Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life
Spang, Anja, Caceres, Eva F., Ettema, Thijs J. G.·2017·Science
Cited by (357)
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- In Vivo RNA Chemical Footprinting Analysis in ArchaeaRobert Knüppel, Martin Fenk, Michael Jüttner, Sébastien Ferreira-Cerca · 2019 · Methods in molecular biology
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- Chemical evolution of nucleic acids to sustain a life of ArchaeaPaulchamy Chellapandi, Ragothaman Prathiviraj · 2022 · Ecological Genetics and Genomics
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- The dark side of the ribosome life cycleSébastien Ferreira-Cerca · 2022 · RNA Biology
- Phylogenomics and ancestral reconstruction of Korarchaeota reveals genomic adaptation to habitat switchingGuillaume Tahon, Stephan Köstlbacher, Erik A. Pelve, Brett J. Baker, Jimmy H. W. Saw, Laura Eme, Daniel Tamarit, Max Emil Schön, Thijs J. G. Ettema · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Genome-resolved metaproteogenomic and nanosolid characterization of an inactive vent chimney densely colonized by enigmatic DPANN archaeaHinako Takamiya, Mariko Kouduka, Shingo Kato, Hiroki Suga, Masaki Oura, Tadashi Yokoyama, Michio Suzuki, Masaru Mori, Akio Kanai, Yohey Suzuki · 2024 · The ISME Journal
- Ecological diversity and metabolic strategies of widespread Marinisomatota in global oceansShizheng Xiang, Jianyang Li, Zhen Chen, Ruolin Cheng, Liping Wang, Libo Yu, Guangshan Wei, Xiangyu Guan, Brandon R. Briggs, Gary M. King et al. · 2025 · Marine Life Science & Technology
- Comparative Genomic Insights into Chemoreceptor Diversity and Habitat Adaptation of ArchaeaGuihong Cha, Yugeng Liu, Qing Yuan Yang, Liping Bai, Lei Cheng, Wei Fan · 2022 · Applied and Environmental Microbiology
- Discovery of a novel bacterial class with the capacity to drive sulfur cycling and microbiome structure in a paleo-ocean analogAdrien Vigneron, Warwick F. Vincent, Connie Lovejoy C · 2023 · ISME Communications
- N-glycosylation in Archaea – Expanding the process, components and roles of a universal post-translational modificationZlata Vershinin, Marianna Zaretsky, Jerry Eichler · 2024 · BBA Advances
- Traces of a Primitive RNA Ring in Current GenomesJacques Demongeot · 2025 · Biology
- Community structure of microbes in natural environmentsDavid L. Kirchman · 2018 · Oxford University Press eBooks
- Archaea, from obscurity to superhero microbes: 40 years of surprises and critical biological insightsNicholas P. Robinson · 2018 · Emerging Topics in Life Sciences
- Diversity and biogeography of Woesearchaeota: A comprehensive analysis of multi-environment dataJing Xiao, Yu Zhang, Wanning Chen, Yanbing Xu, Rui Zhao, Liwen Tao, Yuanqi Wu, Yida Zhang, Xiang Xiao, Ruixin Zhu · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Comparative genomics reveals electron transfer and syntrophic mechanisms differentiating methanotrophic and methanogenic archaeaGrayson L. Chadwick, Connor T. Skennerton, Rafael Laso-Pérez, Andy O Leu, Daan R. Speth, Hang Yu, Connor Morgan-Lang, Roland Hatzenpichler, Danielle Goudeau, Rex R. Malmstrom et al. · 2021 · bioRxiv (Cold Spring Harbor Laboratory)
- Editorial: Ecology, Metabolism and Evolution of Archaea-Perspectives From Proceedings of the International Workshop on Geo-Omics of ArchaeaBrian P. Hedlund, Chuanlun Zhang, Fengping Wang, Christian Rinke, William F. Martin · 2022 · Frontiers in Microbiology
