Genomic exploration of the diversity, ecology, and evolution of the archaeal domain of life
Spang, Anja, Caceres, Eva F., Ettema, Thijs J. G.·2017·Science
Cited by (357)
Items 301–357 of 357
- Additional file 1 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. NanohaloarchaeotaYuan-Guo Xie, Zhen‐Hao Luo, Bao‐Zhu Fang, Jian‐Yu Jiao, Qijun Xie, Xing-Ru Cao, Yan-Ni Qu, Yan-Lin Qi, Yang-Zhi Rao, Yu-Xian Li et al. · 2022 · Figshare
- Additional file 4 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. NanohaloarchaeotaYuan-Guo Xie, Zhen‐Hao Luo, Bao‐Zhu Fang, Jian‐Yu Jiao, Qijun Xie, Xing-Ru Cao, Yan-Ni Qu, Yan-Lin Qi, Yang-Zhi Rao, Yu-Xian Li et al. · 2022 · Figshare
- Editorial: Molecular Biology of Archaea - 2022Marleen van Wolferen, Solenne Ithurbide, Michel Geovanni Santiago‐Martínez, Arthur Charles‐Orszag · 2024 · Frontiers in Microbiology
- Archaea functional evolution and eukaryogenesisZhongYi LU, Xiuzhu Dong, YuLong SHEN, Zhirui Zeng, XinYun JING, JinJie ZHOU, Dayu Zou, Xin Dai, Zhimeng Li, Xiaowei Zheng et al. · 2024 · Scientia Sinica Vitae
- Archaeal genomes linked to industrial wastewater and associated freshwater in South AfricaJohn Paul Makumbi, Oliver K. I. Bezuidt, Samuel K. Leareng, Thulani Peter Makhalanyane · 2025 · Microbiology Resource Announcements
- Extensive data mining uncovers novel diversity among members of the rare biosphere within the ThermoplasmatotaMara Maeke, Xiuran Yin, Lea C. Wunder, Chiara Vanni, Tim Richter‐Heitmann, Samuel Miravet‐Verde, Hans‐Joachim Ruscheweyh, Shinichi Sunagawa, Jenny Fabian, Judith Piontek et al. · 2025 · Microbiome
- A Global Viromic Survey Reveals Unprecedented Viral Diversity Within Ammonium-Oxidizing Archaea and Related LineagesKaiyang Zheng, Yantao Liang, Fabai Wu, Hao Yu, David Páez-Espino, Mario López‐Pérez, Sungeun Lee, Graeme W. Nicol, Christina Hazard, Andrew McMinn et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Insights into Phylum Asgardarchaeota: Analysis of Two Novel MAGs Within Class NjordarchaeiaParthkumar Prajapati, Bupesh Giridharan, Chandrashekar Mootapally, Neelam Mustakali Nathani · 2025 · Indian Journal of Microbiology
- Unraveling the archaeal virosphere: diversity, functional and virus-host interactionsYang Zhao, Pengfei Liu, Meiling Feng, Rong Wen, Zhihao Zhang, Xuefeng Zhang, Xingyu Huang, Hongfei Chi · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Sugarcane Vinasse and Glycerol as Potential Carbon Sources for Sulfate-Rich Wastewater Treatment: Mitigating the Impacts of Acid Mine DrainageElis Watanabe Nogueira, Leandro Augusto Gouvêa de Godoi, Pâmela T. Couto, Rodrigo B. Carneiro, Paula Yumi Takeda, Mirabelle Perossi Cunha, Bruna Del Busso Zampieri, Gunther Brucha, Márcia Helena Rissato Zamariolli Damianovic · 2025 · ACS Omega
- Additional file 1 of Microbial dark matter filling the niche in hypersaline microbial matsHon Lun Wong, Fraser I. MacLeod, Richard Allen White III, Pieter T. Visscher, Brendan Paul Burns · 2020 · Figshare
- Additional file 2 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. NanohaloarchaeotaXie, Yuan-Guo, Luo, Zhen-Hao, Fang, Bao-Zhu, Jianyu Jiao, Xie, Qi-Jun, Cao, Xing-Ru, Qu, Yan-Ni, Qi, Yan-Lin, Rao, Yang-Zhi, Li, Yu-Xian et al. · 2022 · Figshare
- Additional file 2 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 3 of Functional differentiation determines the molecular basis of the symbiotic lifestyle of Ca. NanohaloarchaeotaXie, Yuan-Guo, Luo, Zhen-Hao, Fang, Bao-Zhu, Jianyu Jiao, Xie, Qi-Jun, Cao, Xing-Ru, Qu, Yan-Ni, Qi, Yan-Lin, Rao, Yang-Zhi, Li, Yu-Xian et al. · 2022 · Figshare
