Direct Modification and Activation of a Nuclear Receptor–PIP 2 Complex by the Inositol Lipid Kinase IPMK
Open accessAbstract
The transcriptional activity of a nuclear receptor is regulated by the phosphorylation status of a bound lipid.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
IPMK has roles in nutrient sensing, growth factor signaling, mRNA transport, and transcription regulation.
“Initially identified in yeast and later recognized as essential for mammalian embryonic development, IPMK has transitioned from a niche interest to a focal point in studies of nutrient sensing, growth factor signaling, mRNA transport, and transcription regulation.”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [21]
The Introduction identifies IPMK as required for adaptive transcriptional responses, and the Results report that its activity enhances SF-1-mediated transcription. The References list a yeast study linking IPMK to nuclear mRNA export, but the paper does not establish the claimed roles in nutrient sensing or growth-factor signaling. Page numbers are unavailable in our copy. (LLM, conf=0.83)
Experimental — accuracy not yet measuredIPMK converts PIP2 to PIP3, which is necessary for SF-1-mediated transcriptional activation.
“IPMK converts PIP2 to PIP3, which is necessary for SF-1-mediated transcriptional activation (Figure 3B).”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [21]
The Results section, “IPMK Specifically Phosphorylates PIP2 when bound to SF-1” (page unavailable), shows that IPMK converts SF-1-bound PIP2 to PIP3. “Reducing IPMK Activity Impairs SF-1 Transcriptional Activity” reports that IPMK knockdown lowers SF-1 target-gene expression and concludes that PIP3 generation enhances transcription; it does not establish that the conversion is strictly necessary for transcriptional activation. (LLM, conf=0.88)
Experimental — accuracy not yet measuredIPMK knockdown or mutations affecting PIP2 binding to SF-1 disrupt SF-1-mediated transcription.
“IPKM knockdown or mutations affecting PIP2 binding to SF-1 disrupt this process.”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [21]
IPMK's PI3K activity is crucial for activating SF-1-mediated transcription.
“IPMK’s PI3K activity is crucial for activating Steroidogenic factor 1 (SF-1)-mediated transcription [21].”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [21]
IPMK functions in mRNA export, chromatin remodeling, transcription, nutrient sensing, and growth factor signaling.
“Its diverse functions span a wide range of cellular processes, including mRNA export [17,18], chromatin remodeling [19,20], transcription [21,22], nutrient sensing [23], and growth factor signaling [15].”
From From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease (2025) · cites this paper as [21]
The citation [15] is attached to “growth factor signaling,” so that is the part assessed. The Introduction discusses IPMK’s lipid-kinase activity and transcriptional roles, but neither it nor the passages found by searching for growth factors and Akt states that IPMK functions in growth factor signaling. (LLM, conf=0.73)
Experimental — accuracy not yet measured
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Structure of Hdac3 Bound to Co-Repressor and Inositol Tetraphosphate
Watson, P. J., Fairall, L., Santos, G. M., & Schwabe, J. W. R. (2012) · Nature · doi:10.1038/nature10728 · Cited by 505 · cited 2× · see citing works
“This would be similar to the bridging function that inositol tetraphosphates appear to serve in co-repressor complex assembly (38).”
BackgroundA Role for Nuclear Inositol 1,4,5-Trisphosphate Kinase in Transcriptional Control
Odom, A. R., Stahlberg, A., Wente, S. R., & York, J. D. (2000) · Science · doi:10.1126/science.287.5460.2026 · Cited by 394 · see citing works
Modulation of ATP-Dependent Chromatin-Remodeling Complexes by Inositol Polyphosphates
Shen, X., Xiao, H., Ranallo, R., Wu, W.-H., & Wu, C. (2003) · Science · doi:10.1126/science.1078068 · Cited by 338 · see citing works
