Cited by 1,680Protist diversity and phylogenyGenomics and Phylogenetic StudiesPlant Diversity and Evolution

The DOI matches its Crossref record; 212 of the 212 references it cites were found in a registry or an index.

The Revised Classification of Eukaryotes

Open access

Adl, Sina M., Simpson, Alastair G. B., Lane, Christopher E., Lukeš, Julius, Bass, David, Bowser, Samuel S., Brown, Matthew W., Burki, Fabien, Dunthorn, Micah, Hampl, Vladimir, Heiss, Aaron, Hoppenrath, Mona, Lara, Enrique, le Gall, Line, Lynn, Denis H., McManus, Hilary, Mitchell, Edward A. D., Mozley‐Stanridge, Sharon E., Parfrey, Laura W., Pawlowski, Jan, Rueckert, Sonja, Shadwick, Laura, Schoch, Conrad L., Smirnov, Alexey, Spiegel, Frederick W.·2012·Journal of Eukaryotic Microbiology

DOI 10.1111/j.1550-7408.2012.00644.xPMC PMC3483872

Open this paper in CoChat — free account Open PDF

Abstract

This revision of the classification of eukaryotes, which updates that of Adl et al. [ J. Eukaryot. Microbiol . 52 (2005) 399], retains an emphasis on the protists and incorporates changes since 2005 that have resolved nodes and branches in phylogenetic trees. Whereas the previous revision was successful in re‐introducing name stability to the classification, this revision provides a classification for lineages that were then still unresolved. The supergroups have withstood phylogenetic hypothesis testing with some modifications, but despite some progress, problematic nodes at the base of the eukaryotic tree still remain to be statistically resolved. Looking forward, subsequent transformations to our understanding of the diversity of life will be from the discovery of novel lineages in previously under‐sampled areas and from environmental genomic information.

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Integrity signals

Registry

Crossref · 10.1111/j.1550-7408.2012.00644.x

Cites

212 of 212 references verified0 citation errors · 0 not checkable

Statistics

Claims the paper makes

The claims and statistics of this paper haven’t been checked yet.

Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.

Claims other papers make about this one

Each is checked against this paper’s own text: does it say what the citing paper says it does?

Self-check

Percentages, sums and reported differences re-computed from the paper’s own numbers.

The self-check needs the paper’s full text.