- Additional file 3 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 7 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 2 of Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstructionSophie A. Simon, Schmidt, Katharina, Lea Griesdorn, André Soares, Till L. V. Bornemann, Alexander J. Probst · 2024 · Figshare
- Additional file 3 of Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groupsRaphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield · 2022 · Figshare
- Additional file 8 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 1 of Dancing the Nanopore limbo – Nanopore metagenomics from small DNA quantities for bacterial genome reconstructionSophie A. Simon, Schmidt, Katharina, Lea Griesdorn, André Soares, Till L. V. Bornemann, Alexander J. Probst · 2024 · Figshare
- Additional file 4 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 2 of Conserved and lineage-specific hypothetical proteins may have played a central role in the rise and diversification of major archaeal groupsRaphaël Méheust, Cindy J. Castelle, Alexander L. Jaffe, Jillian F. Banfield · 2022 · Figshare
- Additional file 9 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 1 of The majority of microorganisms in gas hydrate-bearing subseafloor sediments ferment macromoleculesZhang, Chuwen, Fang, Yun-Xin, Xiuran Yin, Lai, Hongfei, Kuang, Zenggui, Tianxueyu Zhang, Xu, Xiang-Po, Gunter Wegener, Wang, Jiang-Hai, Dong, Xiyang · 2023 · Figshare
- Additional file 1 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 5 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 6 of Metagenomic insights into Heimdallarchaeia clades from the deep-sea cold seep and hydrothermal ventLiu, Rui, Ruining Cai, Wang, Minxiao, Zhang, Jing, Zhang, Huan, Li, Chaolun, Sun, Chaomin · 2024 · Figshare
- Additional file 1 of Differences in archaeal diversity and potential ecological functions between saline and hypersaline lakes on Qinghai-Tibet Plateau were driven by multiple environmental and non-environmental factors beyond the salinityWang, Yaqiong, Li, Wenxin, Guoyuan Bao, Mohan Bai, Huike Ye · 2024 · Figshare
- Archaea with a sweet tooth: isolation of novel sugar-degrading thermoacidophilesAnthony J. Kohtz · 2026 · mSystems
- Comparative Genomic Insights into MatE Transporter Diversity and Habitat Adaptation of ArchaeaHuan Leng, Leizhou Guo, Yuehua Chen, Liping Bai, Guihong Cha, Frank Delvigne · 2026 · Microorganisms
- EKOLOJİK DEĞİŞİMLERDE MOLEKÜLER FOSİLLERİN KULLANIMI: MESSİNİYEN TUZLULUK KRİZİ ÖRNEĞİAyça Doğrul Selver, Güldemin Darbaş · 2026 · Kahramanmaraş Sütçü İmam Üniversitesi Mühendislik Bilimleri Dergisi
- TraSPIN: inferring transporter specificity through language model-guided graph learningTong Pan, Jie Liu, Jing Xu, Rong Dong Han, Zixu Ran, Xudong Guo, Yi Hao, Yue Bi, Fuyi Li, Jiangning Song · 2026 · Genome biology
- Life before oxygen : linking phylogenomics and paleogeochemistry to unravel the nature and function of microbiota in the early ArcheanPanagiotis S. Adam · 2018 · theses.fr (ABES)
- Functional studies of new protein-protein interactions potentially involved in homologous recombination in hyperthermophilic archaea : study of interactions between PCNA and Mre11-Rad50 complex & Primase and RadAYang Lü · 2018 · theses.fr (ABES)
- Eléments génétiques mobiles et évolution génomique chez les Archées ThermococcalesCatherine Badel · 2019