- Animals have expanded the evolutionary legacy of unicellular ancestors in blood cellsYosuke Nagahata, Yuji Nishimura, Ryota Kaitani, J. Leong, I. Oda-Ishii, Hisanori Kohtsuka, Shinya Abe, Tasuku Ishida, Marina Carmona-Rivas, Sebastian R. R. Najle et al. · 2026 · Proceedings of the National Academy of Sciences of the United States of America
- Dissolved Microbial Methane in the Deep Crystalline Crust Fluids–Current Knowledge and Future ProspectsF. van Dam, Riikka Kietäväinen, H. Drake · 2022 · Geofluids
- Putative plastic degrading communities within New Zealand’s geothermal environmentsN. Pavlov, Jessica A. Wallbank, S.M. Hermans, Joanne M. Kingsbury, Olga Pantos, Gavin Lear · 2025 · Total Environment Microbiology
- Microbial diversity in marine sediments of two hydrocarbon reservoir areas in the eastern Atlantic OceanXueqin Wei, L Liu, X Chen, G Jin, L Liu, M Cai, Z Qiu · 2022 · Aquatic Microbial Ecology
- A translation proofreader of archaeal origin imparts multi-aldehyde stress tolerance to land plantsPradeep Kumar, Ankit Roy, Shivapura Jagadeesha Mukul, Avinash Kumar Singh, Dipesh Kumar Singh, Aswan Nalli, Pujaita Banerjee, Kandhalu Sagadevan Dinesh Babu, Bakthisaran Raman, Shobha P. Kruparani et al. · 2023 · eLife
- The physical-chemical environment of microbesDavid L. Kirchman · 2018 · Oxford University Press eBooks
- Processes in Anoxic EnvironmentsDavid L. Kirchman, Ashley L. Shade · 2018 · Oxford University Press eBooks
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- 10 Years of Extreme Microbiology: An Interim Reflection and Future ProspectsAndreas Teske · 2020 · Frontiers in Microbiology
- Chemical Evolution of Nucleic Acids to Sustain a Life of ArchaeaPaulchamy Chellapandi, Ragothaman Prathiviraj · 2022 · SSRN Electronic Journal
- Impacts of plant root traits and microbial functional attributes on soil respiration components in the desert-oasis ecotoneJinlong Wang, Guanghui Lv, Jianjun Yang, Xuemin He, Hengfang Wang, Wenjing Li · 2025 · Frontiers in Plant Science
- Diversity, metabolic potential and global distribution of the anaerobic fermentative bacteria Phylum Candidatus CloacimonadotaYi Liu, Min Yu, Xing Chen, Lingman Ran, Xiao‐Hua Zhang · 2025 · Environmental Microbiome
- Phosphorylation of the α subunit inhibits proteasome assembly and regulates cell cycle in an archaeonYa Wu, Qi Gan, Kanghui Ning, Ran Zhang, Pengju Wu, Xu Feng, Qunxin She, Jinfeng Ni, Yulong Shen, Qihong Huang · 2026 · Current Biology
- Microbial decomposer diversity and metabolic function during the decomposition of brine shrimp carcasses in a saline lakeLei Gao, Bao‐Zhu Fang, Jian Yang, Zheng‐Han Lian, Chen Dong-ying, Osama Abdalla Abdelshafy Mohamad, Qing-Yu Xu, Yong-Hong Liu, Dildar Wu, Yang Yuan et al. · 2026 · Microbiome
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- Comparing Protein Stability in Modern and Ancient Sabkha Environments: Implications for Molecular Remnants on Ancient MarsQitao Hu, T. C. Huang, Aili Zhu, Angélica Anglés, Osman Abdelghany, Alaa Ahmed, David C. Fernández‐Remolar · 2025 · International Journal of Molecular Sciences
- Microbial growth, biomass production, and controlsDavid L. Kirchman · 2018 · Oxford University Press eBooks
- AcidophileA. Stolz · 2017 · Springer eBooks