How Many Species Are There on Earth and in the Ocean?
Mora, C., Tittensor, D. P., Adl, S., Simpson, A. G. B., & Worm, B. (2011) · PLoS Biology · doi:10.1371/journal.pbio.1001127 · Cited by 3,045 · cited 21×
“Estimates of protist diversity for each lineage suggest that a huge number remain to be discovered (Adl et al., 2007) and this notion is supported by a separate estimation based on a statistical predictive model (Mora et al. 2011).”
BackgroundInfluentialSelf-citation
Foraminiferal Genera and Their Classification
Loeblich, A. R., & Tappan, H. (1988) · Springer eBooks · doi:10.1007/978-1-4899-5760-3 · Cited by 2,984
A higher-level phylogenetic classification of the Fungi
Hibbett, D. S., Binder, M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O. E., Huhndorf, S. M., James, T. Y., Kirk, P. M., Lücking, R., et al. (2007) · Mycological Research · doi:10.1016/j.mycres.2007.03.004 · Cited by 2,388
Self-citation
The New Higher Level Classification of Eukaryotes with Emphasis on the Taxonomy of Protists
Adl, S., Simpson, A., Farmer, M. A., Andersen, R., Anderson, O., Barta, J. R., Bowser, S., Brugerolle, G., Fensome, R., Fredericq, S., et al. (2005) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2005.00053.x · Cited by 1,749
Self-citation
The Ciliated Protozoa: Characterization, Classification, and Guide to the Literature
Lynn, D. H. (2008) · DIAL (Catholic University of Leuven) · doi:10.1007/978-1-4020-8239-9 · Cited by 1,337
Self-citation
Illustrated Guide to the Protozoa
Fayer, R. (1986) · American Journal of Tropical Medicine and Hygiene · doi:10.4269/ajtmh.1986.35.215 · Cited by 1,032
The phagotrophic origin of eukaryotes and phylogenetic classification of Protozoa.
Cavalier‐Smith, T. (2002) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/00207713-52-2-297 · Cited by 1,013
Increased Taxon Sampling Greatly Reduces Phylogenetic Error
Zwickl, D. J., & Hillis, D. M. (2002) · Systematic Biology · doi:10.1080/10635150290102339 · Cited by 939
Assembling the fungal tree of life: progress, classification, and evolution of subcellular traits
Lutzoni, F. M., Kauff, F., Cox, C. J., McLaughlin, D. J., Celio, G. J., Dentinger, B. T. M., Padamsee, M., Hibbett, D. S., James, T. Y., Baloch, E., et al. (2004) · American Journal of Botany · doi:10.3732/ajb.91.10.1446 · Cited by 816
Self-citation
Phylogeny of some of the major genera of dinoflagellates based on ultrastructure and partial LSU rDNA sequence data, including the erection of three new genera of unarmoured dinoflagellates
Daugbjerg, N., Hansen, G. H., Larsen, J., & Moestrup, Ø. (2000) · Phycologia · doi:10.2216/i0031-8884-39-4-302.1 · Cited by 673
Taxon sampling and the accuracy of phylogenetic analyses
(2008) · Journal of Systematics and Evolution · doi:10.3724/sp.j.1002.2008.08016 · Cited by 553
Missing data and the design of phylogenetic analyses
Wiens, J. J. (2005) · Journal of Biomedical Informatics · doi:10.1016/j.jbi.2005.04.001 · Cited by 491
Phylogenomic analyses support the monophyly of Excavata and resolve relationships among eukaryotic “supergroups”
Hampl, V., Hug, L. A., Leigh, J., Dacks, J. B., Lang, B. F., Simpson, A. G. B., & Roger, A. J. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0807880106 · Cited by 488
Self-citation
A photosynthetic alveolate closely related to apicomplexan parasites
Moore, R. B., Oborník, M., Janouškovec, J., Chrudimský, T., Vancová, M., Green, D. H., Wright, S. W., Davies, N. W., Bolch, C. J. S., Heimann, K., et al. (2008) · Nature · doi:10.1038/nature06635 · Cited by 476
A molecular phylogeny of the flagellated fungi (Chytridiomycota) and description of a new phylum (Blastocladiomycota)
James, T. Y., Letcher, P. M., Longcore, J. E., Mozley-Standridge, S. E., Porter, D. D., Powell, M. J., Griffith, G. W., & Vilgalys, R. J. (2006) · Mycologia · doi:10.3852/mycologia.98.6.860 · Cited by 461
Myosin domain evolution and the primary divergence of eukaryotes
Richards, T. A., & Cavalier‐Smith, T. (2005) · Nature · doi:10.1038/nature03949 · Cited by 432
An overview of the systematics of the Sordariomycetes based on a four-gene phylogeny
Zhang, N., Castlebury, L. A., Miller, A. N., Huhndorf, S. M., Schoch, C. L., Seifert, K. A., Rossman, A. Y., Rogers, J. D., Kohlmeyer, J., Volkmann‐Kohlmeyer, B., et al. (2006) · Mycologia · doi:10.3852/mycologia.98.6.1076 · Cited by 431
Self-citation
Discovery of novel intermediate forms redefines the fungal tree of life
Jones, M. D. M., Forn, I., Gadelha, C., Egan, M. J., Bass, D., Massana, R., & Richards, T. A. (2011) · Nature · doi:10.1038/nature09984 · Cited by 428
Self-citation
Phylogenomics Reshuffles the Eukaryotic Supergroups
Burki, F., Shalchian‐Tabrizi, K., Minge, M. A., Skjæveland, Å., Nikolaev, S. I., Jakobsen, K. S., & Pawlowski, J. W. (2007) · PLoS ONE · doi:10.1371/journal.pone.0000790 · Cited by 425
Self-citation
Die natürlichen Pflanzenfamilien
Bertram (1888) · Archiv der Pharmazie · doi:10.1002/ardp.18882260712 · Cited by 363
On dinoflagellate evolution
Taylor, F. J. R. (1980) · Biosystems · doi:10.1016/0303-2647(80)90006-4 · Cited by 353
A NEW LOOK AT AN ANCIENT ORDER: GENERIC REVISION OF THE BANGIALES (RHODOPHYTA)1
Sutherland, J. E., Lindstrom, S. C., Nelson, W. A., Brodie, J. A., Lynch, M. D. J., Hwang, M. S., Choi, H., Miyata, M., Kikuchi, N., Oliveira, M. C., et al. (2011) · Journal of Phycology · doi:10.1111/j.1529-8817.2011.01052.x · Cited by 348
The evolution and diversity of kinetoplastid flagellates
Simpson, A. G. B., Stevens, J. R., & Lukeš, J. (2006) · Trends in Parasitology · doi:10.1016/j.pt.2006.02.006 · Cited by 343
Self-citation
Genome size differentiates co-occurring populations of the planktonic diatom Ditylum brightwellii(Bacillariophyta)
Koester, J. A., Swalwell, J. E., von Dassow, P., & Armbrust, E. V. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-1 · Cited by 340
A multi-locus time-calibrated phylogeny of the brown algae (Heterokonta, Ochrophyta, Phaeophyceae): Investigating the evolutionary nature of the “brown algal crown radiation”
Silberfeld, T., Leigh, J., Verbruggen, H., Cruaud, C., de Reviers, B., & Rousseau, F. (2010) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2010.04.020 · Cited by 335
The Closest Unicellular Relatives of Animals
Lang, B. F., O'Kelly, C., Nerad, T., Gray, M. W., & Burger, G. (2002) · Current Biology · doi:10.1016/s0960-9822(02)01187-9 · Cited by 326
Phylogeny and Classification of Phylum Cercozoa (Protozoa)
Cavalier‐Smith, T., & Chao, E. E. Y. (2003) · Protist · doi:10.1078/143446103322454112 · Cited by 316
Myconet Volume 14. Part One. Outline of Ascomycota—2009. Part Two. Notes on Ascomycete Systematics. Nos. 4751–5113
Lumbsch, H. T., & Huhndorf, S. M. (2010) · Fieldiana Life and Earth Sciences · doi:10.3158/1557.1 · Cited by 313
The Protistan Origins of Animals and Fungi
Steenkamp, E. T., Wright, J., & Baldauf, S. L. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msj011 · Cited by 311
Diversity, Nomenclature, and Taxonomy of Protists
Adl, S. M., Leander, B. S., Simpson, A. G. B., Archibald, J. M., Anderson, O. R., Bass, D., Bowser, S. S., Brugerolle, G., Farmer, M. A., Karpov, S. A., et al. (2007) · Systematic Biology · doi:10.1080/10635150701494127 · Cited by 309
Self-citation
DEFINING THE MAJOR LINEAGES OF RED ALGAE (RHODOPHYTA)1
Yoon, H. S., Müller, K. M., Sheath, R. G., Ott, F. D., & Bhattacharya, D. (2006) · Journal of Phycology · doi:10.1111/j.1529-8817.2006.00210.x · Cited by 305
Archaeorhizomycetes: Unearthing an Ancient Class of Ubiquitous Soil Fungi
Rosling, A., Cox, F., Cruz-Martínez, K., Ihrmark, K., Grelet, G., Lindahl, B. D., Menkis, A., & James, T. Y. (2011) · Science · doi:10.1126/science.1206958 · Cited by 304
Resolution of Phylogenetic Conflict in Large Data Sets by Increased Taxon Sampling
Hedtke, S. M., Townsend, T. M., & Hillis, D. M. (2006) · Systematic Biology · doi:10.1080/10635150600697358 · Cited by 303
Molecular Phylogeny and Evolution of Morphology in the Social Amoebas
Schaap, P., Winckler, T., Nelson, M., Alvarez‐Curto, E., Elgie, B., Hagiwara, H., Cavender, J. C., Milano-Curto, A., Rozen, D. E., Dingermann, T., et al. (2006) · Science · doi:10.1126/science.1130670 · Cited by 276
