Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life

Spang, Anja, Caceres, Eva F., Ettema, Thijs J. G.·2017·Science

Cited by (357)

Items 301–357 of 357

  1. Additional file 1 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota
    Yuan-Guo Xie, Zhen‐Hao Luo, Bao‐Zhu Fang, Jian‐Yu Jiao, Qijun Xie, Xing-Ru Cao, Yan-Ni Qu, Yan-Lin Qi, Yang-Zhi Rao, Yu-Xian Li et al. · 2022 · Figshare
  2. Additional file 4 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota
    Yuan-Guo Xie, Zhen‐Hao Luo, Bao‐Zhu Fang, Jian‐Yu Jiao, Qijun Xie, Xing-Ru Cao, Yan-Ni Qu, Yan-Lin Qi, Yang-Zhi Rao, Yu-Xian Li et al. · 2022 · Figshare
  3. Editorial: Molecular Biology of Archaea - 2022
    Marleen van Wolferen, Solenne Ithurbide, Michel Geovanni Santiago‐Martínez, Arthur Charles‐Orszag · 2024 · Frontiers in Microbiology
  4. Archaea functional evolution and eukaryogenesis
    ZhongYi LU, Xiuzhu Dong, YuLong SHEN, Zhirui Zeng, XinYun JING, JinJie ZHOU, Dayu Zou, Xin Dai, Zhimeng Li, Xiaowei Zheng et al. · 2024 · Scientia Sinica Vitae
  5. Archaeal genomes linked to industrial wastewater and associated freshwater in South Africa
    John Paul Makumbi, Oliver K. I. Bezuidt, Samuel K. Leareng, Thulani Peter Makhalanyane · 2025 · Microbiology Resource Announcements
  6. Extensive data mining uncovers novel diversity among members of the rare biosphere within the Thermoplasmatota
    Mara Maeke, Xiuran Yin, Lea C. Wunder, Chiara Vanni, Tim Richter‐Heitmann, Samuel Miravet‐Verde, Hans‐Joachim Ruscheweyh, Shinichi Sunagawa, Jenny Fabian, Judith Piontek et al. · 2025 · Microbiome
  7. A Global Viromic Survey Reveals Unprecedented Viral Diversity Within Ammonium-Oxidizing Archaea and Related Lineages
    Kaiyang Zheng, Yantao Liang, Fabai Wu, Hao Yu, David Páez-Espino, Mario López‐Pérez, Sungeun Lee, Graeme W. Nicol, Christina Hazard, Andrew McMinn et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  8. Insights into Phylum Asgardarchaeota: Analysis of Two Novel MAGs Within Class Njordarchaeia
    Parthkumar Prajapati, Bupesh Giridharan, Chandrashekar Mootapally, Neelam Mustakali Nathani · 2025 · Indian Journal of Microbiology
  9. Unraveling the archaeal virosphere: diversity, functional and virus-host interactions
    Yang Zhao, Pengfei Liu, Meiling Feng, Rong Wen, Zhihao Zhang, Xuefeng Zhang, Xingyu Huang, Hongfei Chi · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
  10. Sugarcane Vinasse and Glycerol as Potential Carbon Sources for Sulfate-Rich Wastewater Treatment: Mitigating the Impacts of Acid Mine Drainage
    Elis Watanabe Nogueira, Leandro Augusto Gouvêa de Godoi, Pâmela T. Couto, Rodrigo B. Carneiro, Paula Yumi Takeda, Mirabelle Perossi Cunha, Bruna Del Busso Zampieri, Gunther Brucha, Márcia Helena Rissato Zamariolli Damianovic · 2025 · ACS Omega
  11. Additional file 1 of Microbial dark matter filling the niche in hypersaline microbial mats
    Hon Lun Wong, Fraser I. MacLeod, Richard Allen White III, Pieter T. Visscher, Brendan Paul Burns · 2020 · Figshare
  12. Additional file 2 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota
    Xie, Yuan-Guo, Luo, Zhen-Hao, Fang, Bao-Zhu, Jianyu Jiao, Xie, Qi-Jun, Cao, Xing-Ru, Qu, Yan-Ni, Qi, Yan-Lin, Rao, Yang-Zhi, Li, Yu-Xian et al. · 2022 · Figshare
  13. Additional file 2 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  14. Additional file 3 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. Nanohaloarchaeota
    Xie, Yuan-Guo, Luo, Zhen-Hao, Fang, Bao-Zhu, Jianyu Jiao, Xie, Qi-Jun, Cao, Xing-Ru, Qu, Yan-Ni, Qi, Yan-Lin, Rao, Yang-Zhi, Li, Yu-Xian et al. · 2022 · Figshare