- Metagenomic insights into the metabolism and ecologic functions of the widespread DPANN archaea from deep-sea hydrothermal ventsRuining Cai, Jing Zhang, Rui Liu, Chaomin Sun · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Heterotrophic Thaumarchaeota with ultrasmall genomes are widespread in the oceanFrank O. Aylward, Alyson E. Santoro · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Genome-resolved meta-omics unveils rock-hosted lifestyle of enigmatic DPANN archaeaHinako Takamiya, Mariko Kouduka, Shingo Kato, Hiroki Suga, Masaki Oura, Tadashi Yokoyama, Michio Suzuki, Masaru Mori, Akio Kanai, Yohey Suzuki · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Extracellular electron transfer drives efficient H 2 -independent methylotrophic methanogenesis by Methanomassiliicoccus, a seventh order methanogenLingyan Li, Xuping Tian, Xuemeng Wang, Chuan Chen, Qi Zhou, Lei Qi, Jie Li, Kai Xue, Fangjie J. Zhao, Yanfen Wang et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Microbial Dark Matter: Uncultured Microbes and Their Ecological RolesSaman A. Ahmad · 2025 · Preprints.org
- Archaeal RNA processing and regulation: expanding the functional landscapeYueting Liang, Wen Qi, Xiuzhu Dong, Jie Li · 2025 · Microbiology and Molecular Biology Reviews
- Molecular transcription of microbial enzymes: Insights into gene regulation and functionNagla Gasmelseed · 2025 · Elsevier eBooks
- Cran1, member of a new class of OLD family ATPases, functions in cell cycle progression in an archaeonYunfeng Yang, Shikuan Liang, Junfeng Liu, Xiaofei Fu, Pengju Wu, Haodun Li, Jinfeng Ni, Qunxin She, Mart Krupovìč, Yulong Shen · 2025 · EMBO Reports
- Cultivation in a bottom-up manner: a new way to explore environmental microbiomeYi Su, Shanquan Wang · 2026 · ENGINEERING Environment
- Methanonatronarchaeia are deep-branching ancestrally methanogenic archaea distant from HalobacteriaBrittany A. Baker, Romain B Leroy, Purificación López‐García, Laura Eme, David Moreira · 2026 · ISME Communications
- Diversity of ArchaeaAyten Kimiran, Merve Mücahide Çağ, Nihal Doğruöz Güngör · 2026 · Progress in molecular and subcellular biology
- Succession of pit mud archaeal communities and metabolic networks: the hidden key to the unique flavor of strong-flavor BaijiuQilin Huang, Y Liu, Lei Tian, Xianping Qiu, Yanzhong Li, Yu Li, Y Liu, Shiyu Yang, Tongwei Guan · 2026 · Applied and Environmental Microbiology
- Predation and ProtistsDavid L. Kirchman, Ashley L. Shade · 2018 · Oxford University Press eBooks
- IntroductionDavid L. Kirchman · 2018 · Oxford University Press eBooks
- The ecology of virusesDavid L. Kirchman · 2018 · Oxford University Press eBooks
- Genomes and meta-omics for microbesDavid L. Kirchman · 2018 · Oxford University Press eBooks
- 基于基因组信息指导的古菌培养新策略Yinzhao Wang, Yoichi Kamagata, 猛 李, 菲菲 韩, 风平 王, 湘 肖 · 2021 · SCIENTIA SINICA Terrae
- Archaeal communities at gas-venting shallow basins in the northern Gulf of California (Wagner and Consag basins)Fernando Pérez-Villatoro, Sonia Dávila‐Ramos, Katy Juárez, Rosa María Prol‐Ledesma · 2023 · Boletín de la Sociedad Geológica Mexicana
- Lokiarchaeon exhibits homoacetogenesisWilliam D. Orsi, Aurèle Vuillemin, Paula C. Rodriguez, Ömer K. Coskun, Gonzalo V. Gomez‐Saez, Gaute Lavik, Volker Morholz, Timothy G. Ferdelman · 2019 · bioRxiv (Cold Spring Harbor Laboratory)
- Microbial Interactions in Anaerobic Wastewater TreatmentYongfeng Wang, Qiang He · 2019 · Encyclopedia of Water