Multigene Phylogeny of Choanozoa and the Origin of Animals
Shalchian‐Tabrizi, K., Minge, M. A., Espelund, M., Orr, R. J. S., Ruden, T. A., Jakobsen, K. S., & Cavalier‐Smith, T. (2008) · PLoS ONE · doi:10.1371/journal.pone.0002098 · Cited by 269
Phylogenomics reveals a new ‘megagroup’ including most photosynthetic eukaryotes
Burki, F., Shalchian‐Tabrizi, K., & Pawlowski, J. W. (2008) · Biology Letters · doi:10.1098/rsbl.2008.0224 · Cited by 268
Self-citation
A Revised Classification of Naked Lobose Amoebae (Amoebozoa: Lobosa)
Смирнов, А. В., Chao, E. E. Y., Nassonova, E., et al. (2011) · Protist · doi:10.1016/j.protis.2011.04.004 · Cited by 261
New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes
Miądlikowska, J., Kauff, F., Hofstetter, V., et al. (2006) · Mycologia · doi:10.3852/mycologia.98.6.1088 · Cited by 261
Ancient origin of the integrin-mediated adhesion and signaling machinery
Sebé-Pedrós, A., Roger, A. J., Lang, B. F., King, N., & Ruiz‐Trillo, I. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002257107 · Cited by 256
Phylogenomic Evidence for Separate Acquisition of Plastids in Cryptophytes, Haptophytes, and Stramenopiles
Baurain, D., Brinkmann, H., Petersen, J., Rodríguez‐Ezpeleta, N., Stechmann, A., Demoulin, V., Roger, A. J., Burger, G., Lang, B. F., & Philippe, H. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq059 · Cited by 254
The evolutionary history of haptophytes and cryptophytes: phylogenomic evidence for separate origins
Burki, F., Okamoto, N., Pombert, J.-F., & Keeling, P. J. (2012) · Proceedings of the Royal Society B: Biological Sciences · doi:10.1098/rspb.2011.2301 · Cited by 240
Self-citation
Broadly Sampled Multigene Analyses Yield a Well-Resolved Eukaryotic Tree of Life
Parfrey, L. W., Grant, J. R., Tekle, Y. I., Lasek‐Nesselquist, E., Morrison, H. G., Sogin, M. L., Patterson, D. J., & Katz, L. A. (2010) · Systematic Biology · doi:10.1093/sysbio/syq037 · Cited by 232
Self-citation
Phylum-specific environmental DNA analysis reveals remarkably high global biodiversity of Cercozoa (Protozoa)
Bass, D., & Cavalier‐Smith, T. (2004) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63229-0 · Cited by 230
Self-citation
The Flagellates: Unity, Diversity and Evolution
Sidall, M. E., Leadbeater, B. S. C., & Green, J. C. (2001) · Journal of Parasitology · doi:10.2307/3285296 · Cited by 226
Evolution of the Apicomplexa: where are we now?
Morrison, D. A. (2009) · Trends in Parasitology · doi:10.1016/j.pt.2009.05.010 · Cited by 217
Picobiliphytes: A Marine Picoplanktonic Algal Group with Unknown Affinities to Other Eukaryotes
Not, F., Valentin, K.-U., Romari, K., Connie Lovejoy, C., Massana, R., Töbe, K., Vaulot, D., & Medlin, L. K. (2007) · Science · doi:10.1126/science.1136264 · Cited by 206
Molecular phylogeny of choanoflagellates, the sister group to Metazoa
Carr, M., Leadbeater, B. S. C., Hassan, R., Nelson, M., & Baldauf, S. L. (2008) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0801667105 · Cited by 205
Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae
Geiser, D. M., Gueidan, C., Miądlikowska, J., et al. (2006) · Mycologia · doi:10.3852/mycologia.98.6.1053 · Cited by 199
An outline for the reclassification of the Chytridiales, and for a new order, the Spizellomycetales
Barr, D. J. S. (1980) · Canadian Journal of Botany · doi:10.1139/b80-276 · Cited by 191
The simple-septate basidiomycetes: a synopsis
Bauer, R., Begerow, D., Sampaio, J. P., et al. (2006) · Mycological Progress · doi:10.1007/s11557-006-0502-0 · Cited by 189
Toward Resolving the Eukaryotic Tree: The Phylogenetic Positions of Jakobids and Cercozoans
Rodríguez‐Ezpeleta, N., Brinkmann, H., Burger, G., Roger, A. J., Gray, M. W., Philippe, H., & Lang, B. F. (2007) · Current Biology · doi:10.1016/j.cub.2007.07.036 · Cited by 185
ON THE IDENTITY OFKARLODINIUM VENEFICUMAND DESCRIPTION OFKARLODINIUM ARMIGERSP. NOV. (DINOPHYCEAE), BASED ON LIGHT AND ELECTRON MICROSCOPY, NUCLEAR‐ENCODED LSU RDNA, AND PIGMENT COMPOSITION1
Bergholtz, T., Daugbjerg, N., Moestrup, Ø., & Fernández‐Tejedor, M. (2006) · Journal of Phycology · doi:10.1111/j.1529-8817.2006.00172.x · Cited by 185
Evolution of Rhizaria: new insights from phylogenomic analysis of uncultivated protists
Burki, F., Kudryavtsev, A. A., Matz, M. V., Aglyamova, G. V., Bulman, S. R., Fiers, M. W. E. J., Keeling, P. J., & Pawlowski, J. W. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-377 · Cited by 184
Self-citation
The Environmental Clade LKM11 and Rozella Form the Deepest Branching Clade of Fungi
Lara, E., Moreira, D., & López‐García, P. (2009) · Protist · doi:10.1016/j.protis.2009.06.005 · Cited by 183
Self-citation
Comprehensive Multigene Phylogenies of Excavate Protists Reveal the Evolutionary Positions of “Primitive” Eukaryotes
Simpson, A. G. B., Inagaki, Y., & Roger, A. J. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msj068 · Cited by 182
Self-citation
On the monophyly of chromalveolates using a six-protein phylogeny of eukaryotes
Harper, J., Waanders, E., & Keeling, P. J. (2005) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63216-0 · Cited by 179
A phylogenetic overview of the Agaricomycotina
Hibbett, D. S. (2006) · Mycologia · doi:10.3852/mycologia.98.6.917 · Cited by 176
Phylogeny of Novel Naked Filose and Reticulose Cercozoa: Granofilosea cl. n. and Proteomyxidea Revised
Bass, D., Chao, E. E. Y., Nikolaev, S. I., Yabuki, A., Ishida, K., Berney, C., Pakzad, U., Wylezich, C., & Cavalier‐Smith, T. (2008) · Protist · doi:10.1016/j.protis.2008.07.002 · Cited by 175
Self-citation
New insights into classification and evolution of the Lecanoromycetes (Pezizomycotina, Ascomycota) from phylogenetic analyses of three ribosomal RNA- and two protein-coding genes
Miądlikowska, J., Kauff, F., Hofstetter, V., et al. (2006) · Mycologia · doi:10.1080/15572536.2006.11832636 · Cited by 175
A nuclear phylogeny of the Florideophyceae (Rhodophyta) inferred from combined EF2, small subunit and large subunit ribosomal DNA: Establishing the new red algal subclass Corallinophycidae
Gall, L. L., & Saunders, G. W. (2006) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2006.11.012 · Cited by 174
An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences
Aime, M. C., Matheny, P. B., Henk, D. A., et al. (2006) · Mycologia · doi:10.3852/mycologia.98.6.896 · Cited by 174
Phylogenetic Relationships within the Opisthokonta Based on Phylogenomic Analyses of Conserved Single-Copy Protein Domains
Torruella, G., Derelle, R., Paps, J., Lang, B. F., Roger, A. J., Shalchian-Tabrizi, K., & Ruiz-Trillo, I. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/msr185 · Cited by 169
Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders
Hosaka, K., Bates, S. T., Beever, R. E., et al. (2006) · Mycologia · doi:10.3852/mycologia.98.6.949 · Cited by 169
What is Cryptosporidium? Reappraising its biology and phylogenetic affinities
Barta, J. R., & Thompson, R. C. A. (2006) · Trends in Parasitology · doi:10.1016/j.pt.2006.08.001 · Cited by 163
Ultrastructural and molecular phylogenetic delineation of a new order, the Rhizophydiales (Chytridiomycota)
Letcher, P. M., Powell, M. J., Churchill, P. F., et al. (2006) · Mycological Research · doi:10.1016/j.mycres.2006.06.011 · Cited by 162
Large-Scale Phylogenomic Analyses Reveal That Two Enigmatic Protist Lineages, Telonemia and Centroheliozoa, Are Related to Photosynthetic Chromalveolates
Burki, F., Inagaki, Y., Bråte, J., Archibald, J. M., Keeling, P. J., Cavalier‐Smith, T., Sakaguchi, M., Hashimoto, T., Horák, A., Kumar, S., et al. (2009) · Genome Biology and Evolution · doi:10.1093/gbe/evp022 · Cited by 161
Self-citation
Untangling the Phylogeny of Amoeboid Protists1
Pawlowski, J. W., & Burki, F. (2009) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2008.00379.x · Cited by 160
Self-citation
Phylogenetic Validation of the Genera Angomonas and Strigomonas of Trypanosomatids Harboring Bacterial Endosymbionts with the Description of New Species of Trypanosomatids and of Proteobacterial Symbionts
