Robust deep learning–based protein sequence design using ProteinMPNN
Dauparas, J., Anishchenko, I., Bennett, N., Bai, H., Ragotte, R. J., Milles, L. F., Wicky, B. I. M., Courbet, A. +14 more·2022·Science
Cited by (2,090)
Items 801–900 of 2,090
- Development of AI-designed protein binders for detection and targeting of cancer cell surface proteinsBianca Broske, Sophie C. Binder, Benjamin A. McEnroe, Tim Noah Kempchen, Caroline I. Fandrey, Julia M. Messmer, Elisabeth Tan, Peter Konopka, Dominic Ferber, Michelle C.R. Yong et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Adapting ProteinMPNN for antibody design without retrainingDiego del Alamo, Rahel Frick, Daphné Truan, Joel D. Karpiak · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Conditional Protein Structure Generation with Protpardelle-1cTianyu Lu, Richard W. Shuai, Petr Kouba, Zhaoyang Li, Yilin Chen, Akio Shirali, Jinho Kim, Po‐Ssu Huang · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- A Generative Foundation Model for Antibody DesignRubo Wang, Fandi Wu, Jiale Shi, Yidong Song, Yu Kong, Jianhua Ma, Bing He, Qihong Yan, Tianlei Ying, Peilin Zhao et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Geometric Tuning of Cytokine Receptor Association Modulates Synthetic Agonist SignalingMarc Expòsit, Mohamad H. Abedi, Aditya Krishnakumar, Shruti Jain, Ta-Yi Yu, Timothy R. Hercus, Divij Mathew, Sophie L. Gray-Gaillard, Zhijie Chen, William S. Grubbe et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Inhibition of ice recrystallization with designed twistless helical repeat proteinsde Haas, Robbert J., Pyles, Harley, Huddy, Evelyn B., van Ossenbruggen, Jannick, Zheng, Chuanbao, van den Broek, Daniëlle, Giezen, Sanne N., Carr, Ann, Bera, Asim K., Kang, Alex et al. · 2025 · Proceedings of the National Academy of Sciences
- Molecular Display of the Animal Meta-Venome for Discovery of Novel Therapeutic PeptidesHsiao, Meng-Hsuan, Miao, Yang, Liu, Zixing, Schütze, Konstantin, Limjunyawong, Nathachit, Chien, Daphne Chun-Che, Monteiro, Wayne Denis, Chu, Lee-Shin, Morgenlander, William, Jayaraman, Sahana et al. · 2025 · Molecular & Cellular Proteomics
- Limitations of the refolding pipeline for de novo protein designKorbeld, Kerlen T., Viliuga, Vsevolod, Fürst, Maximilian J. L. J. · 2026 · Protein Science
- Structure Prediction and Computational Protein Design for Efficient Biocatalysts and Bioactive ProteinsRebecca Buller, Jiřı́ Damborský, Donald Hilvert, Uwe T. Bornscheuer · 2024 · Angewandte Chemie
- Thermostable phospholipase C: A key to efficient and sustainable enzymatic oil degumming processesDiego S. Val, Luisina Di Nardo, Fiorela Marchisio, Franco Emanuel Lacava, Andrés Aguirre, Salvador Peirú, María Eugenia Castelli, Martín Espariz, Luciano A. Abriata, Hugo G. Menzella et al. · 2025 · Journal of the American Oil Chemists Society
- Computational Bioprospecting of EnzymesRuite Xiang, Mireia Martinez-Sugrañes, Rubén Muñoz‐Tafalla, Martin Floor, Vı́ctor Guallar · 2025 · Wiley Interdisciplinary Reviews Computational Molecular Science
- Screening de novo designed protein binders in unpurified lysate using flow induced dispersion analysisFrancisca Pinheiro, Jan Stanislaw Nowak, Elena Zueva, Emily C. Pheasant, Ida K. Grene, Vili Lampinen, Magnus Kjærgaard · 2025 · Protein Science
