Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

Spang, Anja, Caceres, Eva F., Ettema, Thijs J. G.·2017·Science

Cited by (357)

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  4. Towards a systematic understanding of differences between archaeal and bacterial diversity
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  8. Reply to ‘Molecular clocks provide little information to date methanogenic Archaea’
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  9. The Report of Marine Life Genomic Research
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  11. Chemical evolution of nucleic acids to sustain a life of Archaea
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  12. Response of soil bacterial community structure and function under two salt-tolerant plants in a coastal saline soil area of eastern Hebei province of China
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  14. Catalytic linkage between caspase activity and proteostasis in Archaea
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  15. The dark side of the ribosome life cycle
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  16. Phylogenomics and ancestral reconstruction of Korarchaeota reveals genomic adaptation to habitat switching
    Guillaume Tahon, Stephan Köstlbacher, Erik A. Pelve, Brett J. Baker, Jimmy H. W. Saw, Laura Eme, Daniel Tamarit, Max Emil Schön, Thijs J. G. Ettema · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  17. Genome-resolved metaproteogenomic and nanosolid characterization of an inactive vent chimney densely colonized by enigmatic DPANN archaea
    Hinako Takamiya, Mariko Kouduka, Shingo Kato, Hiroki Suga, Masaki Oura, Tadashi Yokoyama, Michio Suzuki, Masaru Mori, Akio Kanai, Yohey Suzuki · 2024 · The ISME Journal
  18. Ecological diversity and metabolic strategies of widespread Marinisomatota in global oceans
    Shizheng Xiang, Jianyang Li, Zhen Chen, Ruolin Cheng, Liping Wang, Libo Yu, Guangshan Wei, Xiangyu Guan, Brandon R. Briggs, Gary M. King et al. · 2025 · Marine Life Science & Technology
  19. Comparative Genomic Insights into Chemoreceptor Diversity and Habitat Adaptation of Archaea
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  20. Discovery of a novel bacterial class with the capacity to drive sulfur cycling and microbiome structure in a paleo-ocean analog
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  21. N-glycosylation in Archaea – Expanding the process, components and roles of a universal post-translational modification
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  22. Traces of a Primitive RNA Ring in Current Genomes
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  23. Community structure of microbes in natural environments
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  24. Archaea, from obscurity to superhero microbes: 40 years of surprises and critical biological insights
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  25. Diversity and biogeography of Woesearchaeota: A comprehensive analysis of multi-environment data
    Jing Xiao, Yu Zhang, Wanning Chen, Yanbing Xu, Rui Zhao, Liwen Tao, Yuanqi Wu, Yida Zhang, Xiang Xiao, Ruixin Zhu · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  26. Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaea
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  27. Editorial: Ecology, Metabolism and Evolution of Archaea-Perspectives From Proceedings of the International Workshop on Geo-Omics of Archaea
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  30. Putative plastic degrading communities within New Zealand’s geothermal environments
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  31. Microbial diversity in marine sediments of two hydrocarbon reservoir areas in the eastern Atlantic Ocean
    Xueqin Wei, L Liu, X Chen, G Jin, L Liu, M Cai, Z Qiu · 2022 · Aquatic Microbial Ecology
  32. A translation proofreader of archaeal origin imparts multi-aldehyde stress tolerance to land plants
    Pradeep Kumar, Ankit Roy, Shivapura Jagadeesha Mukul, Avinash Kumar Singh, Dipesh Kumar Singh, Aswan Nalli, Pujaita Banerjee, Kandhalu Sagadevan Dinesh Babu, Bakthisaran Raman, Shobha P. Kruparani et al. · 2023 · eLife
  33. The physical-chemical environment of microbes
    David L. Kirchman · 2018 · Oxford University Press eBooks
  34. Processes in Anoxic Environments
    David L. Kirchman, Ashley L. Shade · 2018 · Oxford University Press eBooks
  35. Elements, biochemicals, and structures of microbes
    David L. Kirchman · 2018 · Oxford University Press eBooks
  36. 10 Years of Extreme Microbiology: An Interim Reflection and Future Prospects