  15. Additional file 3 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  16. Additional file 7 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  17. Additional file 2 of Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction
    Sophie A. Simon, Schmidt, Katharina, Lea Griesdorn, André Soares, Till L. V. Bornemann, Alexander J. Probst · 2024 · Figshare
  18. Additional file 3 of Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups
    Raphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield · 2022 · Figshare
  19. Additional file 8 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  20. Additional file 1 of Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstruction
    Sophie A. Simon, Schmidt, Katharina, Lea Griesdorn, André Soares, Till L. V. Bornemann, Alexander J. Probst · 2024 · Figshare
  21. Additional file 4 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  22. Additional file 2 of Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groups
    Raphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield · 2022 · Figshare
  23. Additional file 9 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  24. Additional file 1 of The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromolecules
    Zhang, Chuwen, Fang, Yun-Xin, Xiuran Yin, Lai, Hongfei, Kuang, Zenggui, Tianxueyu Zhang, Xu, Xiang-Po, Gunter Wegener, Wang, Jiang-Hai, Dong, Xiyang · 2023 · Figshare
  25. Additional file 1 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  26. Additional file 5 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  27. Additional file 6 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal vent
    Liu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
  28. Additional file 1 of Differences in archaeal diversity and potential ecological functions between saline and hypersaline lakes on Qinghai-Tibet Plateau were driven by multiple environmental and non-environmental factors beyond the salinity
    Wang, Yaqiong, Li, Wenxin, Guoyuan Bao, Mohan Bai, Huike Ye · 2024 · Figshare
  29. Archaea with a sweet tooth: isolation of novel sugar-degrading thermoacidophiles
    Anthony J. Kohtz · 2026 · mSystems
  30. Comparative Genomic Insights into MatE Transporter Diversity and Habitat Adaptation of Archaea
    Huan Leng, Leizhou Guo, Yuehua Chen, Liping Bai, Guihong Cha, Frank Delvigne · 2026 · Microorganisms
  31. EKOLOJİK DEĞİŞİMLERDE MOLEKÜLER FOSİLLERİN KULLANIMI: MESSİNİYEN TUZLULUK KRİZİ ÖRNEĞİ
    Ayça Doğrul Selver, Güldemin Darbaş · 2026 · Kahramanmaraş Sütçü İmam Üniversitesi Mühendislik Bilimleri Dergisi
  32. TraSPIN: inferring transporter specificity through language model-guided graph learning
    Tong Pan, Jie Liu, Jing Xu, Rong Dong Han, Zixu Ran, Xudong Guo, Yi Hao, Yue Bi, Fuyi Li, Jiangning Song · 2026 · Genome biology
  33. Life before oxygen : linking phylogenomics and paleogeochemistry to unravel the nature and function of microbiota in the early Archean
    Panagiotis S. Adam · 2018 · theses.fr (ABES)
  34. Functional studies of new protein-protein interactions potentially involved in homologous recombination in hyperthermophilic archaea : study of interactions between PCNA and Mre11-Rad50 complex & Primase and RadA
    Yang Lü · 2018 · theses.fr (ABES)
  35. Eléments génétiques mobiles et évolution génomique chez les Archées Thermococcales
    Catherine Badel · 2019
  36. Phylogenomic study of the evolutionary history of the Archaea and their link with eukaryogenesis
    Monique Aouad · 2018