- Computational epitope profiling and AI-driven protein engineering enable rational design of multi-epitope vaccines against Mycobacterium tuberculosisXinfeng Li, Xinyu Tao, Mingyue Zhong, Yiyao Wang, Heng Xue, Binda T. Andongma, Shan‐Ho Chou, Hongping Wei, Jin He, Hang Yang · 2025 · Computational and Structural Biotechnology Journal
- De Novo Design of High‐Affinity Miniprotein Binders Targeting Francisella Tularensis Virulence FactorGizem Gokce Alpkilic, Buwei Huang, Andi Liu, Lieselotte S.M. Kreuk, Yaxi Wang, Victor Adebomi, Yensi Flores Bueso, Asim K. Bera, Alex Kang, Stacey Gerben et al. · 2025 · Angewandte Chemie International Edition
- Reimagining computational macromolecular modeling: AI-driven approachesE. Sıla Özdemir, Hyunbum Jang, Ruth Nussinov, Özlem Keskin, Attila Gürsoy · 2025 · Biophysical Journal
- Deep learning–driven protein binder design for crop improvementMuhammad Salman Iqbal, Revocatus Bahitwa, Abdul Ali Azam, Hui Xu, Hai Wang · 2025 · aBIOTECH
- Geometric deep learning assists protein engineering. Opportunities and ChallengesJulián Alfonso García - Vinuesa, Jorge Alejandro Rojas, Nicole Soto-García, Nicolás Martínez, Diego Álvarez-Saravia, Roberto Uribe-Paredes, Mehdi D. Davari, Carlos Conca, Juan A. Asenjo, David Medina-Ortiz · 2025 · Biotechnology Advances
- A comprehensive survey on artificial intelligence for biomolecule designGuang Yang, Jianing Li, Qiong Wang, Lianlian Wu, Zhengshan Chen, Peng-Cheng Zhao, Haoyang Wang, Qinglong Wang, Bing Wen, Chao Song et al. · 2026 · The Innovation Life
- Deep learning-guided engineering of pectinase for enhanced catalytic performance in tobacco processingXueao Zheng, Tengfei Liu, Xiaozhan Qu, Zeping Sun, Xinyu Zhao, Yalong Xu, Chen Wang, Cunxi Wang, Peijian Cao, Qiansi Chen · 2026 · Bioresource Technology
- CyclicMPNN: stable cyclic peptide sequence generationAndrew C. Powers, Yanapat Janthana, Parisa Hosseinzadeh · 2026 · Digital Discovery
- Artificial intelligence in biologic drug discovery: A review of methodological evolution and therapeutic applicationsJianxin Tang, Daohong Gong, Honglin Li, Shiliang Li · 2026 · Acta Pharmaceutica Sinica B
- Multi-AOP: a lightweight multi-view deep learning framework for antioxidant peptide discoveryJianxiu Cai, Xinpo Lou, Chak Fong Chong, Deepa Alex, Joel Perdiz Arrais, Yapeng Wang, Shirley W. I. Siu · 2026 · Bioresources and Bioprocessing
- Discovery of High-Affinity Glutamine-Derived Peptides from Wheat Gliadin Targeting CaSR: a Computational Approach Integrating Deep Learning and Molecular DynamicsTianfei Yu, Tianshuo Hu, Kai Na, Qian Lin, Shujing Chen, Hua Xie, Miao Yu, Li Zhang, Xiaohua Guo · 2026 · Journal of Agricultural and Food Chemistry
- Mesostructured Water Enhances Stability of ProteinMPNN-Designed Ubiquitin-Fold ProteinsLu-Yi Chen, Wei-Lin Lu, Tanvi Pathania, I-Hsuan Chu, Meng‐Ru Ho, Wei-Chen Chuang, Yuan‐Chao Lou, Ta I Hung, Yohei Miyanoiri, Chia‐en A. Chang et al. · 2026 · Journal of the American Chemical Society
- Rational protein designJoel J. Chubb, Aimee L. Boyle, Katherine I. Albanese · 2026 · Current Opinion in Structural Biology
- Generative AI for synthetic biology: Designing biological parts, circuits, and genomesNayoung Kim, Giuliano De Carluccio, Kehan Zhang, James J. Collins · 2026 · Cell Systems