El Alami, M., Messenguy, F., Scherens, B., & Dubois, E. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03562.x · Cited by 83 · see citing works
Li, D., Urs, A. N., Allegood, J., Leon, A., Merrill, A. H., & Sewer, M. B. (2007) · Molecular and Cellular Biology · doi:10.1128/mcb.00355-07 · Cited by 58 · see citing works
Flagged first, then by citations
Research works printed but not linked: 38
- [1]Barlow CA Laishram RS Anderson RA Nuclear phosphoinositides: a signaling enigma wrapped in a compartmental conundrum Trends Cell Biol 20 25 2010 19846310 PMC2818233
- [2]Divecha N Banfic H Irvine RF The polyphosphoinositide cycle exists in the nuclei of Swiss 3T3 cells under the control of a receptor (for IGF-I) in the plasma membrane, and stimulation of the cycle increases nuclear diacylglycerol and apparently induces translocation of protein kinase C to the nucleus The EMBO journal 10 3207 1991 1655412 PMC453044
- [3]Irvine RF Nuclear lipid signalling Nat Rev Mol Cell Biol 4 349 2003 12728269
- [4]Smith CD Wells WW Phosphorylation of rat liver nuclear envelopes. II. Characterization of in vitro lipid phosphorylation J Biol Chem 258 9368 1983 6308005
- [5]Vann LR Wooding FB Irvine RF Divecha N Metabolism and possible compartmentalization of inositol lipids in isolated rat-liver nuclei Biochem J 327 Pt 2 569 1997 9359431 PMC1218831
- [6]Boronenkov IV Loijens JC Umeda M Anderson RA Phosphoinositide signaling pathways in nuclei are associated with nuclear speckles containing pre-mRNA processing factors Molecular biology of the cell 9 3547 1998 9843587 PMC25675
- [7]Osborne SL Thomas CL Gschmeissner S Schiavo G Nuclear PtdIns(4,5)P2 assembles in a mitotically regulated particle involved in pre-mRNA splicing Journal of cell science 114 2501 2001 11559758
- [8]Mellman DL Gonzales ML Song C Barlow CA Wang P Kendziorski C Anderson RA A PtdIns4,5P2-regulated nuclear poly(A) polymerase controls expression of select mRNAs Nature 451 1013 2008 18288197
- [9]Okada M Jang SW Ye K Akt phosphorylation and nuclear phosphoinositide association mediate mRNA export and cell proliferation activities by ALY Proceedings of the National Academy of Sciences of the United States of America 105 8649 2008 18562279 PMC2438396
- [10]Rando OJ Zhao K Janmey P Crabtree GR Phosphatidylinositol-dependent actin filament binding by the SWI/SNF-like BAF chromatin remodeling complex Proceedings of the National Academy of Sciences of the United States of America 99 2824 2002 11880634 PMC122432
- [11]Krylova IN Sablin EP Moore J Xu RX Waitt GM MacKay JA Juzumiene D Bynum JM Madauss K Montana V Lebedeva L Suzawa M Williams JD Williams SP Guy RK Thornton JW Fletterick RJ Willson TM Ingraham HA Structural analyses reveal phosphatidyl inositols as ligands for the NR5 orphan receptors SF-1 and LRH-1 Cell 120 343 2005 15707893
- [12]Sablin EP Blind RD Krylova IN Ingraham JG Cai F Williams JD Fletterick RJ Ingraham HA Structure of SF-1 bound by different phospholipids: evidence for regulatory ligands Mol Endocrinol 23 25 2009 18988706 PMC2646595
- [13]Li Y Choi M Cavey G Daugherty J Suino K Kovach A Bingham NC Kliewer SA Xu HE Crystallographic identification and functional characterization of phospholipids as ligands for the orphan nuclear receptor steroidogenic factor-1 Molecular cell 17 491 2005 15721253
- [14]Mullaney BC Blind RD Lemieux GA Perez CL Elle IC Faergeman NJ Van Gilst MR Ingraham HA Ashrafi K Regulation of C. elegans fat uptake and storage by acyl-CoA synthase-3 is dependent on NR5A family nuclear hormone receptor nhr-25 Cell metabolism 12 398 2010 20889131 PMC2992884
- [15]Lee JM Lee YK Mamrosh JL Busby SA Griffin PR Pathak MC Ortlund EA Moore DD A nuclear-receptor-dependent phosphatidylcholine pathway with antidiabetic effects Nature 474 506 2011 21614002 PMC3150801
- [16]Bashamboo A Ferraz-de-Souza B Lourenco D Lin L Sebire NJ Montjean D Bignon-Topalovic J Mandelbaum J Siffroi JP Christin-Maitre S Radhakrishna U Rouba H Ravel C Seeler J Achermann JC McElreavey K Human male infertility associated with mutations in NR5A1 encoding steroidogenic factor 1 Am J Hum Genet 87 505 2010 20887963 PMC2948805
