Novel, Versatile, and Tightly Regulated Expression System for E scherichia coli Strains
Open accessAbstract
A novel tightly regulated gene expression system was developed for Escherichia coli by applying the regulatory elements of the Pseudomonas putida F1 cym and cmt operons to control target gene expression at the transcriptional level by using p -isopropylbenzoate (cumate) as an inducer. This novel expression system, referred to as the cumate gene switch, includes a specific expression vector, pNEW, that contains a partial T 5 phage promoter combined with the Pseudomonas -based synthetic operator and the cymR repressor protein-encoding gene designed to express constitutively in the host strain. The induction of transcription relies on the addition of the exogenous inducer (cumate), which is nontoxic to the culture, water soluble, and inexpensive. The characteristics and potential of the expression system were determined. Using flow cytometry and fed-batch fermentations, we have shown that, with the newly developed cumate-regulated system, (i) higher recombinant product yields can be obtained than with the pET (isopropyl-β- d -thiogalactopyranoside [IPTG])-induced expression system, (ii) expression is tightly regulated, (iii) addition of cumate quickly results in a fully induced and homogenous protein-expressing population in contrast to the bimodal expression profile of an IPTG-induced population, (iv) expression can be modulated by varying the cumate concentration, and (v) the cumate-induced population remains induced and fully expressing even at 8 h following induction, resulting in high yields of the target protein Furthermore, the cumate gene switch described in this article is applicable to a wide range of E. coli strains.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the presence of cumate, the pNEW vector increases production yield of recombinant proteins by two to three-fold compared to pET-based IPTG-inducible systems.
“In the presence of cumate, the pNEW vector is able to increase the production yield of recombinant proteins by two to three-fold compared to pET-based IPTG-inducible systems.”
From Evolution of Escherichia coli Expression System in Producing Antibody Recombinant Fragments (2020) · cites this paper as [72]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Fanelli, D. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005738 · Cited by 1,911 · see citing works
Soluble expression of recombinant proteins in the cytoplasm of Escherichia coli
Sørensen, H. P., & Mortensen, K. K. (2005) · Microbial Cell Factories · doi:10.1186/1475-2859-4-1 · Cited by 841 · see citing works
Betulin Is a Potent Anti-Tumor Agent that Is Enhanced by Cholesterol
Mullauer, F. B., Kessler, J. H., & Medema, J. P. (2009) · PLoS ONE · doi:10.1371/journal.pone.0005361 · Cited by 688 · see citing works
Optimizing scale-up fermentation processes
Thiry, M., & Cingolani, D. (2002) · Trends in Biotechnology · doi:10.1016/s0167-7799(02)01913-3 · Cited by 102 · see citing works
Flagged first, then by citations
Research works printed but not linked: 47
- [1]Baneyx, F. 1999. Recombinant protein expression in Escherichia coli. Curr. Opin. Biotechnol. 10:411-421. [DOI] [PubMed] [Google Scholar]
- [2]Bhandari, P., and J. Gowrishankar. 1997. An Escherichia coli host strain useful for efficient overproduction of cloned gene products with NaCl as the inducer. J. Bacteriol. 179:4403-4406. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [3]Bujard, H., R. Gentz, M. Lanzer, D. Stüber, M. Müller, I. Ibrahimi, M. T. Häuptle, and B. Dobberstein. 1987. A T5 promoter-based transcription-translation system for the analysis of proteins in vitro and in vivo. Methods Enzymol. 155:416-433. [DOI] [PubMed] [Google Scholar]
- [4]Chatterjee, D. K., and D. Esposito. 2006. Enhanced soluble protein expression using two new fusion tags. Protein Expr. Purif. 46:122-129. [DOI] [PubMed] [Google Scholar]
- [5]Chaves, A. C., F. G. C. Abath, J. L. Lima-Filho, J. M. S. Cabral, and N. Lucena-Silva. 1999. Studies on growth kinetics and plasmid stability of recombinant Escherichia coli expressing a Schistosoma mansoni antigen. Bioprocess Engin. 21:355-361. [Google Scholar]
- [6]Choi, Y. J., C. B. Míguez, and B. H. Lee. 2004. Characterization and heterologous gene expression of a novel esterase from Lactobacillus casei CL96. Appl. Environ. Microbiol. 70:3213-3221. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [7]Choi, Y. J., L. Morel, D. Bourque, A. Mullick, B. Massie, and C. B. Míguez. 2006. Bestowing inducibility on the cloned methanol dehydrogenase promoter (PmxaF) of Methylobacterium extorquens by applying regulatory elements of Pseudomonas putida F1. Appl. Environ. Microbiol. 72:7723-7729. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [8]De Lorenzo, V., L. Eltis, B. Kessler, and K. N. Timmis. 1993. Analysis of Pseudomonas gene products using lacIq/Ptrp-lac plasmids and transposons that confer conditional phenotypes. Gene 123:17-24. [DOI] [PubMed] [Google Scholar]
