The DOI matches its Crossref record; 3 of the 3 references it cites were found in a registry or an index.
QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations
Abstract
Summary: The majority of agronomically important crop traits are quantitative, meaning that they are controlled by multiple genes each with a small effect (quantitative trait loci, QTL s). Mapping and isolation of QTL s is important for efficient crop breeding by marker‐assisted selection (MAS) and for a better understanding of the molecular mechanisms underlying the traits. However, since it requires the development and selection of DNA markers for linkage analysis, QTL analysis has been time‐consuming and labor‐intensive. Here we report the rapid identification of plant QTL s by whole‐genome resequencing of DNA s from two populations each composed of 20–50 individuals showing extreme opposite trait values for a given phenotype in a segregating progeny. We propose to name this approach QTL‐seq as applied to plant species. We applied QTL‐seq to rice recombinant inbred lines and F 2 populations and successfully identified QTL s for important agronomic traits, such as partial resistance to the fungal rice blast disease and seedling vigor. Simulation study showed that QTL‐seq is able to detect QTL s over wide ranges of experimental variables, and the method can be generally applied in population genomics studies to rapidly identify genomic regions that underwent artificial or natural selective sweeps.
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Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
Fast and accurate short read alignment with Burrows-Wheeler transform
Li, H., & Durbin, R. (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp324 · Cited by 58,607
Food Security: The Challenge of Feeding 9 Billion People
Godfray, H. C. J., Beddington, J. R., Crute, I. R., Haddad, L., Lawrence, D., Muir, J. F., Pretty, J., Robinson, S., Thomas, S. M., & Toulmin, C. (2010) · Science · doi:10.1126/science.1185383 · Cited by 11,943
Cited by
Enhancing genetic gain in the era of molecular breeding
Xu, Y., Li, P., Zou, C., Lu, Y., Xie, C., Zhang, X., Prasanna, B. M., & Olsen, M. S. (2017) · Journal of Experimental Botany · doi:10.1093/jxb/erx135 · Cited by 336
Dai, T., Yang, J., Zhao, C., Chen, J., Zhang, C., Wang, Z., Peng, Q., Liu, P., Miao, J., & Liu, X. (2024) · Journal of Agricultural and Food Chemistry · doi:10.1021/acs.jafc.3c08485 · Cited by 27
Leawtrakun, J., Aesomnuk, W., Khanthong, S., Dumhai, R., Songtoasesakul, D., Phosuwan, S., Nuanpirom, J., Charoensawan, V., Siangliw, J. L., Ruanjaichon, V., et al. (2024) · Agronomy · doi:10.3390/agronomy14050929 · Cited by 5
Metadata
- Authors
- Takagi, H., Abe, A., Yoshida, K., Kosugi, S., Natsume, S., Mitsuoka, C., Uemura, A., Utsushi, H., Tamiru, M., Takuno, S., Innan, H., Cano, L. M., Kamoun, S., & Terauchi, R.
- Venue
- The Plant Journal
- Publisher
- Wiley
- Published
- 2013-02-18
- Volume
- 74
- Issue
- 1
- Pages
- 174-183
- ISSN
- 0960-7412 (ISSN-L)
- 1365-313X
- OpenAlex
- W2113280067
- Cited by
- 1,490
- References
- 3
- FWCI
- 23.06
- Type
- journal article
- Language
- en
- Open access
- closed
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- Takagi, H., Abe, A., Yoshida, K., Kosugi, S., Natsume, S., Mitsuoka, C., Uemura, A., Utsushi, H., Tamiru, M., Takuno, S., Innan, H., Cano, L. M., Kamoun, S., & Terauchi, R. (2013). QTL‐seq: rapid mapping of quantitative trait loci in rice by whole genome resequencing of DNA from two bulked populations. The Plant Journal. https://doi.org/10.1111/tpj.12105
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