- [17]Biason-Lauber A Schoenle EJ Apparently normal ovarian differentiation in a prepubertal girl with transcriptionally inactive steroidogenic factor 1 (NR5A1/SF-1) and adrenocortical insufficiency Am J Hum Genet 67 1563 2000 11038323 PMC1287931
- [18]Thomas CC Deak M Alessi DR van Aalten DM High-resolution structure of the pleckstrin homology domain of protein kinase b/akt bound to phosphatidylinositol (3,4,5)-trisphosphate Current biology: CB 12 1256 2002 12176338
- [19]Schaaf G Ortlund EA Tyeryar KR Mousley CJ Ile KE Garrett TA Ren J Woolls MJ Raetz CR Redinbo MR Bankaitis VA Functional anatomy of phospholipid binding and regulation of phosphoinositide homeostasis by proteins of the sec14 superfamily Molecular cell 29 191 2008 18243114 PMC7808562
- [20]Resnick AC Snowman AM Kang BN Hurt KJ Snyder SH Saiardi A Inositol polyphosphate multikinase is a nuclear PI3-kinase with transcriptional regulatory activity Proceedings of the National Academy of Sciences of the United States of America 102 12783 2005 16123124 PMC1200306
- [21]Maag D Maxwell MJ Hardesty DA Boucher KL Choudhari N Hanno AG Ma JF Snowman AS Pietropaoli JW Xu R Storm PB Saiardi A Snyder SH Resnick AC Inositol polyphosphate multikinase is a physiologic PI3-kinase that activates Akt/PKB Proceedings of the National Academy of Sciences of the United States of America 108 1391 2011 21220345 PMC3029688
- [22]Holmes W Jogl G Crystal structure of inositol phosphate multikinase 2 and implications for substrate specificity J Biol Chem 281 38109 2006 17050532
- [24]Saiardi A Caffrey JJ Snyder SH Shears SB Inositol polyphosphate multikinase (ArgRIII) determines nuclear mRNA export in Saccharomyces cerevisiae FEBS Lett 468 28 2000 10683435
- [25]Dubois E Messenguy F Pleiotropic function of ArgRIIIp (Arg82p), one of the regulators of arginine metabolism in Saccharomyces cerevisiae. Role in expression of cell-type-specific genes Molecular & general genetics: MGG 243 315 1994 8043104
- [27]Steger DJ Haswell ES Miller AL Wente SR O’Shea EK Regulation of chromatin remodeling by inositol polyphosphates Science 299 114 2003 12434012 PMC1458531
- [28]Frederick JP Mattiske D Wofford JA Megosh LC Drake LY Chiou ST Hogan BL York JD An essential role for an inositol polyphosphate multikinase, Ipk2, in mouse embryogenesis and second messenger production Proceedings of the National Academy of Sciences of the United States of America 102 8454 2005 15939867 PMC1150869
- [29]Miller GJ Hurley JH Crystal structure of the catalytic core of inositol 1,4,5-trisphosphate 3-kinase Molecular cell 15 703 2004 15350215
- [30]Whitby RJ Stec J Blind RD Dixon S Leesnitzer LM Orband-Miller LA Williams SP Willson TM Xu R Zuercher WJ Cai F Ingraham HA Small molecule agonists of the orphan nuclear receptors steroidogenic factor-1 (SF-1, NR5A1) and liver receptor homologue-1 (LRH-1, NR5A2) J Med Chem 54 2266 2011 21391689 PMC4151520
- [31]Knight ZA Feldman ME Balla A Balla T Shokat KM A membrane capture assay for lipid kinase activity Nat Protoc 2 2459 2007 17947987 PMC2919233
- [32]Chang SC Miller AL Feng Y Wente SR Majerus PW The human homolog of the rat inositol phosphate multikinase is an inositol 1,3,4,6-tetrakisphosphate 5-kinase J Biol Chem 277 43836 2002 12223481
- [33]Mayr GW Windhorst S Hillemeier K Antiproliferative plant and synthetic polyphenolics are specific inhibitors of vertebrate inositol-1,4,5-trisphosphate 3-kinases and inositol polyphosphate multikinase J Biol Chem 280 13229 2005 15659385
- [34]Planchon SM Waite KA Eng C The nuclear affairs of PTEN Journal of cell science 121 249 2008 18216329
- [35]McConnachie G Pass I Walker SM Downes CP Interfacial kinetic analysis of the tumour suppressor phosphatase, PTEN: evidence for activation by anionic phospholipids Biochem J 371 947 2003 12534371 PMC1223325
- [36]Shears SB How versatile are inositol phosphate kinases? Biochem J 377 265 2004 14567754 PMC1223885
- [39]Zhao K Wang W Rando OJ Xue Y Swiderek K Kuo A Crabtree GR Rapid and phosphoinositol-dependent binding of the SWI/SNF-like BAF complex to chromatin after T lymphocyte receptor signaling Cell 95 625 1998 9845365