- Bioinformatic and computational biophysics tools for nanopore engineering: a review from standard approaches to machine learning advancementsMarco Reccia, Francesco Quilli, Kherim Willems, Blasco Morozzo della Rocca, Domenico Raimondo, Mauro Chinappi · 2026 · Journal of Nanobiotechnology
- A Comparative Review of Artificial Intelligence Applications in Small Molecule Versus Peptide Drug DiscoveryHan Lin, Horst Vogel, Huawei Zhang · 2026 · International Journal of Molecular Sciences
- AI-Designed Peptides as Tools for BiochemistryLauren Hong, Sophia Vincoff, Pranam Chatterjee · 2026 · Biochemistry
- Rapid customization of base editors via machine learning-powered combinatorial mutagenesisJiaxing Peng, Don C.T. Chan, Hoi Yee Chu, John H.C. Fong, Yin Kau Lam, Maggie S.H. Cheung, Wing Leung, Gigi C.G. Choi, Alan S.L. Wong · 2026 · Molecular Cell
- TMPRSS2-mediated coronavirus spike activation and inhibitionMatthew McCallum, James Brett Case, Jack T Brown, Young‐Jun Park, Jimin Lee, Emmajay Sutherland, Anupriya Aggarwal, Cecily A. Gibson, Florian A. Lempp, Cameron Stewart et al. · 2026 · Nature Structural & Molecular Biology
- Toward life with a 19–amino acid alphabet through generative artificial intelligence designLiyuan Liu, Charlotte Rochereau, Simon Kozlov, Guillaume Urtecho, Xiaonan Liu, Jiahui Zhao, Jasmine Wang, Yiming Huang, Yiming Qu, Zetian Zhang et al. · 2026 · Science
- The latest AI breakthroughs in structural biology: protein binder design and conformational state predictionLuciano A. Abriata · 2026 · Communications Biology
- De Novo Design of Miniature and Efficient Metallo-KetoreductasesY Xu, Yunhao Li, Hangwen Zheng, Elliot S. Delfosse, Y. N. Gao, David A. Baker, Pengfei Ji · 2026 · Journal of the American Chemical Society
- Artificial intelligence tools for enzyme engineering and metabolic engineeringMichael Volk, Vishal Kaushik Pillalamarri, Ruihan Guo, Ge Liu, Huimin Zhao · 2026 · Current Opinion in Biotechnology
- Structure-based engineering of Tor complexes reveals that two types of yeast TORC1 produce distinct phenotypesKamada, Yoshiaki, Umeda, Chiharu, Mukai, Yukio, Ohtsuka, Hokuto, Otsubo, Yoko, Yamashita, Akira, Kosugi, Takahiro · 2024 · Journal of Cell Science
- Building tailor-made bioenergetic proteins and circuits from de novo redox proteinsBenjamin J. Hardy, Ethan L. Bungay, Cam Mellor, Paul Curnow, J. L. Ross Anderson · 2024 · Current Opinion in Electrochemistry
- Thermostable WW-Domain Scaffold to Design Functional β-Sheet MiniproteinsChristina Lindner, Anke Friemel, Niklas Schwegler, Lisa Timmermann, Truc Lam Pham, Vanessa Reusche, Michael Kovermann, Franziska Thomas · 2024 · Journal of the American Chemical Society
- Reliability-Based Robust Design Optimization with Fourth-Moment Method for Ball Bearing WearYanzhong Wang, E Shiyuan, Kai Yang, Bin Xie, Fengxia Lu · 2024 · Lubricants
- How the technologies behind self‐driving cars, social networks, ChatGPT, and DALL‐E2 are changing structural biologyMatthias Bochtler · 2024 · BioEssays
- Rapid prediction of key residues for foldability by machine learning model enables the design of highly functional libraries with hyperstable constrained peptide scaffoldsFei Cai, Yuehua Wei, Daniel Kirchhofer, Andrew C. Chang, Yingnan Zhang · 2024 · PLoS Computational Biology
