Germline Allele-Specific Expression of TGFBR1 Confers an Increased Risk of Colorectal Cancer
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Much of the genetic predisposition to colorectal cancer (CRC) in humans is unexplained. Studying a Caucasian-dominated population in the United States, we showed that germline allele-specific expression (ASE) of the gene encoding transforming growth factor–β (TGF-β) type I receptor, TGFBR1 , is a quantitative trait that occurs in 10 to 20% of CRC patients and 1 to 3% of controls. ASE results in reduced expression of the gene, is dominantly inherited, segregates in families, and occurs in sporadic CRC cases. Although subtle, the reduction in constitutive TGFBR1 expression alters SMAD-mediated TGF-β signaling. Two major TGFBR1 haplotypes are predominant among ASE cases, which suggests ancestral mutations, but causative germline changes have not been identified. Conservative estimates suggest that ASE confers a substantially increased risk of CRC (odds ratio, 8.7; 95% confidence interval, 2.6 to 29.1), but these estimates require confirmation and will probably show ethnic differences.
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Preclinical studies highlight extensive influences of germline genetic modifiers of TGF-β activity on tumorigenesis, vascular integrity, and allergy.
“preclinical studies highlight extensive influences of germline genetic modifiers of TGF-β activity on tumorigenesis, vascular integrity and allergy392,398–400.”
From TGFβ biology in cancer progression and immunotherapy (2021) · cites this paper as [392]
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Cites
Global Cancer Statistics, 2002
Parkin, D. M., Bray, F., Ferlay, J., & Pisani, P. (2005) · CA A Cancer Journal for Clinicians · doi:10.3322/canjclin.55.2.74 · Cited by 18,573 · see citing works
The Consensus Coding Sequences of Human Breast and Colorectal Cancers
Sjöblom, T., Jones, S., Wood, L. D., Parsons, D. W., Lin, J., Barber, T. D., Mandelker, D. L., Leary, R. J., Ptak, J., Silliman, N., et al. (2006) · Science · doi:10.1126/science.1133427 · Cited by 3,161 · see citing works
TGFβ Signaling in Growth Control, Cancer, and Heritable Disorders
Massagué, J., Blain, S. W., & Lo, R. S. (2000) · Cell · doi:10.1016/s0092-8674(00)00121-5 · Cited by 2,386 · see citing works
Inactivation of the Type II TGF-β Receptor in Colon Cancer Cells with Microsatellite Instability
Markowitz, S. D., Wang, J., Myeroff, L. L., Parsons, R. E., Sun, L., Lutterbaugh, J., Fan, R. S., Zborowska, E., Kinzler, K. W., Vogelstein, B., et al. (1995) · Science · doi:10.1126/science.7761852 · Cited by 2,267 · see citing works
Cytostatic and apoptotic actions of TGF-β in homeostasis and cancer
Siegel, P. M., & Massagué, J. (2003) · Nature reviews. Cancer · doi:10.1038/nrc1208 · Cited by 1,600 · see citing works
Genetic analysis of genome-wide variation in human gene expression
Morley, M. P., Molony, C. M., Weber, T. M., Devlin, J. L., Ewens, K. G., Spielman, R. S., & Cheung, V. G. (2004) · Nature · doi:10.1038/nature02797 · Cited by 1,207 · see citing works
Population genomics of human gene expression
Stranger, B. E., Nica, A. C., Forrest, M. S., Dimas, A. S., Bird, C., Beazley, C., Ingle, C., Dunning, M., Flicek, P., Koller, D., et al. (2007) · Nature Genetics · doi:10.1038/ng2142 · Cited by 1,132 · see citing works
Massagué, J., & Gomis, R. R. (2006) · FEBS Letters · doi:10.1016/j.febslet.2006.04.033 · Cited by 719 · see citing works
Smad3 Mutant Mice Develop Metastatic Colorectal Cancer
Zhu, Y., Richardson, J. A., Parada, L. F., & Graff, J. M. (1998) · Cell · doi:10.1016/s0092-8674(00)81730-4 · Cited by 671 · see citing works
Genetic predisposition to colorectal cancer