- Undinarchaeota illuminate the evolution of DPANN archaeaNina Dombrowski, T. Williams, Jiarui Sun, B. Woodcroft, Jun-Hoe Lee, M. Bui, C. Rinke, A. Spang · 2020 · bioRxiv
- Early acquisition of conserved, lineage-specific proteins currently lacking functional predictions were central to the rise and diversification of archaeaRaphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- DPANN, ArchaeaRicardo Amils · 2023 · Encyclopedia of Astrobiology
- Genomic landscape of antiviral defense systems in prokaryotes and phagesJinquan Li, Jiazheng Gu, Runyue Xia, Meng Li · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
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- Syntrophic acetate oxidation in the anaerobic digestion of nitrogen-rich wastes : from microbial interactions to process optimizationJosep Ruiz Sánchez · 2018
- The ribbon-helix-helix domain proteins CdrS and CdrL regulate cell division in archaeaCynthia L. Darnell, Jenny Zheng, Sean Wilson, Ryan Matthew Bertoli, Alexandre W. Bisson Filho, Ethan Clark Garner, Amy Schmid · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- An extension of Shannon’s entropy to explain taxa diversity and human diseasesFarzin Kamari, Sina Dadmand · 2020 · bioRxiv (Cold Spring Harbor Laboratory)
- Prokaryotic Systematics: Theoretical Overview in Post‐Genomic EraD. İpek Kurtböke · 2021 · Encyclopedia of Life Sciences
- Diversity of thermophilic archaea and their biotechnological usesGülsu ÖZKAN, Gamze Başbülbül · 2021 · Biological Diversity and Conservation
- Archaea as components of forest microbiomeKim Yrjälä, Eglantina Lopez‐Echartea · 2021 · Elsevier eBooks
- Factors influencing Euryarchaeal gut methanogens distribution in dairy cattle in smallholding farmsDenis K. Ng'etich, Rawlynce Cheruiyot Bett, Charles Karuku Gachuiri, Felix M. Kibegwa · 2021 · East African Journal of Science Technology and Innovation
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- Faculty Opinions recommendation of Group I introns are widespread in archaea.Quentin Vicens · 2018 · Faculty Opinions – Post-Publication Peer Review of the Biomedical Literature
- Review: Benthic Archaea as potential sources of tetraether membrane lipids in sediments across an oxygen minimum zone2017 · Biogeosciences
- EinleitungA. Stolz · 2017 · Springer eBooks
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- Diversidade e distribuição de procariotos na zona mesopelágica da Bacia de Santos - BrasilRebeca Graciela Matheus Lizarraga · 2022
- Decoding the organohalide-respiration potential of Aarhus bay sedimentsChen Zhang · 2023
- Preface2018 · Oxford University Press eBooks
- Copyright Page2018 · Oxford University Press eBooks
- Methylotrophic methanogenesis in the Archaeoglobi revealed by cultivation of Ca. Methanoglobus hypatiae from a Yellowstone hot springMackenzie M. Lynes, Zackary J. Jay, Anthony J. Kohtz, Roland Hatzenpichler · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- A translation proofreader of archaeal origin imparts multialdehyde stress tolerance to land plantsPradeep Kumar, Ankit Roy, Shivapura Jagadeesha Mukul, Avinash Kumar Singh, Dipesh Kumar Singh, Aswan Nalli, Pujaita Banerjee, Kandhalu Sagadevan Dinesh Babu, Bakthisaran Raman, Shobha P. Kruparani et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Domain Archaea: Structural and Phylogenetic Relations With Domain EukaryaGeoffrey B. Smith · 2023 · Elsevier eBooks
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