- Jointly Embedding Protein Structures and Sequences through Residue Level AlignmentFoster Birnbaum, Saachi Jain, Aleksander Mądry, Amy E. Keating · 2024 · PRX Life
- Stabilized designs of the malaria adhesin protein PvRBP2b for use as a potential diagnostic for Plasmodium vivaxJaison D Sa, Lucas Krauss, Lauren Smith, Laura D’Andrea, Li‐Jin Chan, Anju Abraham, Nicholas Kiernan‐Walker, Ramin Mazhari, Macie Lamont, Pailene S. Lim et al. · 2025 · Journal of Biological Chemistry
- Heuristic energy-based cyclic peptide designQiyao Zhu, Vikram Khipple Mulligan, Dennis E. Shasha · 2025 · PLoS Computational Biology
- MTPSol: Multimodal Twin Protein Solubility Prediction Architecture Based on Pretrained ModelsYuan Gao, Hongkui Wang, Landong Zhang, Fufeng Liu, Jiahai Zhou, Yang Gu · 2025 · Journal of Chemical Information and Modeling
- Progress toward new function and design of extracellular G protein-coupled receptor nanobodiesRoman R. Schlimgen, Brian F. Volkman · 2025 · Molecular Pharmacology
- Structure-guided engineering of snake toxins for selective modulation of adrenergic and muscarinic receptorsYixuan Zhong, Huihui Tao, Yu Zhang, Binbin He, Haizhan Jiao, Dandan Wang, Maikun Teng, Hongli Hu, Qiong Guo, Yuyong Tao · 2025 · Nature Communications
- Advances of computational protein design: Principles, strategies and applications in nutrition and healthZiling Zhao, Qian Qu, Fuwei Sun, Jiachen Zang, Bowen Zheng, Tuo Zhang, Guanghua Zhao, Chenyan Lv, Zhongjiang Wang · 2025 · Biotechnology Advances
- Artificial intelligence-enabled cellular Agriculture: Multiscale modeling, process optimization, and future directionsWenli Gao, Runnan Bai, Shengjie Ling · 2025 · Trends in Food Science & Technology
- Therapeutic Antibodies for Infectious Diseases: Recent Past, Present, and FutureSriram Subramaniam, James W. Saville, Frank Feng, Lee A. Freiburger · 2025 · Biochemistry
- Resolution of physics and deep learning-based protein engineering filters: A case study with a lipase for industrial substrate hydrolysisSpencer Gardiner, Peter Dollinger, Filip Kovačić, Jörg Pietruszka, Daniel H. Ess, Karl‐Erich Jaeger, G.F. Schroeder, Dennis Della Corte · 2025 · PLoS ONE
- ALLM-Ab: Active Learning-Driven Antibody Optimization Using Fine-Tuned Protein Language ModelsKairi Furui, Masahito Ohue · 2025 · Journal of Chemical Information and Modeling
- Customizing the structure of minimal TIM barrels to craft efficient de novo enzymesJulian Beck, B. J. Smith, Mark Kriegel, Niayesh Zarifi, Emily Freund, Ahana G. Harsha, Jan Hartmann, Roberto A. Chica, Birte Höcker · 2026 · Nature Chemical Biology
- Guiding protein design choices by per-residue energy breakdown analysis with an interactive web applicationFelipe Engelberger, Jonathan D. Zakary, Georg Künze · 2023 · Frontiers in Molecular Biosciences
- Protein sequence design on given backbones with deep learningYufeng Liu, Haiyan Liu · 2023 · Protein Engineering Design and Selection
- DIProT: A deep learning based interactive toolkit for efficient and effective Protein designJieling He, Wenxu Wu, Xiaowo Wang · 2024 · Synthetic and Systems Biotechnology