de la Chapelle, A. (2004) · Nature reviews. Cancer · doi:10.1038/nrc1453 · Cited by 660 · see citing works
Lower Cancer Incidence in Amsterdam-I Criteria Families Without Mismatch Repair Deficiency
Lindor, N. M., Rabe, K. G., Petersen, G. M., Haile, R. W., Casey, G., Baron, J. A., Gallinger, S., Bapat, B. V., Aronson, M. D., Hopper, J. L., et al. (2005) · JAMA · doi:10.1001/jama.293.16.1979 · Cited by 542 · see citing works
Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes
Göring, H. H. H., Curran, J. E., Johnson, M. P., Dyer, T. D., Charlesworth, J., Cole, S. A., Jowett, J. B. M., Abraham, L. J., Rainwater, D. L., Comuzzie, A. G., et al. (2007) · Nature Genetics · doi:10.1038/ng2119 · Cited by 503 · see citing works
Bierie, B., & Moses, H. (2005) · Cytokine & Growth Factor Reviews · doi:10.1016/j.cytogfr.2005.09.006 · Cited by 476 · see citing works
Downregulation of Death-Associated Protein Kinase 1 (DAPK1) in Chronic Lymphocytic Leukemia
Raval, A., Tanner, S. M., Byrd, J. C., Angerman, E. B., Perko, J. D., Chen, S., Hackanson, B. W., Grever, M. R., Lucas, D. M., Matkovic, J. J., et al. (2007) · Cell · doi:10.1016/j.cell.2007.03.043 · Cited by 372 · see citing works
Self-citationLiu, X., Sun, Y., Constantinescu, S. N., Karam, E., Weinberg, R. A., & Lodish, H. F. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.20.10669 · Cited by 356 · see citing works
Small changes in expression affect predisposition to tumorigenesis
Yan, H., Dobbie, Z., Gruber, S. B., Markowitz, S. D., Romans, K., Giardiello, F. M., Kinzler, K. W., & Vogelstein, B. (2001) · Nature Genetics · doi:10.1038/ng799 · Cited by 268 · see citing works
TGF-β signaling alterations and susceptibility to colorectal cancer
Xu, Y., & Pasche, B. (2007) · Human Molecular Genetics · doi:10.1093/hmg/ddl486 · Cited by 265 · see citing works
Self-citationTbetaR-I(6A) is a candidate tumor susceptibility allele.
Pasche, B., Kolachana, P., Nafa, K., Satagopan, J. M., Chen, Y., Lo, R. S., Brener, D., Yang, D. D., Kirstein, L., Oddoux, C., et al. (1999) · PubMed · Cited by 163 · see citing works
Self-citationReversible Smad-Dependent Signaling between Tumor Suppression and Oncogenesis
Sekimoto, G., Matsuzaki, K., Yoshida, K., et al. (2007) · Cancer Research · doi:10.1158/0008-5472.can-06-4629 · Cited by 135 · see citing works
A subset of familial colorectal neoplasia kindreds linked to chromosome 9q22.2-31.2
Wiesner, G. L., Daley, D., Lewis, S., Ticknor, C. M., Platzer, P., Lutterbaugh, J., MacMillen, M., Baliner, B., Willis, J. E., Elston, R. C., et al. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2132286100 · Cited by 118 · see citing works
Pasche, B., Luo, Y., Rao, P. H., Nimer, S. D., Dmitrovsky, E., Caron, P., Luzzatto, L., Offit, K., Cordón-Cardó, C., Renault, B., et al. (1998) · PubMed · Cited by 96 · see citing works
Self-citationSomatic Acquisition and Signaling of TGFBR1 *6A in Cancer
Pasche, B. (2005) · JAMA · doi:10.1001/jama.294.13.1634 · Cited by 93 · see citing works
Self-citationSmad3 Deficiency Promotes Tumorigenesis in the Distal Colon of ApcMin/+ Mice
Sodir, N. M., Chen, X., Park, R. J.-H., et al. (2006) · Cancer Research · doi:10.1158/0008-5472.can-06-1437 · Cited by 90 · see citing works
<i>TGFBR1</i>*6A and Cancer: A Meta-Analysis of 12 Case-Control Studies
Pasche, B., Kaklamani, V., Hou, N., Young, T., Rademaker, A., Peterlongo, P., Ellis, N., Offit, K., Caldes, T., Reiss, M., et al. (2004) · Journal of Clinical Oncology · doi:10.1200/jco.2004.99.271 · Cited by 88 · see citing works
Self-citationA Very Private TGF-β Receptor Embrace
Massagué, J. (2008) · Molecular Cell · doi:10.1016/j.molcel.2008.01.006 · Cited by 80 · see citing works
Allelic variations in gene expression