- [40]Yu JW Mendrola JM Audhya A Singh S Keleti D DeWald DB Murray D Emr SD Lemmon MA Genome-wide analysis of membrane targeting by S. cerevisiae pleckstrin homology domains Molecular cell 13 677 2004 15023338
- [42]Hait NC Allegood J Maceyka M Strub GM Harikumar KB Singh SK Luo C Marmorstein R Kordula T Milstien S Spiegel S Regulation of histone acetylation in the nucleus by sphingosine-1-phosphate Science 325 1254 2009 19729656 PMC2850596
- [43]Lee FY Faivre EJ Suzawa M Lontok E Ebert D Cai F Belsham DD Ingraham HA Eliminating SF-1 (NR5A1) sumoylation in vivo results in ectopic hedgehog signaling and disruption of endocrine development Developmental cell 21 315 2011 21820362 PMC3157481
Cited by
Sorted by citations
A P53-Phosphoinositide Signalosome Regulates Nuclear AKT Activation
Chen, M., Choi, S., Wen, T., Chen, C., Thapa, N., Lee, J. H., Cryns, V. L., & Anderson, R. A. (2022) · Nature Cell Biology · doi:10.1038/s41556-022-00949-1 · Cited by 117 · see citing works
Adrenocortical zonation, renewal, and remodeling
Pihlajoki, M., Dörner, J., Cochran, R. S., Heikinheimo, M., & Wilson, D. B. (2015) · Frontiers in Endocrinology · doi:10.3389/fendo.2015.00027 · Cited by 114 · see citing works
Interplay among transcription factors Ets21c, Fos and Ftz-F1 drives JNK-mediated tumor malignancy
Külshammer, E., Mundorf, J., Kilinc, M., Frommolt, P., Wagle, P., & Uhlirova, M. (2015) · Disease Models & Mechanisms · doi:10.1242/dmm.020719 · Cited by 65 · see citing works
From Obscurity to Prominence: IPMK’s Expanding Role in Cellular Signaling, Physiology, and Disease
Mishra, S. H., Chatterjee, S., Viera-Preval, L., & Guha, P. (2025) · Biomolecules · doi:10.3390/biom15091266 · Cited by 1 · see citing works
“( v ) In transcriptional activation, SF-1 binds IPMK-generated PIP 3 , which is essential for SF-1 activation as a transcription factor [21].”
Influential
- Authors
- Blind, R. D., Suzawa, M., & Ingraham, H. A.
- Affiliations
- University of California, San Francisco (US)
- Corresponding author
- Ingraham, Holly A.
- Venue
- Science Signaling
- Published
- 2012-06-19
- Volume
- 5
- Issue
- 229
- Pages
- ra44-ra44
- ISSN
- 1937-9145 (ISSN-L)
- 1945-0877
- PMC
- PMC3395721
- OpenAlex
- W2060804452
- Cited by
- 117
- References
- 5
- Citations by year
- 2026: 9 · 2025: 19 · 2024: 7 · 2023: 7 · 2022: 3 · 2021: 5 · 2020: 4 · 2019: 9 · 2018: 5 · 2017: 10 · 2016: 6 · 2015: 12 · 2014: 4 · 2013: 12 · 2012: 5
- FWCI
- 4.24
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science Signaling (publishedVersion)
- PubMed (publishedVersion)
- Europe PMC (PubMed Central) (acceptedVersion)
- PubMed Central (acceptedVersion)
- eScholarship (California Digital Library) (submittedVersion)
- Funders
- National Institute of General Medical Sciences (K12GM081266)
- National Institute of Diabetes and Digestive and Kidney Diseases (DK072246, R01DK072246)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Protein Kinase Regulation and GTPase Signaling
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › PI3K/AKT/mTOR signaling in cancer
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Biochemistry › Lipid metabolism and biosynthesis
- Keywords
- inositol polyphosphate multikinase, phosphatidylinositol 4,5-bisphosphate, steroidogenic factor 1, phosphatidylinositol 3,4,5-trisphosphate, PTEN, lipid phosphatase, transcriptional activity, phosphatidylinositol 3-kinase
- MeSH terms
- Binding Sites, Cell Nucleus, Humans, Kinetics, Models, Molecular, Mutation, Phosphorylation, Protein Binding, Substrate Specificity, Blotting, Western, Molecular Structure, Signal Transduction, Protein Structure, Tertiary, Phosphotransferases (Alcohol Group Acceptor), Phosphatidylinositol Phosphates, Phosphatidylinositol 4,5-Diphosphate, Phosphatidylinositol 3-Kinases, RNA Interference, Chromatin Immunoprecipitation, PTEN Phosphohydrolase, Steroidogenic Factor 1, HEK293 Cells
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review