- The Damietta Server: a comprehensive protein design toolkitIwan Grin, Kateryna Maksymenko, Tobias Woertwein, Mohammad ElGamacy · 2024 · Nucleic Acids Research
- Constraint Decoupled Latent Diffusion for Protein BackmappingXu Han, Yuancheng Sun, Kai Chen, Yuxuan Ren, Kang Liu, Qiwei Ye · 2025 · Journal of Chemical Theory and Computation
- PepCARES: A Comprehensive Advanced Refinement and Evaluation System for Peptide Design and Affinity ScreeningWen Xu, Zhipeng Wu, Chengyun Zhang, Cheng Zhu, Hongliang Duan · 2024 · ACS Omega
- CCPL: Cross-Modal Contrastive Protein LearningJiangbin Zheng, Stan Ziqing Li · 2024 · Lecture notes in computer science
- Sequence-free landscape inference for directed evolutionSebastian Towers, Jessica James, Harrison Steel, Idris Kempf · 2026 · PLoS Computational Biology
- Molecular Modeling of Self-Assembling PeptidesStephen J. Jones, Alberto Pérez · 2023 · ACS Applied Bio Materials
- ZetaDesign: an end-to-end deep learning method for protein sequence design and side-chain packingJunyu Yan, Shuai Li, Ying Zhang, Aimin Hao, Qinping Zhao · 2023 · Briefings in Bioinformatics
- A cellular selection identifies elongated flavodoxins that support electron transfer to sulfite reductaseAlbert Truong, Dru Myerscough, Ian J. Campbell, Joshua T. Atkinson, Jonathan J. Silberg · 2023 · Protein Science
- Modeling Protein Structure Using Geometric Vector Field NetworksWeian Mao, Muzhi Zhu, Hao Chen, Chunhua Shen · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Thermodynamic Stabilization of Human FrataxinReyes Núñez‐Franco, Ángel Torres-Mozas, Claudio D. Navo, Andreas Schedlbauer, Mikel Azkargorta, Ibón Iloro, Félix Elortza, Gabriel Ortega, Óscar Millet, Francesca Peccati et al. · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- Protein Language Model Supervised Precise and Efficient Protein Backbone Design MethodBo Zhang, Kexin Liu, Zhuoqi Zheng, Yunfeiyang Liu, Junxi Mu, Ting Wei, Haifeng Chen · 2023 · bioRxiv (Cold Spring Harbor Laboratory)
- ProteinMPNN Recovers Complex Sequence Properties of Transmembrane β-barrelsMarissa Dolorfino, Rituparna Samanta, Anastassia Andreevna Vorobieva · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Designing symmetrical multi-component proteins using a hybrid generative AI approachDelphine Dessaux, Samuel Buchet, Lucie Barthe, Marianne Defresne, Gianluca Cioci, Simon de Givry, Luis Fernando Garcia-Alles, Thomas Schiex, Sophie Barbe · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Application of RFdiffusion to predict interspecies protein-protein interactions between fungal pathogens and cereal cropsOlivia C. Haley, Stephen F. Harding, Taner Z. Sen, Margaret Roth Woodhouse, Hye-Seon Kim, Carson M. Andorf · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Controllable All-Atom Protein Generation with Latent DiffusionAmy X. Lu, Jason Yang, Yueming Long, Theophile Lambert, Wilson Yan, Sarah A. Robinson, Kevin Yang, Vladimir Gligorijević, Kyunghyun Cho, Richard Bonneau et al. · 2024 · bioRxiv (Cold Spring Harbor Laboratory)
