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Maize Genome Sequencing by Methylation Filtration
Abstract
Gene enrichment strategies offer an alternative to sequencing large and repetitive genomes such as that of maize. We report the generation and analysis of nearly 100,000 undermethylated (or methylation filtration) maize sequences. Comparison with the rice genome reveals that methylation filtration results in a more comprehensive representation of maize genes than those that result from expressed sequence tags or transposon insertion sites sequences. About 7% of the repetitive DNA is unmethylated and thus selected in our libraries, but potentially active transposons and unmethylated organelle genomes can be identified. Reverse transcription polymerase chain reaction can be used to finish the maize transcriptome.
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Citations
Cited by
CpG islands and the regulation of transcription
Deaton, A. M., & Bird, A. (2011) · Genes & Development · doi:10.1101/gad.2037511 · Cited by 3,187
DNA methylation landscapes: Provocative insights from epigenomics
Suzuki, M. M., & Bird, A. (2008) · Nature Reviews Genetics · doi:10.1038/nrg2341 · Cited by 3,039
Oil palm genome sequence reveals divergence of interfertile species in Old and New worlds
Singh, R., Ong-Abdullah, M., Low, E.-T. L., Manaf, M. A. A., Rosli, R., Nookiah, R., Ooi, L. C.-L., Ooi, S., Chan, K.-L., Halim, M. A., et al. (2013) · Nature · doi:10.1038/nature12309 · Cited by 614
Self-citationGenome-wide patterns of genetic variation among elite maize inbred lines
Lai, J., Li, R., Xu, X., Jin, W., Xu, M., Zhao, H., Xiang, Z., Song, W., Ying, K., Zhang, M., et al. (2010) · Nature Genetics · doi:10.1038/ng.684 · Cited by 470
Bortiri, E., Chuck, G., Vollbrecht, E., Rocheford, T., Martienssen, R., & Hake, S. (2006) · The Plant Cell · doi:10.1105/tpc.105.039032 · Cited by 333
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Metadata
- Authors
- Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A., & McCombie, W. R.
- Venue
- Science
- Published
- 2003-12-19
- Volume
- 302
- Issue
- 5653
- Pages
- 2115-2117
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2089150572
- Cited by
- 216
- References
- 0
- FWCI
- 27.15
- Type
- journal article
- Language
- en
- Open access
- closed
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- Palmer, L. E., Rabinowicz, P. D., O'Shaughnessy, A. L., Balija, V. S., Nascimento, L. U., Dike, S., de la Bastide, M., Martienssen, R. A., & McCombie, W. R. (2003). Maize Genome Sequencing by Methylation Filtration. Science. https://doi.org/10.1126/science.1091265
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