Teixeira, M. M. G., Borghesan, T. C., Ferreira, R. C., Santos, M. A., Takata, C. S. A., Campaner, M., Nunes, V. L. B., Milder, R. V., de Souza, W., & Camargo, E. P. (2011) · Protist · doi:10.1016/j.protis.2011.01.001 · Cited by 160
Critical Taxonomic Revision of Parabasalids with Description of one New Genus and three New Species
Čepička, I., Hampl, V., & Kulda, J. (2010) · Protist · doi:10.1016/j.protis.2009.11.005 · Cited by 158
Self-citation
Morphology, Ultrastructure and Life Cycle of Vitrella brassicaformis n. sp., n. gen., a Novel Chromerid from the Great Barrier Reef
Obornı́k, M., Modrý, D., Lukeš, M., Černotíková‐Stříbrná, E., Cihlář, J., Tesařová, M., Kotabová, E., Vancová, M., Prášil, O., & Lukeš, J. (2011) · Protist · doi:10.1016/j.protis.2011.09.001 · Cited by 157
Self-citation
Molecular Evolutionary Analyses of Nuclear‐Encoded Small Subunit Ribosomal RNA Identify an Independent Rhizopod Lineage Containing the Euglyphina and the Chlorarachniophyta
Bhattacharya, D., HELMCHEN, T., & Melkonian, M. (1995) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.1995.tb01541.x · Cited by 156
A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data
Begerow, D., Stoll, M., & Bauer, R. (2006) · Mycologia · doi:10.3852/mycologia.98.6.906 · Cited by 156
Deep Phylogeny and Evolution of Slime Moulds (Mycetozoa)
Fiore‐Donno, A. M., Nikolaev, S. I., Nelson, M., et al. (2009) · Protist · doi:10.1016/j.protis.2009.05.002 · Cited by 151
Phylogeny of the "Forgotten" Cellular Slime Mold, Fonticula alba, Reveals a Key Evolutionary Branch within Opisthokonta
Brown, M. W., Spiegel, F. W., & Silberman, J. D. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp185 · Cited by 150
Self-citation
Marine gregarines: evolutionary prelude to the apicomplexan radiation?
Leander, B. S. (2008) · Trends in Parasitology · doi:10.1016/j.pt.2007.11.005 · Cited by 149
Phylogenomic analyses predict sistergroup relationship of nucleariids and Fungi and paraphyly of zygomycetes with significant support
Liu, Y., Steenkamp, E. T., Brinkmann, H., Forget, L., Philippe, H., & Lang, B. F. (2009) · BMC Evolutionary Biology · doi:10.1186/1471-2148-9-272 · Cited by 146
Supraordinal taxa of Ascomycota
Eriksson, O., & Winka, K. (1997) · Myconet · Cited by 144
Novel Cultured Protists Identify Deep-branching Environmental DNA Clades of Cercozoa: New Genera Tremula, Micrometopion, Minimassisteria, Nudifila, Peregrinia
Howe, A. T., Bass, D., Scoble, J. M., Lewis, R., Vickerman, K., Arndt, H., & Cavalier‐Smith, T. (2011) · Protist · doi:10.1016/j.protis.2010.10.002 · Cited by 139
Self-citation
Evolution: Revisiting the Root of the Eukaryote Tree
Roger, A. J., & Simpson, A. G. B. (2009) · Current Biology · doi:10.1016/j.cub.2008.12.032 · Cited by 139
Self-citation
Eurotiomycetes: Eurotiomycetidae and Chaetothyriomycetidae
Geiser, D. M., Gueidan, C., Miądlikowska, J., et al. (2006) · Mycologia · doi:10.1080/15572536.2006.11832633 · Cited by 131
A phylogenetic hypothesis of Ustilaginomycotina based on multiple gene analyses and morphological data
Begerow, D., Stoll, M., & Bauer, R. (2006) · Mycologia · doi:10.1080/15572536.2006.11832620 · Cited by 130
Data mining approach identifies research priorities and data requirements for resolving the red algal tree of life
Verbruggen, H., Maggs, C. A., Saunders, G. W., Gall, L. L., Yoon, H. S., & Clerck, O. D. (2010) · BMC Evolutionary Biology · doi:10.1186/1471-2148-10-16 · Cited by 129
Congruence between nuclear and mitochondrial genes in Demospongiae: A new hypothesis for relationships within the G4 clade (Porifera: Demospongiae)
Morrow, C. C., PICTON, B. E., Erpenbeck, D., Boury‐Esnault, N., Maggs, C. A., & Allcock, A. L. (2011) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2011.09.016 · Cited by 124
Hyaloraphidium curvatum: A Linear Mitochondrial Genome, tRNA Editing, and an Evolutionary Link to Lower Fungi
Forget, L., Ustinova, J., Wang, Z., Huss, V. A. R., & Lang, B. F. (2002) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a004084 · Cited by 122
COI Barcoding of Nebelid Testate Amoebae (Amoebozoa: Arcellinida): Extensive Cryptic Diversity and Redefinition of the Hyalospheniidae Schultze
Kosakyan, A., Heger, T. J., Leander, B. S., et al. (2011) · Protist · doi:10.1016/j.protis.2011.10.003 · Cited by 120
Molecular phylogenetics of the gomphoid-phalloid fungi with an establishment of the new subclass Phallomycetidae and two new orders
Hosaka, K., Bates, S. T., Beever, R. E., et al. (2006) · Mycologia · doi:10.1080/15572536.2006.11832624 · Cited by 119
Morphology and development of rumen fungi: Neocallimastix sp., Piromyces communis, and Orpinomyces bovis gen.nov., sp.nov.
Barr, D. J. S., Kudo, H., Jakober, K. D., et al. (1989) · Canadian Journal of Botany · doi:10.1139/b89-361 · Cited by 114
AMPHIDINIUM REVISITED. I. REDEFINITION OF AMPHIDINIUM (DINOPHYCEAE) BASED ON CLADISTIC AND MOLECULAR PHYLOGENETIC ANALYSES1
Jørgensen, M. F., Murray, S. A., & Daugbjerg, N. (2004) · Journal of Phycology · doi:10.1111/j.1529-8817.2004.03131.x · Cited by 113
Higher‐Order Phylogeny of Plasmodial Slime Molds (Myxogastria) Based on Elongation Factor 1‐A and Small Subunit rRNA Gene Sequences
FIORE‐DONNO, A., Berney, C., Pawlowski, J. W., et al. (2005) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2005.00032.x · Cited by 113
Self-citation
A phylogenetic overview of the Agaricomycotina
Hibbett, D. S. (2006) · Mycologia · doi:10.1080/15572536.2006.11832621 · Cited by 111
Phylogenetic Analyses of Small Subunit Ribosomal RNA Coding Regions Reveal a Monophyletic Lineage of Euglyphid Testate Amoebae (Order Euglyphida)
Wylezich, C., Meisterfeld, R., MEISTERFELD, S., & Schlegel, M. (2002) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2002.tb00352.x · Cited by 110
Nomenclatural Clarifications and New Taxa in the Glomeromycota Pacispora
Walker, C., & Schüßler, A. (2004) · Mycological Research · doi:10.1017/s0953756204231173 · Cited by 109
A Genome-Sequence Survey for Ascogregarina taiwanensis Supports Evolutionary Affiliation but Metabolic Diversity between a Gregarine and Cryptosporidium
Templeton, T. J., Enomoto, S., Chen, W., Huang, C.-G., Lancto, C. A., Abrahamsen, M. S., & Zhu, G. (2009) · Molecular Biology and Evolution · doi:10.1093/molbev/msp226 · Cited by 109
Phylogeny, Evolution, and Taxonomy of Vannellid Amoebae
Смирнов, А. В., Nassonova, E., Chao, E. E. Y., et al. (2007) · Protist · doi:10.1016/j.protis.2007.04.004 · Cited by 108
Lobulomycetales, a new order in the Chytridiomycota
Simmons, D. R., James, T. Y., Meyer, A. F., et al. (2008) · Mycological Research · doi:10.1016/j.mycres.2008.11.019 · Cited by 107
An overview of the higher level classification of Pucciniomycotina based on combined analyses of nuclear large and small subunit rDNA sequences
Aime, M. C., Matheny, P. B., Henk, D. A., et al. (2006) · Mycologia · doi:10.1080/15572536.2006.11832619 · Cited by 107
Phylogenetic placement of diverse amoebae inferred from multigene analyses and assessment of clade stability within ‘Amoebozoa’ upon removal of varying rate classes of SSU-rDNA
Tekle, Y. I., Grant, J. R., Anderson, O. R., et al. (2007) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2007.11.015 · Cited by 106
Phylogeny and Classification of Cercomonadida (Protozoa, Cercozoa): Cercomonas, Eocercomonas, Paracercomonas, and Cavernomonas gen. nov.
Bass, D., Howe, A. T., Mylnikov, A. P., et al. (2009) · Protist · doi:10.1016/j.protis.2009.01.004 · Cited by 103
Self-citation
Evolution of the apicoplast and its hosts: From heterotrophy to autotrophy and back again
Obornı́k, M., Janouškovec, J., Chrudimský, T., & Lukeš, J. (2008) · International Journal for Parasitology · doi:10.1016/j.ijpara.2008.07.010 · Cited by 100
Self-citation
Validation and justification of the phylum name Cryptomycota phyl. nov.
Jones, M. D. M., Richards, T. A., Hawksworth, D. L., et al. (2011) · IMA Fungus · doi:10.5598/imafungus.2011.02.02.08 · Cited by 99
Evolutionary Relationships of Apusomonads Inferred from Taxon-Rich Analyses of 6 Nuclear Encoded Genes