- Precise, Specific, and Sensitive De Novo Antibody Design Across Multiple CasesYewon Bang, Hyeonjin Cha, Kyesoo Cho, Jeonghyeon Gu, Daehyeon Gwak, Young-Hyun Han, Mirim Hong, Suyeon Kang, Sohee Kwon, Changsoo Lee et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- In-Silico Stability Predictors: Investigation of Performance Towards balanced Experimental DataKristine Degn, Mattia Utichi, Pablo Sánchez-Izquierdo Besora, Matteo Tiberti, Elena Papaleo · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- LuxSit Pro and sPro: Next-Generation Designed Luciferases for Bioluminescent Reporting and Complementation-Based DetectionRenan Vergara, Jonathan Wagner, Paursa Kamalian, Joseph L. Harman, Nicholas Lara, Elyse S. Fischer, Gonçalo J. L. Bernardes, Alfredo Quijano‐Rubio, Daniel‐Adriano Silva · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Multiplex design and discovery of proximity handles for programmable proteome editingChase C. Suiter, Green Ahn, Melodie Chiu, Yi Fu, Shayan Sadre, Jessica J. Simon, David S. Lee, Douglas M. Fowler, Dustin J. Maly, David A. Baker et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- High-Throughput De Novo Protein Design Yields Novel Immunomodulatory AgonistsMohamad H. Abedi, Marc Expòsit, Brian Coventry, Divij Mathew, Shruti Jain, Aditya Krishnakumar, Inna Goreshnik, Sophie L. Gray-Gaillard, Margaret C. Lunn-Halbert, Ta-Yi Yu et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Ancient amino acid sets enable stable protein foldsValerio Guido Giacobelli, S. Andersson, Pavel Srb, Tereza Neuwirthová, Z. Ruszová, J. Marhoul, S. Pšenička, A. Knetl, Lucie Bednářová, Václav Veverka et al. · 2025 · bioRxiv (Cold Spring Harbor Laboratory)
- Accurate protein stability prediction for small domains using mega-scale experimentsYehlin Cho, Kotaro Tsuboyama, Theodore J. Litberg, Michelle Jung, Adunoluwa Obisesan, Qian Wang, Claire M. Phoumyvong, Jane Thibeault, Sergey Ovchinnikov, Gabriel J. Rocklin · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Inherent limitations of zero-shot mutation prediction in protein engineeringPhillip R. Woolley, Aaron L. Feller, Andrew D. Ellington, Claus O. Wilke · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- Latent generative search unlocks de novo design of untapped biomolecular interactions at scaleKieran Didi, Danny Reidenbach, Matthew Penner, Supriya Ravichandran, Marshall Case, Mike Nichols, Erik Swanson, Alex Reis, Maggie Prescott, Yue Hong Qian et al. · 2026 · bioRxiv (Cold Spring Harbor Laboratory)
- A
<i>De Novo</i>
Designed Protein with Versatile Metal Binding and Tunable Hydrolytic ActivityHoffnagle, Alexander M., Srisantitham, Suppachai, Neeley, Maximilian, Tsai, Chia-Ying, Tezcan, F. Akif · 2025 · Biochemistry
- Artificial intelligence and first‐principle methods in protein redesign: A marriage of convenience?Cianferoni, Damiano, Vizarraga, David, Fernández‐Escamilla, Ana María, Fita, Ignacio, Hamdani, Rahma, Reche, Raul, Delgado, Javier, Serrano, Luis · 2025 · Protein Science
- Self-assembling protein cages: from coiled-coil module to machine learning-driven de novo design of next-generation biomaterialsArvind Kumar Gupta, Hana Esih, Helena Gradišar, Roman Jerala · 2025 · Materials Advances
- Artificial Friedel–Crafts Alkylase Design With Genetic Incorporated Unnatural S‐(3‐aminophenyl)‐CysteineYuhui Sheng, Yuting Bai, Yi Fu, Jie Lei, Zhi Zhou · 2026 · ChemCatChem