Yan, H., & Zhou, W. (2003) · Current Opinion in Oncology · doi:10.1097/00001622-200401000-00008 · Cited by 57 · see citing works
Evidence of Linkage to Chromosome 9q22.33 in Colorectal Cancer Kindreds from the United Kingdom
Kemp, Z., Carvajal‐Carmona, L. G., Barclay, E., Gorman, M., Martin, L. M., Wood, W., Rowan, A., Donohue, C., Spain, S. L., Jaeger, E., et al. (2006) · Cancer Research · doi:10.1158/0008-5472.can-05-4074 · Cited by 55 · see citing works
Skoglund, J., Djureinovic, T., Zhou, X.-L., et al. (2006) · Journal of Medical Genetics · doi:10.1136/jmg.2005.033928 · Cited by 54 · see citing works
TGFBR1☆6A May Contribute to Hereditary Colorectal Cancer
Bian, Y., Caldés, T., Wijnen, J., Franken, P., Vasen, H. F. A., Kaklamani, V., Nafa, K., Peterlongo, P., Ellis, N. A., Baron, J. A., et al. (2005) · Journal of Clinical Oncology · doi:10.1200/jco.2005.00.281 · Cited by 45 · see citing works
Self-citationLack of an Association between the TGFBR1*6A Variant and Colorectal Cancer Risk
Skoglund, J., Song, B., Dalén, J., et al. (2007) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-06-2865 · Cited by 31 · see citing works
Flagged first, then by citations
Research works printed but not linked: 3
- [6]Pasche B Cancer Res 1998 58 2727 9661882
- [13]Liu X Proc. Natl. Acad. Sci. U.S.A 1997 94 10669
- [18]Pasche B Cancer Res 1999 59 5678 10582683
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Li, X., & Wang, C.-Y. (2021) · International Journal of Oral Science · doi:10.1038/s41368-021-00146-0 · Cited by 605 · see citing works
Dodagatta-Marri, E., Meyer, D. S., Reeves, M. Q., Paniagua, R., To, M. D., Binnewies, M., Broz, M. L., Mori, H., Wu, D., Adoumie, M., et al. (2019) · Journal for ImmunoTherapy of Cancer · doi:10.1186/s40425-018-0493-9 · Cited by 177 · see citing works
- Authors
- Valle, L., Serena-Acedo, T., Liyanarachchi, S., Hampel, H., Comeras, I., Li, Z., Zeng, Q., Zhang, H.-T., Pennison, M. J., Sadim, M., Pasche, B., Tanner, S. M., & de la Chapelle, A.
- Affiliations
- Northwestern University (US)
- Human Cancer Genetics Program, Comprehensive Cancer Center, The Ohio State University, Columbus, OH 43210, USA.
- Corresponding author
- Pasche, Boris
- Tanner, Stephan M.
- Venue
- Science
- Published
- 2008-09-05
- Volume
- 321
- Issue
- 5894
- Pages
- 1361-1365
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC2672914
- OpenAlex
- W2164398315
- Cited by
- 141
- References
- 30
- Citations by year
- 2026: 1 · 2024: 1 · 2023: 3 · 2022: 4 · 2021: 8 · 2020: 8 · 2019: 5 · 2018: 6 · 2017: 5 · 2016: 8 · 2015: 2 · 2014: 10 · 2013: 12 · 2012: 10
- FWCI
- 13.71
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- Funders
- National Institutes of Health (5r01ca112520-08)
- National Cancer Institute (CA112520, CA108741, R01CA108741, CA67941, CA16058, R01-CA112520, P30CA012197, P30CA016058)
- Topics
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic Associations and Epidemiology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › TGF-β signaling in diseases
- Keywords
- colorectal cancer, allele-specific expression, TGFBR1, germline mutations, genetic susceptibility, Smad signaling, TGF-beta signaling, haplotypes, cancer risk, family segregation, Caucasian population
- MeSH terms
- Receptor, Transforming Growth Factor-beta Type I, Adult, Aged, Aged, 80 and over, Alleles, Cell Line, Female, Haplotypes, Heterozygote, Humans, Male, Middle Aged, Risk Factors, Colorectal Neoplasms, Signal Transduction, Linkage Disequilibrium, Gene Expression, Transforming Growth Factor beta, Protein Serine-Threonine Kinases, Receptors, Transforming Growth Factor beta, Quantitative Trait, Heritable, Genetic Predisposition to Disease, 3' Untranslated Regions, Polymorphism, Single Nucleotide, Smad3 Protein
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