSKI, S. T.
- Venue
- Molecular Ecology Notes
- Publisher
- Wiley
- Published
- 2004-12-13
- Volume
- 5
- Issue
- 1
- Pages
- 187-189
- ISSN
- 1471-8278 (ISSN-L)
- 1471-8286
- OpenAlex
- W2150884512
- Cited by
- 2,197
- References
- 0
- FWCI
- 8.42
- Type
- journal article
- Language
- en
- Open access
- closed
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- CoChat. (2026). Citation check: hp‐rare 1.0: a computer program for performing rarefaction on measures of allelic richness. https://app.cochat.ai/papers/10.1111/j.1471-8286.2004.00845.x
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- KALINOWSKI, S. T. (2005). hp‐rare 1.0: a computer program for performing rarefaction on measures of allelic richness. Molecular Ecology Notes. https://doi.org/10.1111/j.1471-8286.2004.00845.x
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Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