- Progress in structure prediction and design of adaptive immune receptorsTomer Cohen, Tanya Hochner, Dina Schneidman‐Duhovny · 2026 · Current Opinion in Structural Biology
- Flat Solenoidal Ice‐Binding Proteins as Scaffolds for Solid‐BindersRobbert J. de Haas, Jannick van Ossenbruggen, Jeffrey van der Hoeven, Roel J. Timmermans, Roderick P. Tas, Ilja Karina Voets, Renko J. de Vries · 2023 · Advanced Materials Interfaces
- Spiers Memorial Lecture: Engineering biocatalystsDonald Hilvert · 2024 · Faraday Discussions
- Artificial design of the genome: from sequences to the 3D structure of chromosomesJunyi Wang, Ze‐Xiong Xie, You‐Zhi Cui, Bingzhi Li, Ying‐Jin Yuan · 2024 · Trends in biotechnology
- De Novo Design of Large Polypeptides Using a Lightweight Diffusion Model Integrating LSTM and Attention Mechanism Under Per-Residue Secondary Structure ConstraintsSisheng Liao, Gang Xu, Jin Li, Jianpeng Ma · 2025 · Molecules
- Update: Enzymatische Synthese für industrielle AnwendungenThomas Bayer, Shuke Wu, Radka Šnajdrová, Kai Baldenius, Uwe T. Bornscheuer · 2025 · Angewandte Chemie
- A self-assembled protein β-helix as a self-contained biofunctional motifCamilla Dondi, Javier Garcia-Ruiz, Erol A. Hasan, Stephanie A. Rey, James E. Noble, Alex Hoose, Andrea Briones, Ibolya E. Kepiro, Nilofar Faruqui, Purnank Aggarwal et al. · 2025 · Nature Communications
- Stage-specific transcriptomic analysis reveals insights into the development, reproduction and biological function of allergens in the European house dust mite Dermatophagoides pteronyssinusJosé Cristian Vidal‐Quist, Félix Ortego, Bart N. Lambrecht, Stéphane Rombauts, Pedro Hernández‐Crespo · 2025 · BMC Genomics
- Structural Enzymology, Phylogenetics, Differentiation, and Symbolic Reflexivity at the Dawn of BiologyCharles W. Carter, Guo Qing Tang, Sourav Kumar Patra, Henry Dieckhaus, Brian A. Kuhlman, Jordan Douglas, Peter R. Wills, Remco Bouckaert, Milena Popović, Mark Adam Ditzler · 2025 · Genome Biology and Evolution
- Bio-Inspired and Protein-Based Elastomeric MaterialsXiaodong Han, Juanjuan Su, Jinɡjinɡ Li, Hongjie Zhang, Kai Liu · 2025 · Polymer science & technology.
- Fast uncovering of protein sequence diversity from structure*Luca Alessandro Silva, Barthelemy Meynard-Piganeau, Carlo Lucibello, Christoph Feinauer · 2025 · Journal of Statistical Mechanics Theory and Experiment
- De Novo Design of Specific Heterotrimeric Collagen‐Like Peptides via Genetic AlgorithmThi H. Bui, Oluwakamisi Adetunji, Carson C. Cole, Le Tracy Yu, Caroline M. Peterson, Jeffrey D. Hartgerink · 2025 · Advanced Science
- A message passing framework for precise cell state identification with scClassify2Wenze Ding, Yue Cao, Xiaohang Fu, Marni Torkel, Jean Yee Hwa Yang · 2025 · Genome biology
- Simplifying protein engineering with deep learningKevin Yang, Ava P. Amini · 2025 · Cell
- Synthetically designed anti-defense proteins overcome barriers to bacterial transformation and phage infectionJeremy Garb, David William Adams, Eliane Hadas Yardeni, Melanie Blokesch, Rotem Sorek · 2026 · Nature Communications
- HitScreen: A Sequence-Based Drug Virtual Screening Approach Using Data Augmentation and Protein Language ModelsGeng Chen, Jinbiao Liao, Yanzhen Yu, Kaixin Le, Hui Zhao, Yiyang Qin, Lvtao Cai, Rong Sheng · 2025 · Journal of Chemical Information and Modeling