    Andreas Teske · 2020 · Frontiers in Microbiology
  37. Chemical Evolution of Nucleic Acids to Sustain a Life of Archaea
    Paulchamy Chellapandi, Ragothaman Prathiviraj · 2022 · SSRN Electronic Journal
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    Yi Liu, Min Yu, Xing Chen, Lingman Ran, Xiao‐Hua Zhang · 2025 · Environmental Microbiome
  40. Phosphorylation of the α subunit inhibits proteasome assembly and regulates cell cycle in an archaeon
    Ya Wu, Qi Gan, Kanghui Ning, Ran Zhang, Pengju Wu, Xu Feng, Qunxin She, Jinfeng Ni, Yulong Shen, Qihong Huang · 2026 · Current Biology
  41. Microbial decomposer diversity and metabolic function during the decomposition of brine shrimp carcasses in a saline lake
    Lei Gao, Bao‐Zhu Fang, Jian Yang, Zheng‐Han Lian, Chen Dong-ying, Osama Abdalla Abdelshafy Mohamad, Qing-Yu Xu, Yong-Hong Liu, Dildar Wu, Yang Yuan et al. · 2026 · Microbiome
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    Qitao Hu, T. C. Huang, Aili Zhu, Angélica Anglés, Osman Abdelghany, Alaa Ahmed, David C. Fernández‐Remolar · 2025 · International Journal of Molecular Sciences
  44. Microbial growth, biomass production, and controls
    David L. Kirchman · 2018 · Oxford University Press eBooks
  45. Acidophile
    A. Stolz · 2017 · Springer eBooks
  46. Metagenomic insights into the metabolism and ecologic functions of the widespread DPANN archaea from deep-sea hydrothermal vents
    Ruining Cai, Jing Zhang, Rui Liu, Chaomin Sun · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  47. Heterotrophic Thaumarchaeota with ultrasmall genomes are widespread in the ocean
    Frank O. Aylward, Alyson E. Santoro · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  48. Genome-resolved meta-omics unveils rock-hosted lifestyle of enigmatic DPANN archaea
    Hinako Takamiya, Mariko Kouduka, Shingo Kato, Hiroki Suga, Masaki Oura, Tadashi Yokoyama, Michio Suzuki, Masaru Mori, Akio Kanai, Yohey Suzuki · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
  49. Extracellular electron transfer drives efficient H 2 -independent methylotrophic methanogenesis by Methanomassiliicoccus, a seventh order methanogen
    Lingyan Li, Xuping Tian, Xuemeng Wang, Chuan Chen, Qi Zhou, Lei Qi, Jie Li, Kai Xue, Fangjie J. Zhao, Yanfen Wang et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
  50. Microbial Dark Matter: Uncultured Microbes and Their Ecological Roles
    Saman A. Ahmad · 2025 · Preprints.org
  51. Archaeal RNA processing and regulation: expanding the functional landscape
    Yueting Liang, Wen Qi, Xiuzhu Dong, Jie Li · 2025 · Microbiology and Molecular Biology Reviews
  52. Molecular transcription of microbial enzymes: Insights into gene regulation and function
    Nagla Gasmelseed · 2025 · Elsevier eBooks
  53. Cran1, member of a new class of OLD family ATPases, functions in cell cycle progression in an archaeon
    Yunfeng Yang, Shikuan Liang, Junfeng Liu, Xiaofei Fu, Pengju Wu, Haodun Li, Jinfeng Ni, Qunxin She, Mart Krupovìč, Yulong Shen · 2025 · EMBO Reports
  54. Cultivation in a bottom-up manner: a new way to explore environmental microbiome
    Yi Su, Shanquan Wang · 2026 · ENGINEERING Environment
  55. Methanonatronarchaeia are deep-branching ancestrally methanogenic archaea distant from Halobacteria
    Brittany A. Baker, Romain B Leroy, Purificación López‐García, Laura Eme, David Moreira · 2026 · ISME Communications
  56. Diversity of Archaea
    Ayten Kimiran, Merve Mücahide Çağ, Nihal Doğruöz Güngör · 2026 · Progress in molecular and subcellular biology
  57. Succession of pit mud archaeal communities and metabolic networks: the hidden key to the unique flavor of strong-flavor Baijiu
    Qilin Huang, Y Liu, Lei Tian, Xianping Qiu, Yanzhong Li, Yu Li, Y Liu, Shiyu Yang, Tongwei Guan · 2026 · Applied and Environmental Microbiology
  58. Predation and Protists
    David L. Kirchman, Ashley L. Shade · 2018 · Oxford University Press eBooks
  59. Introduction
    David L. Kirchman · 2018 · Oxford University Press eBooks
  60. The ecology of viruses
    David L. Kirchman · 2018 · Oxford University Press eBooks
  61. Genomes and meta-omics for microbes
    David L. Kirchman · 2018 · Oxford University Press eBooks
  62. 基于基因组信息指导的古菌培养新策略
    Yinzhao Wang, Yoichi Kamagata, 猛 李, 菲菲 韩, 风平 王, 湘 肖 · 2021 · SCIENTIA SINICA Terrae
  63. Archaeal communities at gas-venting shallow basins in the northern Gulf of California (Wagner and Consag basins)
    Fernando Pérez-Villatoro, Sonia Dávila‐Ramos, Katy Juárez, Rosa María Prol‐Ledesma · 2023 · Boletín de la Sociedad Geológica Mexicana
  64. Lokiarchaeon exhibits homoacetogenesis