Kim, E., Simpson, A. G. B., & Graham, L. E. (2006) · Molecular Biology and Evolution · doi:10.1093/molbev/msl120 · Cited by 98
Self-citation
Ultrastructural and molecular analyses of Rhizophydiales (Chytridiomycota) isolates from North America and Argentina
Letcher, P. M., Vélez, C. G., Barrantes, M. E., et al. (2008) · Mycological Research · doi:10.1016/j.mycres.2008.01.025 · Cited by 98
Terminology and nomenclature of the cytoskeletal elements associated with the flagellar/ciliary apparatus in protists
Andersen, R. A., Barr, D. J. S., Lynn, D. H., et al. (1991) · PROTOPLASMA · doi:10.1007/bf01320809 · Cited by 97
Self-citation
Sergeia podlipaevi gen. nov., sp. nov. (Trypanosomatidae, Kinetoplastida), a parasite of biting midges (Ceratopogonidae, Diptera)
Svobodová, M., Žídková, L., Čepička, I., et al. (2007) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.64557-0 · Cited by 97
Studies on woloszynskioid dinoflagellates IV: The genus Biecheleria gen. nov.
Moestrup, Ø., Lindberg, K., & Daugbjerg, N. (2009) · Phycological Research · doi:10.1111/j.1440-1835.2009.00540.x · Cited by 97
Identification of a Divergent Environmental DNA Sequence Clade Using the Phylogeny of Gregarine Parasites (Apicomplexa) from Crustacean Hosts
Rueckert, S., Simdyanov, T. G., Aleoshin, V. V., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0018163 · Cited by 95
Self-citation
Ribosomal RNA Genes Challenge the Monophyly of the Hyalospheniidae (Amoebozoa: Arcellinida)
Lara, E., Heger, T. J., Ekelund, F., et al. (2007) · Protist · doi:10.1016/j.protis.2007.09.003 · Cited by 95
Self-citation
The Testate Lobose Amoebae (Order Arcellinida Kent, 1880) Finally Find their Home within Amoebozoa
Nikolaev, S. I. (2005) · Protist · doi:10.1016/j.protis.2005.03.002 · Cited by 94
Newly identified and diverse plastid-bearing branch on the eukaryotic tree of life
Kim, E., Harrison, J., Sudek, S., Jones, M. D. M., Wilcox, H. M., Richards, T. A., Worden, A. Z., & Archibald, J. M. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1013337108 · Cited by 93
Shedding Light on Vampires: The Phylogeny of Vampyrellid Amoebae Revisited
Hess, S., Sausen, N., & Melkonian, M. (2012) · PLoS ONE · doi:10.1371/journal.pone.0031165 · Cited by 92
Evolutionary position of breviate amoebae and the primary eukaryote divergence
Minge, M. A., Silberman, J. D., Orr, R. J. S., Cavalier‐Smith, T., Shalchian‐Tabrizi, K., Burki, F., Skjæveland, Å., & Jakobsen, K. S. (2008) · Proceedings of the Royal Society B Biological Sciences · doi:10.1098/rspb.2008.1358 · Cited by 91
Self-citation
Ceci n'est pas une pipe: names, clades and phylogenetic nomenclature
Pleijel, F., & Rouse, G. W. (2003) · Journal of Zoological Systematics & Evolutionary Research · doi:10.1046/j.1439-0469.2003.00236.x · Cited by 90
Collodictyon--An Ancient Lineage in the Tree of Eukaryotes
Zhao, S., Burki, F., Bråte, J., Keeling, P. J., Klaveness, D., & Shalchian‐Tabrizi, K. (2012) · Molecular Biology and Evolution · doi:10.1093/molbev/mss001 · Cited by 89
Self-citation
Phylogeny and Evolution of Apusomonadida (Protozoa: Apusozoa): New Genera and Species
Cavalier‐Smith, T., & Chao, E. E. Y. (2010) · Protist · doi:10.1016/j.protis.2010.04.002 · Cited by 89
Molecular phylogeny of the Dictyotales and their position within the Phaeophyceae, based on nuclear, plastid and mitochondrial DNA sequence data
Bittner, L., Payri, C. E., Couloux, A., Cruaud, C., de Reviers, B., & ROUSSEAU, F. (2008) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2008.06.018 · Cited by 89
Phylogenetic Relationships, Evolution, and Systematic Revision of the Septate Gregarines (Apicomplexa: Eugregarinorida: Septatorina)
Clopton, R. E. (2009) · Comparative Parasitology · doi:10.1654/4388.1 · Cited by 89
Rhizophlyctidales—a new order in Chytridiomycota
Letcher, P. M., Powell, M. J., Barr, D. J. S., et al. (2008) · Mycological Research · doi:10.1016/j.mycres.2008.03.007 · Cited by 88
Comprehensive Phylogenetic Reconstruction of Amoebozoa Based on Concatenated Analyses of SSU-rDNA and Actin Genes
Lahr, D. J. G., Grant, J. R., Nguyen, T., Lin, J., & Katz, L. A. (2011) · PLoS ONE · doi:10.1371/journal.pone.0022780 · Cited by 88
Phylogenomic Analysis of Kinetoplastids Supports That Trypanosomatids Arose from within Bodonids
Deschamps, P., Lara, E., Marande, W., López‐García, P., Ekelund, F., & Moreira, D. (2010) · Molecular Biology and Evolution · doi:10.1093/molbev/msq289 · Cited by 88
Self-citation
A synoptic review of the classification of red algal genera a half century after Kylin's “Die Gattungen der Rhodophyceen”
Schneider, C. W., & Wynne, M. J. (2007) · Botanica Marina · doi:10.1515/bot.2007.025 · Cited by 86
Terminology and nomenclature of the cytoskeletal elements associated with the flagellar/ciliary apparatus in protists
Andersen, R. A., Barr, D. J. S., Lynn, D. H., et al. (1991) · Springer eBooks · doi:10.1007/978-3-7091-6714-4_1 · Cited by 85
Self-citation
Are algal genes in nonphotosynthetic protists evidence of historical plastid endosymbioses?
Stiller, J., Huang, J.-L., Ding, Q., Tian, J., & Goodwillie, C. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-484 · Cited by 79
Ultrastructure and molecular phylogeny of Calkinsia aureus: cellular identity of a novel clade of deep-sea euglenozoans with epibiotic bacteria
Naoji Yubuki, A., Edgcomb, V. P., Bernhard, J. M., & Leander, B. S. (2009) · BMC Microbiology · doi:10.1186/1471-2180-9-16 · Cited by 78
Phylogeny of Marine Gregarines (Apicomplexa) — Pterospora, Lithocystis and Lankesteria — and the Origin(s) of Coelomic Parasitism
Leander, B. S., Lloyd, S. A. J., Marshall, W. L., & Landers, S. C. (2005) · Protist · doi:10.1016/j.protis.2005.10.002 · Cited by 77
Reconstructing Euglenoid Evolutionary Relationships using Three Genes: Nuclear SSU and LSU, and Chloroplast SSU rDNA Sequences and the Description of Euglenaria gen. nov. (Euglenophyta)
Linton, E. W., Karnkowska, A., Kim, J. I., et al. (2010) · Protist · doi:10.1016/j.protis.2010.02.002 · Cited by 76
Insights into the phylogeny of systematically controversial haptorian ciliates (Ciliophora, Litostomatea) based on multigene analyses
Zhang, Q.-Q., Simpson, A., & Song, W.-B. (2012) · Proceedings of the Royal Society of London. Biological Sciences · doi:10.1098/rspb.2011.2688 · Cited by 73
Self-citation
Studies on woloszynskioid dinoflagellates I:Woloszynskia coronatare-examined using light and electron microscopy and partial LSU rDNA sequences, with description ofTovelliagen. nov. andJadwigiagen. nov. (Tovelliaceae fam. nov.)
Lindberg, K., Moestrup, Ø., & Daugbjerg, N. (2005) · Phycologia · doi:10.2216/0031-8884(2005)44[416:sowdiw]2.0.co;2 · Cited by 72
Cladochytriales—a new order in Chytridiomycota
Mozley-Standridge, S. E., Letcher, P. M., Longcore, J. E., et al. (2009) · Mycological Research · doi:10.1016/j.mycres.2008.12.004 · Cited by 71
Phylogenetic Analysis of Coccidian Parasites from Invertebrates: Search for Missing Links
Kopečná, J., Jirků, M., Obornı́k, M., Tokarev, Y. S., Lukeš, J., & Modrý, D. (2006) · Protist · doi:10.1016/j.protis.2006.02.005 · Cited by 67
Self-citation
Palpitomonas bilix gen. et sp. nov.: A Novel Deep-branching Heterotroph Possibly Related to Archaeplastida or Hacrobia
Yabuki, A., Inagaki, Y., & Ishida, K. (2010) · Protist · doi:10.1016/j.protis.2010.03.001 · Cited by 66
Phylogenetic position of Multicilia marina and the evolution of Amoebozoa
Nikolaev, S. I., Berney, C., Petrov, N. B., et al. (2006) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.63763-0 · Cited by 66
Ultrastructural Description ofBreviata anathema, N. Gen., N. Sp., the Organism Previously Studied as “Mastigamoeba invertens”
Walker, G., Dacks, J. B., & Embley, T. M. (2006) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2005.00087.x · Cited by 65
SSU rRNA Phylogeny of Arcellinida (Amoebozoa) Reveals that the Largest Arcellinid Genus, Difflugia Leclerc 1815, is not Monophyletic
Gomaa, F., Todorov, M., Heger, T. J., Mitchell, E. A. D., & Lara, E. (2012) · Protist · doi:10.1016/j.protis.2011.12.001 · Cited by 65
Self-citation
