Distributions of Microbial Activities in Deep Subseafloor Sediments
Open accessAbstract
Diverse microbial communities and numerous energy-yielding activities occur in deeply buried sediments of the eastern Pacific Ocean. Distributions of metabolic activities often deviate from the standard model. Rates of activities, cell concentrations, and populations of cultured bacteria vary consistently from one subseafloor environment to another. Net rates of major activities principally rely on electron acceptors and electron donors from the photosynthetic surface world. At open-ocean sites, nitrate and oxygen are supplied to the deepest sedimentary communities through the underlying basaltic aquifer. In turn, these sedimentary communities may supply dissolved electron donors and nutrients to the underlying crustal biosphere.
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Life on Earth clings tenaciously to almost any environment where we can look for it, including Antarctica's Dry Valleys and deep below the seafloor.
“life on Earth clings tenaciously to almost any environment where we can look for it, including Antarctica's Dry Valleys and deep below the seafloor (Cary et al. 2010; D'Hondt et al. 2004).”
From The Climate of Early Mars (2016) · cites this paper as D'Hondt et al. 2004
Cites
Prokaryotes: The unseen majority
Whitman, W. B., Coleman, D. C., & Wiebe, W. J. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.12.6578 · Cited by 4,871 · see citing works
Froelich, P. N., Klinkhammer, G. P., Bender, M. L., Luedtke, N. A., Heath, G. R., Cullen, D., Dauphin, P., Hammond, D., Hartman, B., & Maynard, V. (1979) · Geochimica et Cosmochimica Acta · doi:10.1016/0016-7037(79)90095-4 · Cited by 3,368 · see citing works
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Quantifying the degradation of organic matter in marine sediments: A review and synthesis
Arndt, S., Jørgensen, B. B., LaRowe, D. E., Middelburg, J. J., Pancost, R. D., & Regnier, P. (2013) · Earth-Science Reviews · doi:10.1016/j.earscirev.2013.02.008 · Cited by 1,040 · see citing works
Self-citationGlobal distribution of microbial abundance and biomass in subseafloor sediment
Kallmeyer, J., Pockalny, R., Adhikari, R. R., Smith, D. C., & D’Hondt, S. (2012) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1203849109 · Cited by 956 · see citing works
Feast and famine–Microbial life in the deep-sea bed
Jørgensen, B. B., & Boetius, A. (2007) · Nature Reviews Microbiology · doi:10.1038/nrmicro1745 · Cited by 671 · see citing works
Self-citationWordsworth, R. D. (2016) · Annual Review of Earth and Planetary Sciences · doi:10.1146/annurev-earth-060115-012355 · Cited by 416 · see citing works
Microbially catalyzed dolomite formation: From near-surface to burial
Petrash, D. A., Bialik, O. M., Bontognali, T. R. R., Vasconcelos, C., Roberts, J. A., McKenzie, J. A., & Konhauser, K. O. (2017) · Earth-Science Reviews · doi:10.1016/j.earscirev.2017.06.015 · Cited by 338 · see citing works
Riedinger, N., Formolo, M. J., Lyons, T. W., Henkel, S., Beck, A., & Kasten, S. (2014) · Geobiology · doi:10.1111/gbi.12077 · Cited by 231 · see citing works
Dolomite formation in the dynamic deep biosphere: results from the Peru Margin
MEISTER, P., MCKENZIE, J. A., VASCONCELOS, C., BERNASCONI, S., FRANK, M., GUTJAHR, M., & SCHRAG, D. P. (2007) · Sedimentology · doi:10.1111/j.1365-3091.2007.00870.x · Cited by 168 · see citing works
Self-citationTrembath-Reichert, E., Morono, Y., Ijiri, A., Hoshino, T., Dawson, K. S., Inagaki, F., & Orphan, V. J. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1707525114 · Cited by 112 · see citing works
Self-citationLong-term sedimentary recycling of rare sulphur isotope anomalies