- Phylogenomic study of the evolutionary history of the Archaea and their link with eukaryogenesisMonique Aouad · 2018
- Etudes des interactions entre virus et hôtes archéens hydrothermaux hyperthermophilesSarah Thiroux · 2019
- Identification et caractérisation fonctionnelle des communautés microbiennes en interaction avec les minéralisations hydrothermalesSébastien Le Guellec · 2019 · theses.fr (ABES)
- Métabolisme de l'ARN chez les archées : dialogue entre l'hélicase à ARN ASH-Ski2, l'exoribonucléase 5'- 3' aRNase J et l'exosome 3'- 5' à ARN, à proximité du ribosomeManon Batista · 2020
- Isolation and characterization of hyperthermophilic archaeal virusesDiana P. Baquero · 2020
- De l’origine des peptides d’adressage aux organites (mitochondries et chloroplastes)Clotilde Garrido · 2021
- Unveiling microbial communities along the polyextreme physicochemical gradients of Dallol and its surroundings (Danakil depression, Afar region, Ethiopia)Jodie Belilla · 2020
- Phylogenomic approaches to uncover the diversity and evolution of the bacterial cell envelopeDaniela Megrian · 2020
- Phylogenomics & Molecular studies of Lhr-type SF2 helicases in Archaea and BacteriaMirna Hajj · 2021
- Dynamique spatiale et temporelle des communautés mircrobiennes dans les édifices hydrothermaux actifsDavid François · 2021 · theses.fr (ABES)
- In vivo study of DNA topology in hyperthermophilic archaeon Thermococcus kodakarensisPaul Villain · 2021
- Introduction à la nanoarchaeologie cliniqueYasmine Hassani · 2022
- Identification des enzymes de dégradation des sucres chez les Archées hyperthermophiles et détermination du rôle potentiel du régulateur TrmBL4Maria Batour · 2023
- Deep archaeal phylogeny and evolutionary dynamics of DPANNsBrittany A. Baker · 2024
- Close spatial and metabolic association between heterotrophic and ammonia-oxidizing marine NitrososphaerotaQian Li, M Y Chen, Ye Lu, Cheng Xu, Yue Zheng, Zhirui Zeng, Dapeng Xu, Wei Qin, Yao Zhang · 2026 · ISME Communications
- Radiating pattern revealed by a deep learning model traces the evolutionary dynamics of the Archaea domainZhenbo Lv, Yinzhao Wang, Yinzhao Wang · 2026 · The Innovation Life
- Emergence and divergence of blood cell lineages in the history of animal evolutionYosuke Nagahata, Hiroshi Kawamoto · 2026 · International Immunology
- Archaeal Diversity Sheds New Light on the Origin of the Eukaryotic Endomembrane SystemZhongyi Lu, Siyu Zhang, Ning Song, Xiaoyuan Feng, Zhichao Zhou, Yang Liu, Meng Li · 2026 · Annual Review of Microbiology
- Dissection of in vivo archaeal RNA polymerase assembly reveals a modular pathway and stoichiometric controlJie Li, Wen Qi, Huaping Duan, Derong Ren, Jingfang Liu, Xiuzhu Dong · 2026 · mBio
- Phylogenetic reconciliation supports a methanogenic ancestor of the Archaea and a derived origin for host-associated lineagesWen-Cong Huang, Nina Dombrowski, Tara Mahendrarajah, Noah A Wahl, Alexandros Stamatakis, Gergely J. Szöllősi, Tom A. Williams, Anja Spang · 2026 · Nature Communications
- A genome catalog reveals the global landscape of the human gut archaeome and its relevance to inflammatory bowel diseaseQiulong Yan, Changming Chen, Wei Yang, Yue Zhang, Guangyang Wang, Pan Zhang, Yawen Ni, Ruochun Guo, Yidi Zhang, Chenghaotian Xiao et al. · 2026 · Research Square
- Domain classification of archaeal proteomes reveals conserved fold repertoireRichard Dustin Schaeffer, Jimin Pei, Rui Guo, Jing Zhang, Kirill E. Medvedev, Qian Cong, Nick V. Grishin · 2026 · PLoS Computational Biology