Higher Level Taxonomy and Molecular Phylogenetics of the Choanoflagellatea
Nitsche, F., Carr, M., Arndt, H., & Leadbeater, B. S. C. (2011) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2011.00572.x · Cited by 64
RESOLVING EVOLUTIONARY RELATIONSHIPS AMONG THE BROWN ALGAE USING CHLOROPLAST AND NUCLEAR GENES1
Phillips, N. E., Burrowes, R., Rousseau, F., et al. (2008) · Journal of Phycology · doi:10.1111/j.1529-8817.2008.00473.x · Cited by 63
A wide diversity of previously undetected free‐living relatives of diplomonads isolated from marine/saline habitats
Kolísko, M., Silberman, J. D., Čepička, I., Naoji Yubuki, A., Takishita, K., Yabuki, A., Leander, B. S., Inouye, I., Inagaki, Y., Roger, A. J., et al. (2010) · Environmental Microbiology · doi:10.1111/j.1462-2920.2010.02239.x · Cited by 62
Self-citation
Species Boundaries in Gregarine Apicomplexan Parasites: A Case Study—Comparison of Morphometric and Molecular Variability in Lecudina cf. tuzetae (Eugregarinorida, Lecudinidae)
Rueckert, S., VILLETTE, P. M. A. H., & Leander, B. S. (2011) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2011.00553.x · Cited by 60
Self-citation
Small Subunit rRNA Phylogenies Show that the Class Nassophorea is Not Monophyletic (Phylum Ciliophora)
Gong, J., Stoeck, T., Yi, Z., et al. (2009) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2009.00413.x · Cited by 59
The structure of the flagellar apparatus of the swarm cells ofPhysarum polycephalum
Wright, M., Moisand, A., & Mir, L. M. (1979) · PROTOPLASMA · doi:10.1007/bf01279314 · Cited by 59
Molecular phylogeny of euglyphid testate amoebae (Cercozoa: Euglyphida) suggests transitions between marine supralittoral and freshwater/terrestrial environments are infrequent
Heger, T. J., Mitchell, E. A. D., Todorov, M., Golemansky, V., Lara, E., Leander, B. S., & Pawlowski, J. W. (2009) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2009.11.023 · Cited by 59
Self-citation
Mortierellomycotina subphyl. nov., based on multi-gene genealogies
Hoffmann, K., Voigt, K., & Kirk, P. M. (2011) · Mycotaxon · doi:10.5248/115.353 · Cited by 59
Ultrastructure and molecular phylogenetic position of a novel euglenozoan with extrusive episymbiotic bacteria: Bihospites bacati n. gen. et sp. (Symbiontida)
Breglia, S. A., Yubuki, N., Hoppenrath, M., et al. (2010) · BMC Microbiology · doi:10.1186/1471-2180-10-145 · Cited by 57
Self-citation
Andalucia (n. gen.)—the Deepest Branch Within Jakobids (Jakobida; Excavata), Based on Morphological and Molecular Study of a New Flagellate from Soil
Lara, E., Chatzinotas, A., & Simpson, A. G. B. (2006) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2005.00081.x · Cited by 56
Self-citation
Molecular phylogenetic and zoospore ultrastructural analyses ofChytridium ollaestablish the limits of a monophyletic Chytridiales
Vélez, C. G., Letcher, P. M., Schultz, S., et al. (2011) · Mycologia · doi:10.3852/10-001 · Cited by 56
Alveolate Phylogeny Inferred using Concatenated Ribosomal Proteins
Bachvaroff, T. R., Handy, S. M., Place, A. R., & Delwiche, C. F. (2011) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2011.00555.x · Cited by 55
The Novel Marine Gliding Zooflagellate Genus Mantamonas (Mantamonadida ord. n.: Apusozoa)
Glücksman, E., Snell, E. A., Berney, C., et al. (2010) · Protist · doi:10.1016/j.protis.2010.06.004 · Cited by 55
Kappamyces, a new genus in the Chytridiales (Chytridiomycota)
Letcher, P. M., & Powell, M. J. (2005) · Nova Hedwigia · doi:10.1127/0029-5035/2005/0080-0115 · Cited by 54
The Polychytriales ord. nov. contains chitinophilic members of the rhizophlyctoid alliance
Longcore, J. E., & Simmons, D. R. (2012) · Mycologia · doi:10.3852/11-193 · Cited by 54
Molecular phylogeny of the Blastocladiomycota (Fungi) based on nuclear ribosomal DNA
Porter, T. M., Martin, W. W., James, T. Y., et al. (2011) · Fungal Biology · doi:10.1016/j.funbio.2011.02.004 · Cited by 54
New Genera, Species, and Improved Phylogeny of Glissomonadida (Cercozoa)
Howe, A. T., Bass, D., Chao, E. E. Y., et al. (2011) · Protist · doi:10.1016/j.protis.2011.06.002 · Cited by 53
Self-citation
Phylogenetic relationships of trypanosomatids parasitising true bugs (Insecta: Heteroptera) in sub-Saharan Africa
Votýpka, J., Klepetková, H., Jirků, M., et al. (2012) · International Journal for Parasitology · doi:10.1016/j.ijpara.2012.03.007 · Cited by 51
Bayesian relaxed clock estimation of divergence times in foraminifera
Groussin, M., Pawlowski, J. W., & Yang, Z. (2011) · Molecular Phylogenetics and Evolution · doi:10.1016/j.ympev.2011.06.008 · Cited by 51
Self-citation
Eumycetozoans and molecular systematics
Spiegel, F. W., Lee, S. B., & Rusk, S. A. (1995) · Canadian Journal of Botany · doi:10.1139/b95-317 · Cited by 50
Self-citation
SSU rRNA Reveals a Sequential Increase in Shell Complexity Among the Euglyphid Testate Amoebae (Rhizaria: Euglyphida)
Lara, E., Heger, T. J., Mitchell, E. A. D., et al. (2007) · Protist · doi:10.1016/j.protis.2006.11.006 · Cited by 50
Self-citation
Nephromyces , a beneficial apicomplexan symbiont in marine animals
Saffo, M. B., McCoy, A. M., Rieken, C. W., & Slamovits, C. H. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1002335107 · Cited by 47
Molecular systematics of marine gregarines (Apicomplexa) from North-eastern Pacific polychaetes and nemerteans, with descriptions of three novel species: Lecudina phyllochaetopteri sp. nov., Difficilina tubulani sp. nov. and Difficilina paranemertis sp. nov.
Rueckert, S., Chantangsi, C., & Leander, B. S. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.016436-0 · Cited by 47
Self-citation
A Model for Taxonomic Work on Homoxenous Coccidia: Redescription, Host Specificity, and Molecular Phylogeny ofEimeria ranaeDobell, 1909, with a Review of Anuran‐HostEimeria(Apicomplexa: Eimeriorina)
Jirkú, M., Jirků, M., Jirků, M., et al. (2009) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2008.00362.x · Cited by 46
Ultrastructural and molecular delineation of the Chytridiaceae (Chytridiales)
Letcher, P. M., Powell, M. J., Chambers, J. G., et al. (2005) · Canadian Journal of Botany · doi:10.1139/b05-115 · Cited by 45
Reevaluation of the Phylogenetic Relationship between Mobilid and Sessilid Peritrichs (Ciliophora, Oligohymenophorea) Based on Small Subunit rRNA Genes Sequences
Gong, Y., Yu, Y., Villalobo, E., et al. (2006) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2006.00121.x · Cited by 45
Correct identification of species makes the amoebozoan rRNA tree congruent with morphology for the order Leptomyxida Page 1987; with description of Acramoeba dendroida n. g., n. sp., originally misidentified as ‘Gephyramoeba sp.’
Смирнов, А. В., Nassonova, E., & Cavalier‐Smith, T. (2007) · European Journal of Protistology · doi:10.1016/j.ejop.2007.08.001 · Cited by 44
Morphological and molecular phylogeny of dileptid and tracheliid ciliates: Resolution at the base of the class Litostomatea (Ciliophora, Rhynchostomatia)
Vďačný, P., Orsi, W. D., Bourland, W. A., et al. (2011) · European Journal of Protistology · doi:10.1016/j.ejop.2011.04.006 · Cited by 44
The classification of Spizellomyces, Gaertneriomyces, Triparticalcar, and Kochiomyces (Spizellomycetales, Chytridiomycetes)
Barr, D. J. S. (1984) · Canadian Journal of Botany · doi:10.1139/b84-161 · Cited by 43
An SSU rDNA barcoding approach to the diversity of marine interstitial cercozoans, including descriptions of four novel genera and nine novel species
Chantangsi, C., & Leander, B. S. (2009) · INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY · doi:10.1099/ijs.0.013888-0 · Cited by 42
Reconsideration of Phylogenetic Relationships of the Subclass Peritrichia (Ciliophora, Oligohymenophorea) Based on Small Subunit Ribosomal RNA Gene Sequences, with the Establishment of a New Subclass Mobilia Kahl, 1933
Zhan, Z., Xu, K., Warren, A., et al. (2009) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2009.00435.x · Cited by 42
Planomonadida ord. nov. (Apusozoa): Ultrastructural Affinity with Micronuclearia podoventralis and Deep Divergences within Planomonas gen. nov.