    William D. Orsi, Aurèle Vuillemin, Paula C. Rodriguez, Ömer K. Coskun, Gonzalo V. Gomez‐Saez, Gaute Lavik, Volker Morholz, Timothy G. Ferdelman · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
  65. Microbial Interactions in Anaerobic Wastewater Treatment
    Yongfeng Wang, Qiang He · 2019 · Encyclopedia of Water
  66. Undinarchaeota illuminate the evolution of DPANN archaea
    Nina Dombrowski, T. Williams, Jiarui Sun, B. Woodcroft, Jun-Hoe Lee, M. Bui, C. Rinke, A. Spang · 2020 · bioRxiv
  67. Early acquisition of conserved, lineage-specific proteins currently lacking functional predictions were central to the rise and diversification of archaea
    Raphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  68. DPANN, Archaea
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  69. Genomic landscape of antiviral defense systems in prokaryotes and phages
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  70. The nitrogen cycle
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  71. Symbioses and Microbes
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  72. Biogeochemical and phylogenetic signals of Proterozoic and Phanerozoic microbial metabolisms
    Danielle S. Gruen · 2018
  73. Syntrophic acetate oxidation in the anaerobic digestion of nitrogen-rich wastes : from microbial interactions to process optimization
    Josep Ruiz Sánchez · 2018
  74. The ribbon-helix-helix domain proteins CdrS and CdrL regulate cell division in archaea
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  75. An extension of Shannon’s entropy to explain taxa diversity and human diseases
    Farzin Kamari, Sina Dadmand · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
  76. Prokaryotic Systematics: Theoretical Overview in Post‐Genomic Era
    D. İpek Kurtböke · 2021 · Encyclopedia of Life Sciences
  77. Diversity of thermophilic archaea and their biotechnological uses
    Gülsu ÖZKAN, Gamze Başbülbül · 2021 · Biological Diversity and Conservation
  78. Archaea as components of forest microbiome
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  79. Factors influencing Euryarchaeal gut methanogens distribution in dairy cattle in smallholding farms
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  80. Perfil transcricional da haloarqueia Halobacterium salinarum NRC-1 sob estresse osmótico
    Evelyn Ayumi Onga · 2021
  81. Diversidade de Archaea em Diferentes Ecossistemas da Antártica
    Juliana Correa Neiva Ferreira · 2021 · Digital Library of Theses and Dissertations (Universidade de São Paulo)
  82. Faculty Opinions recommendation of Group I introns are widespread in archaea.
    Scott K. Silverman · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  83. Eukaryotes Appearing
    Shin‐ichi Yokobori, Ryutaro Furukawa · 2019 · Springer eBooks
  84. Faculty Opinions recommendation of Group I introns are widespread in archaea.
    Quentin Vicens · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
  85. Review: Benthic Archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone
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  86. Einleitung
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  87. DPANN, Archaea
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  88. Diversidade e distribuição de procariotos na zona mesopelágica da Bacia de Santos - Brasil
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  89. Decoding the organohalide-respiration potential of Aarhus bay sediments
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  90. Preface
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  91. Copyright Page
    2018 · Oxford University Press eBooks
  92. Methylotrophic methanogenesis in the Archaeoglobi revealed by cultivation of Ca. Methanoglobus hypatiae from a Yellowstone hot spring
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  93. A translation proofreader of archaeal origin imparts multialdehyde stress tolerance to land plants
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  94. Domain Archaea: Structural and Phylogenetic Relations With Domain Eukarya
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  96. Globally distributed marine Gemmatimonadota have unique genomic potentials
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  98. Reviewer #1 (Public Review): A translation proofreader of archaeal origin imparts multialdehyde stress tolerance to land plants
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  99. eLife Assessment: A translation proofreader of archaeal origin imparts multialdehyde stress tolerance to land plants
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