  37. Etudes des interactions entre virus et hôtes archéens hydrothermaux hyperthermophiles
    Sarah Thiroux · 2019
  38. Identification et caractérisation fonctionnelle des communautés microbiennes en interaction avec les minéralisations hydrothermales
    Sébastien Le Guellec · 2019 · theses.fr (ABES)
  39. Métabolisme de l'ARN chez les archées : dialogue entre l'hélicase à ARN ASH-Ski2, l'exoribonucléase 5'- 3' aRNase J et l'exosome 3'- 5' à ARN, à proximité du ribosome
    Manon Batista · 2020
  40. Isolation and characterization of hyperthermophilic archaeal viruses
    Diana P. Baquero · 2020
  41. De l’origine des peptides d’adressage aux organites (mitochondries et chloroplastes)
    Clotilde Garrido · 2021
  42. Unveiling microbial communities along the polyextreme physicochemical gradients of Dallol and its surroundings (Danakil depression, Afar region, Ethiopia)
    Jodie Belilla · 2020
  43. Phylogenomic approaches to uncover the diversity and evolution of the bacterial cell envelope
    Daniela Megrian · 2020
  44. Phylogenomics & Molecular studies of Lhr-type SF2 helicases in Archaea and Bacteria
    Mirna Hajj · 2021
  45. Dynamique spatiale et temporelle des communautés mircrobiennes dans les édifices hydrothermaux actifs
    David François · 2021 · theses.fr (ABES)
  46. In vivo study of DNA topology in hyperthermophilic archaeon Thermococcus kodakarensis
    Paul Villain · 2021
  47. Introduction à la nanoarchaeologie clinique
    Yasmine Hassani · 2022
  48. Identification des enzymes de dégradation des sucres chez les Archées hyperthermophiles et détermination du rôle potentiel du régulateur TrmBL4
    Maria Batour · 2023
  49. Deep archaeal phylogeny and evolutionary dynamics of DPANNs
    Brittany A. Baker · 2024
  50. Close spatial and metabolic association between heterotrophic and ammonia-oxidizing marine Nitrososphaerota
    Qian Li, M Y Chen, Ye Lu, Cheng Xu, Yue Zheng, Zhirui Zeng, Dapeng Xu, Wei Qin, Yao Zhang · 2026 · ISME Communications
  51. Radiating pattern revealed by a deep learning model traces the evolutionary dynamics of the Archaea domain
    Zhenbo Lv, Yinzhao Wang, Yinzhao Wang · 2026 · The Innovation Life
  52. Emergence and divergence of blood cell lineages in the history of animal evolution
    Yosuke Nagahata, Hiroshi Kawamoto · 2026 · International Immunology
  53. Archaeal Diversity Sheds New Light on the Origin of the Eukaryotic Endomembrane System
    Zhongyi Lu, Siyu Zhang, Ning Song, Xiaoyuan Feng, Zhichao Zhou, Yang Liu, Meng Li · 2026 · Annual Review of Microbiology
  54. Dissection of in vivo archaeal RNA polymerase assembly reveals a modular pathway and stoichiometric control
    Jie Li, Wen Qi, Huaping Duan, Derong Ren, Jingfang Liu, Xiuzhu Dong · 2026 · mBio
  55. Phylogenetic reconciliation supports a methanogenic ancestor of the Archaea and a derived origin for host-associated lineages
    Wen-Cong Huang, Nina Dombrowski, Tara Mahendrarajah, Noah A Wahl, Alexandros Stamatakis, Gergely J. Szöllősi, Tom A. Williams, Anja Spang · 2026 · Nature Communications
  56. A genome catalog reveals the global landscape of the human gut archaeome and its relevance to inflammatory bowel disease
    Qiulong Yan, Changming Chen, Wei Yang, Yue Zhang, Guangyang Wang, Pan Zhang, Yawen Ni, Ruochun Guo, Yidi Zhang, Chenghaotian Xiao et al. · 2026 · Research Square
  57. Domain classification of archaeal proteomes reveals conserved fold repertoire
    Richard Dustin Schaeffer, Jimin Pei, Rui Guo, Jing Zhang, Kirill E. Medvedev, Qian Cong, Nick V. Grishin · 2026 · PLoS Computational Biology