Cavalier‐Smith, T., Chao, E. E. Y., Stechmann, A., et al. (2008) · Protist · doi:10.1016/j.protis.2008.06.002 · Cited by 40
Rigifila ramosa n. gen., n. sp., a Filose Apusozoan with a Distinctive Pellicle, is Related to Micronuclearia
Yabuki, A., Ishida, K., & Cavalier‐Smith, T. (2012) · Protist · doi:10.1016/j.protis.2012.04.005 · Cited by 39
Ultrastructure and Ribosomal RNA Phylogeny of the Free‐Living Heterotrophic Flagellate Dysnectes brevis n. gen., n. sp., a New Member of the Fornicata
Yubuki, N., Inagaki, Y., Nakayama, T., et al. (2007) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2007.00252.x · Cited by 37
Ultrastructure, SSU rRNA Gene Sequences and Phylogenetic Relationships of Flamella Schaeffer, 1926 (Amoebozoa), with Description of Three New Species
Kudryavtsev, A. A., Wylezich, C., Schlegel, M., et al. (2008) · Protist · doi:10.1016/j.protis.2008.09.004 · Cited by 36
Subulatomonas tetraspora nov. gen. nov. sp. is a Member of a Previously Unrecognized Major Clade of Eukaryotes
Katz, L. A., Grant, J. R., Parfrey, L. W., Kanegusuku, A. G., O’Kelly, C. J., Anderson, O. R., Molestina, R. E., & Nerad, T. A. (2011) · Protist · doi:10.1016/j.protis.2011.05.002 · Cited by 36
Self-citation
Molecular Phylogeny of Pacific Archigregarines (Apicomplexa), Including Descriptions of Veloxidium leptosynaptae n. gen., n. sp., from the Sea Cucumber Leptosynapta clarki (Echinodermata), and Two New Species of Selenidium
Wakeman, K. C., & Leander, B. S. (2012) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2012.00616.x · Cited by 36
Exploring Alternative Systems of Classification
Kron, K. A. (1996) · Aliso · doi:10.5642/aliso.19961502.05 · Cited by 36
Morphology and molecular phylogeny of a marine interstitial tetraflagellate with putative endosymbionts: Auranticordis quadriverberis n. gen. et sp. (Cercozoa)
Chantangsi, C., Esson, H. J., & Leander, B. S. (2008) · BMC Microbiology · doi:10.1186/1471-2180-8-123 · Cited by 34
Tsukubamonas globosa n. gen., n. sp., A Novel Excavate Flagellate Possibly Holding a Key for the Early Evolution in “Discoba”
Yabuki, A., Nakayama, T., Naoji Yubuki, A., Hashimoto, T., Ishida, K., & Inagaki, Y. (2011) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2011.00552.x · Cited by 34
Distribution and Phylogenetic Relationships of Freshwater Thaumatomonads with a Description of the New SpeciesThaumatomonas coloniensisn. sp.
Wylezich, C., Mylnikov, A. P., Weitere, M., et al. (2007) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2007.00274.x · Cited by 34
The Ultrastructure of Ancyromonas, a Eukaryote without Supergroup Affinities
Heiss, A. A., Walker, G., & Simpson, A. G. B. (2011) · Protist · doi:10.1016/j.protis.2010.08.004 · Cited by 32
Self-citation
Addendum to the synoptic review of red algal genera
Wynne, M. J., & Schneider, C. W. (2010) · Botanica Marina · doi:10.1515/bot.2010.039 · Cited by 31
Structural and Functional Implications of an Unusual Foraminiferal β-Tubulin
Habura, A., Wegener, L., Travis, J. L., & Bowser, S. S. (2005) · Molecular Biology and Evolution · doi:10.1093/molbev/msi190 · Cited by 31
Self-citation
Description and Phylogenetic Relationships of Spumochlamys perforata n. sp. and Spumochlamys bryora n. sp. (Amoebozoa, Arcellinida)
Kudryavtsev, A. A., Pawlowski, J. W., & Hausmann, K. (2009) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2009.00430.x · Cited by 31
Self-citation
Phylogeny of Powellomycetaceae fam. nov. and description of Geranomyces variabilis gen. et comb. nov.
Simmons, D. R. (2011) · Mycologia · doi:10.3852/11-039 · Cited by 31
Partenskyella glossopodia gen. et sp. nov., the First Report of a Chlorarachniophyte that Lacks a Pyrenoid
Ota, S., Vaulot, D., Gall, F. L., et al. (2008) · Protist · doi:10.1016/j.protis.2008.09.003 · Cited by 29
Paracercomonas Kinetid Ultrastructure, Origins of the Body Plan of Cercomonadida, and Cytoskeleton Evolution in Cercozoa
Cavalier‐Smith, T., & Karpov, S. A. (2011) · Protist · doi:10.1016/j.protis.2011.06.004 · Cited by 26
A proposed phylogeny of the flagellated protostelids
Spiegel, F. W. (1991) · Biosystems · doi:10.1016/0303-2647(91)90017-f · Cited by 26
Self-citation
Fonticula Alba: A New Cellular Slime Mold (Acrasiomycetes)
Worley, A. C., Raper, K. B., & Hohl, M. (1979) · Mycologia · doi:10.1080/00275514.1979.12021068 · Cited by 26
Multigene phylogenetic analyses including diverse radiolarian species support the “Retaria” hypothesis — The sister relationship of Radiolaria and Foraminifera
Ishitani, Y., Ishikawa, S. A., Inagaki, Y., et al. (2011) · Marine Micropaleontology · doi:10.1016/j.marmicro.2011.06.007 · Cited by 25
Phylogenetic and Morphological Diversity of Novel Soil Cercomonad Species with a Description of Two New Genera (Nucleocercomonas and Metabolomonas)
Brabender, M., Kiss, Á. K., Domonell, A., et al. (2012) · Protist · doi:10.1016/j.protis.2012.02.002 · Cited by 25
Bridge over troublesome plastids
Keeling, P. J. (2008) · Nature · doi:10.1038/451896a · Cited by 24
A new chytridiomycete parasitizing the tardigrade Milnesium tardigradum
Dewel, R. A., Joines, J. D., & Bond, J. J. (1985) · Canadian Journal of Botany · doi:10.1139/b85-211 · Cited by 24
Obligate amoebae of the protostelids: Significance for the concept of Eumycetozoa
Spiegel, F. W., & Feldman, J. (1985) · Biosystems · doi:10.1016/0303-2647(85)90037-1 · Cited by 23
Self-citation
Description of Trichotokara nothriae n. gen. et sp. (Apicomplexa, Lecudinidae) – An intestinal gregarine of Nothria conchylega (Polychaeta, Onuphidae)
Rueckert, S., & Leander, B. S. (2010) · Journal of Invertebrate Pathology · doi:10.1016/j.jip.2010.03.005 · Cited by 23
Self-citation
Mataza hastifera n. g., n. sp.: A Possible New Lineage in the Thecofilosea (Cercozoa)
Yabuki, A., & Ishida, K. (2011) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2010.00524.x · Cited by 22
Alpha‐Tubulin and Small Subunit rRNA Phylogenies of Peritrichs Are Congruent and Do Not Support the Clustering of Mobilids and Sessilids (Ciliophora, Oligohymenophorea)
Gong, Y., Xu, K., Zhan, Z., et al. (2010) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2010.00472.x · Cited by 22
Phylogenetic position and description of Rhytidocystis cyamus sp. n. (Apicomplexa, Rhytidocystidae): a novel intestinal parasite of the north-eastern Pacific ‘stink worm’ (Polychaeta, Opheliidae, Travisia pupa)
Rueckert, S., & Leander, B. S. (2009) · Marine Biodiversity · doi:10.1007/s12526-009-0014-7 · Cited by 22
Self-citation
Classifying species versus naming clades
Cantino, P. D. (2004) · Taxon · doi:10.2307/4135453 · Cited by 21
Clarifying the Taxonomic Identity of a Phylogenetically Important Group of Eukaryotes: Planomonas is a Junior Synonym of Ancyromonas
Heiss, A. A., Walker, G., & Simpson, A. G. B. (2010) · Journal of Eukaryotic Microbiology · doi:10.1111/j.1550-7408.2010.00477.x · Cited by 21
Self-citation
A study of the fine structure and the mitosis of a lamellicristate amoeba, Micronuclearia podoventralis gen. et sp. nov. (Nucleariidae, Rotosphaerida)
Mikrjukov, K. A., & Mylnikov, A. P. (2001) · European Journal of Protistology · doi:10.1078/0932-4739-00783 · Cited by 20
Alogomyces tanneri gen. et sp. nov., a chytrid in Lobulomycetales from horse manure
Simmons, D. R., Letcher, P. M., Powell, M. J., et al. (2012) · Mycologia · doi:10.3852/11-043 · Cited by 18
Ultrastructure, Life Cycle and Molecular Phylogenetic Position of a Novel Marine Sand-Dwelling Cercozoan: Clautriavia biflagellata n. sp.
Chantangsi, C., & Leander, B. S. (2009) · Protist · doi:10.1016/j.protis.2009.09.001 · Cited by 18
Ultrastructure of Allapsa vibrans and the Body Plan of Glissomonadida (Cercozoa)
Cavalier‐Smith, T., & Oates, B. R. (2011) · Protist · doi:10.1016/j.protis.2011.10.006 · Cited by 17
Prospects for elucidating the phylogeny of the Apicomplexa
Morrison, D. A. (2008) · Parasite · doi:10.1051/parasite/2008153191 · Cited by 16
High-throughput sequencing of Astrammina rara: Sampling the giant genome of a giant foraminiferan protist
Habura, A., Hou, Y., Reilly, A. A., et al. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-169 · Cited by 15