Reinhard, C. T., Planavsky, N. J., & Lyons, T. W. (2013) · Nature · doi:10.1038/nature12021 · Cited by 113 · see citing works
Holm, N. G., Dumont, M., Ivarsson, M., & Konn, C. (2006) · Geochemical Transactions · doi:10.1186/1467-4866-7-7 · Cited by 89 · see citing works
Self-citationMicrobial turnover times in the deep seabed studied by amino acid racemization modelling
Braun, S., Mhatre, S. S., Jaussi, M., Røy, H., Kjeldsen, K. U., Pearce, C., Seidenkrantz, M.-S., Jørgensen, B. B., & Lomstein, B. A. (2017) · Scientific Reports · doi:10.1038/s41598-017-05972-z · Cited by 64 · see citing works
Self-citationBasal DNA repair machinery is subject to positive selection in ionizing-radiation-resistant bacteria
Sghaier, H., Ghedira, K., Benkahla, A., & Barkallah, I. (2008) · BMC Genomics · doi:10.1186/1471-2164-9-297 · Cited by 71 · see citing works
Gu, H.-J., Sun, Q.-L., Luo, J.-C., Zhang, J., & Sun, L. (2019) · Frontiers in Cellular and Infection Microbiology · doi:10.3389/fcimb.2019.00183 · Cited by 57 · see citing works
Organic-rich sediments in brine-filled Shaban- and Kebrit deeps, northern Red Sea
Botz, R., Schmidt, M., Wehner, H., Hufnagel, H., & Stoffers, P. (2007) · Chemical Geology · doi:10.1016/j.chemgeo.2007.07.004 · Cited by 24 · see citing works
- Authors
- D'Hondt, S., Jørgensen, B. B., Miller, D. J., Batzke, A., Blake, R., Cragg, B. A., Cypionka, H., Dickens, G. R., Ferdelman, T., Hinrichs, K.-U., Holm, N. G., Mitterer, R., Spivack, A., Wang, G., Bekins, B., Engelen, B., Ford, K., Gettemy, G., Rutherford, S. D., Sass, H., Skilbeck, C. G., Aiello, I. W., Guèrin, G., House, C. H., Inagaki, F., Meister, P., Naehr, T., Niitsuma, S., Parkes, R. J., Schippers, A., Smith, D. C., Teske, A., Wiegel, J., Padilla, C. N., & Acosta, J. L. S.
- Affiliations
- Carl von Ossietzky Universität Oldenburg (DE)
- Ocean Drilling Program Leg 201 Shipboard Scientific Party.
- Corresponding author
- D'Hondt, Steven
- ORCID
- D'Hondt, Steven
- Jørgensen, Bo Barker
- Batzke, Anja
- Cypionka, Heribert
- Dickens, Gerald R.
- Ferdelman, Timothy
- Hinrichs, Kai-Uwe
- Wang, Guizhi
- Bekins, Barbara
- Engelen, Bert
- Ford, Kathryn
- Gettemy, Glen
- Sass, Henrik
- Skilbeck, C. Gregory
- Aiello, Ivano W.
- House, Christopher H.
- Inagaki, Fumio
- Meister, Patrick
- Schippers, Axel
- Smith, David C.
- Teske, Andreas
- Wiegel, Juergen
- Venue
- Science
- Published
- 2004-12-24
- Volume
- 306
- Issue
- 5705
- Pages
- 2216-2221
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- OpenAlex
- W2143441775
- Cited by
- 774
- References
- 2
- Citations by year
- 2026: 13 · 2025: 23 · 2024: 22 · 2023: 24 · 2022: 23 · 2021: 28 · 2020: 26 · 2019: 43 · 2018: 26 · 2017: 31 · 2016: 44 · 2015: 45 · 2014: 57 · 2013: 44 · 2012: 47
- FWCI
- 28.53
- Type
- journal article
- Language
- en
- Open access
- Licence
- cc-by
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Journal of Media Literacy Education (submittedVersion, cc-by)
- HELIN Digital Commons (submittedVersion)
- OPUS - Open Publications of UTS Scholars (University of Technology Sydney) (submittedVersion)
- Topics
- Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
- Keywords
- subseafloor sediments, deep-sea microbial communities, microbial metabolic activity, electron acceptors, electron donors, nitrate, oxygen, basaltic aquifers, cell density, eastern Pacific, microbial distribution
- MeSH terms
- Bacteria, Carbon, Electron Transport, Iron, Manganese, Methane, Nitrates, Oxidation-Reduction, Pacific Ocean, Peru, Photosynthesis, Seawater, Sulfates, Thermodynamics, Colony Count, Microbial, Oxidants, Ecosystem, Geologic Sediments
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