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The Paf1 complex positively regulates enhancer activity in mouse embryonic stem cells

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Identification of a Potential Regulatory Variant for Colorectal Cancer Risk Mapping to 3p21.31 in Chinese Population

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A Pretraining-Retraining Strategy of Deep Learning Improves Cell-Specific Enhancer Predictions

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Comprehensive Mapping of Key Regulatory Networks that Drive Oncogene Expression

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Influence of genetic polymorphism on transcriptional enhancer activity in the malaria vector Anopheles coluzzii

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Novel Approaches for Identifying the Molecular Background of Schizophrenia

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Polygenicity in Psychiatry—Like It or Not, We Have to Understand It

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A signature of Neanderthal introgression on molecular mechanisms of environmental responses

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Epromoters are new players in the regulatory landscape with potential pleiotropic roles

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Craniofacial developmental biology in the single-cell era

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DNA methylation-environment interactions in the human genome

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A genome-wide screen identifies silencers with distinct chromatin properties and mechanisms of repression

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The transcription factor Traffic jam orchestrates the somatic piRNA pathway in Drosophila ovaries

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Integrated omics approaches to characterize a nuclear receptor corepressor-associated histone deacetylase in mouse skeletal muscle

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A Point of Inflection and Reflection on Systems Chemical Biology

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Filtering the Junk: Assigning Function to the Mosquito Non-Coding Genome

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Frontiers and techniques in plant gene regulation

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Recent advances in functional assays of transcriptional enhancers

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Core promoters across the genome

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Genome-wide annotation of gene regulatory elements linked to cell fitnessPreprint

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MPRAbase a Massively Parallel Reporter Assay databasePreprint

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Transcriptional precision in photoreceptor development and diseases – Lessons from 25 years of CRX research

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Genome organization and botanical diversity

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Uncovering the whole genome silencers of human cells via Ss-STARR-seq

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Loss of 9p21 Regulatory Hub Promotes Kidney Cancer Progression by Upregulating HOXB13

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The two waves in single-cell 3D genomics

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Decoding transcriptional enhancers: Evolving from annotation to functional interpretation

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Genome-wide identification of enhancer elements in the placenta

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Cloning and functional identification of a Chilo suppressalis‐inducible promoter of rice gene, OsHPL2

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Trans MPRA: A framework for assaying the role of many trans -acting factors at many enhancersPreprint

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The Genetics of Coronary Artery Disease: A Vascular Perspective

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Strategies for dissecting the complexity of neurodevelopmental disorders

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Methylation-directed regulatory networks determine enhancing and silencing of mutation disease driver genes and explain inter-patient expression variation

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Nucleoporin Elys attaches peripheral chromatin to the nuclear pores in interphase nuclei

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The Drosophila MLR COMPASS complex is essential for programming cis-regulatory information and maintaining epigenetic memory during development

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Trait-associated noncoding variant regions affect TBX3 regulation and cardiac conduction

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Decoding transcriptional states in cancer

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Conserved Noncoding Elements Influence the Transposable Element Landscape in Drosophila

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The non-coding genome in genetic brain disorders: new targets for therapy?

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Multiplex profiling of developmental enhancers with quantitative, single-cell expression reportersPreprint

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Gene regulatory activity associated with polycystic ovary syndrome revealed DENND1A-dependent testosterone production

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From variants to mechanisms: Neurogenomics in the post-GWAS era

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Sea-ATI unravels novel vocabularies of plant active cistrome

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Identification of Highly Repetitive Enhancers with Long-range Regulation Potential in Barley via STARR-seq

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Hidden secrets of the cancer genome: unlocking the impact of non-coding mutations in gene regulatory elements

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Active enhancers: recent research advances and insights into disease

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Identification of a robust promoter in mouse and human hepatocytes by in vivo biopanning of a barcoded AAV library

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Multiplexed profiling of transcriptional regulators in plant cells

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Identification of a Potential Regulatory Variant for Colorectal Cancer Risk Mapping to Chromosome 5q31.1: A Post-GWAS Study

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Robust Normalization of Luciferase Reporter Data

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Epigenome rewiring in human pluripotent stem cells

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ZipHiC: a novel Bayesian framework to identify enriched interactions and experimental biases in Hi-C data

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Systematic identification and characterization of repressive domains in Drosophila transcription factors

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Decoding pluripotency: Genetic screens to interrogate the acquisition, maintenance, and exit of pluripotency

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Recently Evolved Enhancers Emerge with High Interindividual Variability and Less Frequently Associate with Disease

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Defining Essential Enhancers for Pluripotent Stem Cells Using a Features-Oriented CRISPR-Cas9 Screen

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A Transcription Start Site Map in Human Pancreatic Islets Reveals Functional Regulatory Signatures

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Parallel Reporter Assays Identify Altered Regulatory Role of rs684232 in Leading to Prostate Cancer Predisposition

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Modeling common and rare genetic risk factors of neuropsychiatric disorders in human induced pluripotent stem cells

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Glucocorticoids unmask silent non-coding genetic risk variants for common diseases

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DNA sequencing methods in human genetics and disease research

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A systematic evaluation of the design, orientation, and sequence context dependencies of massively parallel reporter assaysPreprint

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STARRPeaker: Uniform processing and accurate identification of STARR-seq active regionsPreprint

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3D chromatin structures precede genome activation in Drosophila embryogenesis

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Integrative approaches to study enhancer–promoter communication

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Cis-Regulatory Elements in Mammals

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A Ctnnb1 enhancer transcriptionally regulates Wnt signaling dosage to balance homeostasis and tumorigenesis of intestinal epithelia

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Genomic annotation of disease-associated variants reveals shared functional contexts

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The Role of Nucleosomes in Epigenetic Gene Regulation

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Early Xenopus gene regulatory programs, chromatin states, and the role of maternal transcription factors

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Functional annotation of breast cancer risk loci: current progress and future directions

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Multi-layered transcriptional control of cranial neural crest development

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Strategies for activity analysis of single nucleotide polymorphisms associated with human diseases

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Mini-review: Gene regulatory network benefits from three-dimensional chromatin conformation and structural biology

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Breaking enhancers to gain insights into developmental defects

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