Research works printed but not linked: 24

Pérez‐Cordón G., 2006, The confused taxonomy of Cryptosporidium, Rev. Per. Biol., 13, 143
10.1371/journal.pone.0018163 · DOI
Jankowski A. W, 2007, Protista. Part 2, Handbook on Zoology, 415
Meisterfeld R, 2002, The Illustrated Guide to the Protozoa, 1054
10.1111/j.1550-7408.2010.00477.x · DOI
10.1093/molbev/msl120 · DOI
10.1098/rspb.2008.1358 · DOI
10.1093/sysbio/syq037 · DOI
10.1073/pnas.0807880106 · DOI
Couch J. N., 1962, Validation of the family Coelomomycetaceae and certain species and varieties of Coelomomyces, J. Elisha Mitchell Sci. Soc., 78, 135
Doweld A. B, 2001, Prosyllabus Tracheophytorum. Tentamen Systematis Plantarum Vascularium (Tracheophyta)
Fischer A, 1892, Phycomycetes. Die Pilze Deutschlands, Oestrerreichs und der Schweiz. Rabenhorst, Kryptoamen‐Fl., 1, 1
10.1080/15572536.2006.11832616 · DOI
Kirk P. M., 2008, Dictionary of the Fungi
Kirk P. M., 2001, Dictionary of the Fungi
Korschikoff A. A., 1931, Notizen uber einige neue apochlorotische. Algen, Archiv Protistenkd., 74, 249
Petersen H. E., 1909, Studier over Ferskvands‐Phykomyceter, Botanisk Tidsskrift, 29, 345
Petersen H. E., 1910, An account of Danish freshwater phycomycetes, with biological and systematical remarks, Ann. Mycol., 8, 494
Schaffner J. H., 1909, The classification of plants, IV, Ohio Nat., 9, 446
10.1080/15572536.2006.11832635 · DOI
10.1093/molbev/msp185 · DOI
10.1186/1471-2148-10-377 · DOI
10.1016/j.protis.2010.10.002 · DOI
10.1111/j.1550-7408.2008.00379.x · DOI

Sorted by citations

Microalgae for High-Value Products Towards Human Health and Nutrition
Barkia, I., Saari, N., & Manning, S. R. (2019) · Marine Drugs · doi:10.3390/md17050304 · Cited by 719
Paleobiological Perspectives on Early Eukaryotic Evolution
Knoll, A. H. (2014) · Cold Spring Harbor Perspectives in Biology · doi:10.1101/cshperspect.a016121 · Cited by 394
The Syntrophy hypothesis for the origin of eukaryotes revisited
López-García, P., & Moreira, D. (2020) · Nature Microbiology · doi:10.1038/s41564-020-0710-4 · Cited by 201
The Weng'an biota and the Ediacaran radiation of multicellular eukaryotes
Xiao, S., Muscente, A. D., Chen, L., Zhou, C., Schiffbauer, J. D., Wood, A. D., Polys, N. F., & Yuan, X. (2014) · National Science Review · doi:10.1093/nsr/nwu061 · Cited by 172
KLF/SP Transcription Factor Family Evolution: Expansion, Diversification, and Innovation in Eukaryotes
Presnell, J. S., Schnitzler, C. E., & Browne, W. E. (2015) · Genome Biology and Evolution · doi:10.1093/gbe/evv141 · Cited by 119

See all 1,680

Authors: Adl, S. M., Simpson, A. G. B., Lane, C. E., Lukeš, J., Bass, D., Bowser, S. S., Brown, M. W., Burki, F., Dunthorn, M., Hampl, V., Heiss, A., Hoppenrath, M., Lara, E., le Gall, L., Lynn, D. H., McManus, H., Mitchell, E. A. D., Mozley‐Stanridge, S. E., Parfrey, L. W., Pawlowski, J., Rueckert, S., Shadwick, L., Schoch, C. L., Smirnov, A., & Spiegel, F. W.
Affiliations: Dalhousie University (CA)
University of Rhode Island (US)
University of South Bohemia in České Budějovice (CZ)
Natural History Museum (GB)
New York State Department of Health (US)
University of British Columbia (CA)
University of Kaiserslautern (DE)
Department of Parasitology Charles University Prague 128 43 Praha 2 Czech Republic
Senckenberg am Meer (DE)
University of Neuchâtel (CH)
Muséum National d'Histoire Naturellem, UMR 7138 Systématique, Adaptation et Evolution Paris 75231 Cedex Paris 05 France
University of Guelph (CA)
Le Moyne College (US)
Department of Biology Middle Georgia College Cochran Georgia 31014 USA
University of Colorado Boulder (US)
University of Geneva (CH)
Edinburgh Napier University (GB)
Department of Biological Sciences University of Arkansas Fayetteville Arkansas 72701 USA
National Institutes of Health (US)
Department of Invertebrate Zoology St.Petersburg State University St. Petersburg 199034 Russia
University of Arkansas at Fayetteville (US)
ORCID: Adl, Sina M.
Simpson, Alastair G. B.
Lane, Christopher E.
Lukeš, Julius
Bass, David
Brown, Matthew W.
Burki, Fabien
Dunthorn, Micah
Heiss, Aaron
Hoppenrath, Mona
Lara, Enrique
Lynn, Denis H.
McManus, Hilary
Mitchell, Edward A. D.
Parfrey, Laura W.
Pawlowski, Jan
Rueckert, Sonja
Schoch, Conrad L.
Spiegel, Frederick W.
Venue: Journal of Eukaryotic Microbiology
Publisher: Wiley
Published: 2012-09
Volume: 59
Issue: 5
Pages: 429-514
ISSN: 1066-5234 (ISSN-L)
1550-7408
DOI: 10.1111/j.1550-7408.2012.00644.x
PMC: PMC3483872
OpenAlex: W2073302338
Cited by: 1,680
References: 212
Citations by year: 2026: 34 · 2025: 63 · 2024: 65 · 2023: 102 · 2022: 83 · 2021: 113 · 2020: 105 · 2019: 105 · 2018: 174 · 2017: 225 · 2016: 215 · 2015: 162 · 2014: 147 · 2013: 78 · 2012: 9
FWCI: 51.08
Type: journal article
Language: en
Update notices: erratum (2013-03-11)
Open access: bronze
doi.org
Licence: onlinelibrary.wiley.com/termsAndConditions#vor (vor, 27 d)
Locations: Journal of Eukaryotic Microbiology (publishedVersion)
PubMed (publishedVersion)
Europe PMC (PubMed Central) (acceptedVersion)
PubMed Central (acceptedVersion)
reroDoc Digital Library (submittedVersion)
Journal of Media Literacy Education (submittedVersion, cc-by)
HAL (submittedVersion)
ASEP (submittedVersion, public-domain)
Universitätsbibliographie, Universität Duisburg-Essen (submittedVersion)
Research Output (Edinburgh Napier University) (submittedVersion)
Edinburgh Napier Research Repository (Edinburgh Napier University) (submittedVersion)
Funders: National Institutes of Health
Natural Environment Research Council (NE/H009426/1, NE/H000887/1)
U.S. National Library of Medicine (ZIHLM200888)
Topics: Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Protist diversity and phylogeny
Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
Life Sciences › Agricultural and Biological Sciences › Ecology, Evolution, Behavior and Systematics › Plant Diversity and Evolution
Keywords: protists, supergroups, phylogenetic tree, eukaryotic diversity, metagenomics
MeSH terms: Terminology as Topic, Phylogeny, Genome, Eukaryota

About these checks

Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.

Statistics and arithmetic are recomputed, not judged.

Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.

What counts as a claim ›How we measure confidence ›How we check this ›

Are you an author, or do you see a problem with this page? Request a review

The Revised Classification of Eukaryotes

Abstract

Overview

Integrity signals

Verification

Claims the paper makes

Claims other papers make about this one

Self-check

Citations

Cites

Cited by

Related

Metadata

Record

About these checks