- [9]De Mey, M., J. Maertens, G. J. Lequeux, W. K. Soetaert, and E. J. Vandamme. 2007. Construction and model-based analysis of a promoter library for E. coli: an indispensable tool for metabolic engineering. BMC Biotechnol. 7:34. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [10]Eaton, R. W. 1996. p-Cumate catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA carrying the cmt operon. J. Bacteriol. 178:1351-1362. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [11]Eaton, R. W. 1997. p-Cymene catabolic pathway in Pseudomonas putida F1: cloning and characterization of DNA encoding conversion of p-cymene to p-cumate. J. Bacteriol. 179:3171-3180. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [12]Figge, J., C. Wright, C. J. Collins, T. M. Roberts, and D. M. Livingston. 1988. Stringent regulation of stably integrated chloramphenicol acetyl transferase genes by E. coli lac repressor in monkey cells. Cell 52:713-722. [DOI] [PubMed] [Google Scholar]
- [13]Georgiou, G., and L. Segatori. 2005. Preparative expression of secreted proteins in bacteria: status report and future prospects. Curr. Opin. Biotechnol. 16:538-545. [DOI] [PubMed] [Google Scholar]
- [14]Giacalone, M. J., A. M. Gentile, B. T. Lovitt, N. L. Berkley, C. W. Gunderson, and M. W. Suber. 2006. Toxic protein expression in Escherichia coli using a rhamnose-based tightly regulated and tunable promoter system. Biotechniques 3:355-366. [DOI] [PubMed] [Google Scholar]
- [15]Glick, B. R. 1995. Metabolic load and heterologous gene expression. Biotechnol. Adv. 13:247-261. [DOI] [PubMed] [Google Scholar]
- [16]Grant, S. G. N., J. Jessee, F. R. Bloom, and D. Hanahan. 1990. Differential plasmid rescue from transgenic mouse DNAs into Escherichia coli methylation-restriction mutants. Proc. Natl. Acad. Sci. U. S. A. 87:4645-4649. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [17]Gupta, J. C., M. Jaisani, G. Pandey, and K. J. Mukherjee. 1999. Enhancing recombinant protein yields in Escherichia coli using the T7 system under the control of heat inducible λPL promoter. J. Biotechnol. 68:125-134. [DOI] [PubMed] [Google Scholar]
- [18]Hanahan, D. 1985. Techniques for transformation of Escherichia coli, p. 109-135. In D. M. Glover (ed.), DNA cloning: a practical approach, vol. 1. IRL Press, McLean, VA.
- [19]Hashemzadeh-Bonehi, L., F. Mehraein-Ghomi, C. Mitsopoulos, J. P. Jacob, E. S. Hennessy, and J. K. Broome-Smith. 1998. Importance of using lac rather than ara promoter vectors for modulating the levels of toxic gene products in Escherichia coli. Mol. Microbiol. 30:676-678. [DOI] [PubMed] [Google Scholar]
- [20]Hung, M. N., Z. Xia, N. T. Hu, and B. H. Lee. 2001. Molecular and biochemical analysis of two β-galactosidases from Bifidobacterium infantis HL96. Appl. Environ. Microbiol. 67:4256-4263. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [21]Jaeger, K. E., A. Steinbüchel, and D. Jendrossek. 1995. Substrate specificities of bacterial polyhydroxyalkanoate depolymerases and lipases: bacterial lipases hydrolyze poly(omega-hydroxyalkanoates). Appl. Environ. Microbiol. 61:3113-3118. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [22]Jana, S., and J. K. Deb. 2005. Strategies for the production of heterologous proteins in Escherichia coli. Appl. Microbiol. Biotechnol. 67:289-298. [DOI] [PubMed] [Google Scholar]
- [23]Jensen, K. F. 1993. The Escherichia coli K-12 “wild types” W3110 and MG1655 have an rph frameshift mutation that leads to pyrimidine starvation due to low pyrE expression levels. J. Bacteriol. 175:3401-3407. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [24]Kaur, P., S. Agarwal, and S. Datta. 2009. Delineating bacteriostatic and bacteriocidal targets in Mycobacteria using IPTG inducible antisense expression. PLoS One 4:1-15. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [25]Keasling, J. D. 1999. Gene-expression tools for the metabolic engineering of bacteria. Trends Biotechnol. 17:452-459. [DOI] [PubMed] [Google Scholar]
- [26]Keyes, W., and A. Mills. 2003. Inducible systems see the light. Trends Biotechnol. 21:53-55. [DOI] [PubMed] [Google Scholar]
- [27]Knodler, L. A., E. O. Sekyere, T. S. Stewart, P. J. Schofield, and M. R. Edwards. 1998. Cloning and expression of a prokaryotic enzyme, arginine deiminase, from a primitive eukaryote Giardia intestinalis. J. Biol. Chem. 273:4470-4477. [DOI] [PubMed] [Google Scholar]
- [28]Kosinski, M. J., U. Rinas, and J. E. Bailey. 1992. Isopropyl-beta-D-thiogalactopyranoside influences the metabolism of E. coli. Appl. Microbiol. Biotechnol. 36:782-784. [Google Scholar]
- [29]Lee, S. Y. 1996. High cell-density culture of Escherichia coli. Trends Biotechnol. 14:98-105. [DOI] [PubMed] [Google Scholar]
- [30]Losen, M., B. Frölich, M. Pohl, and J. Büchs. 2004. Effect of oxygen limitation and medium composition on Escherichia coli fermentation in shake-flask cultures. Biotechnol. Prog. 20:1062-1068. [DOI] [PubMed] [Google Scholar]
- [31]Mullick, A., Y. Xu, R. Warren, M. Koutroumanis, C. Guilbault, S. Broussau, F. Malenfant, L. Bourget, L. Lamoureux, R. Lo, A. Caron, A. Pilotte, and B. Massie. 2006. The cumate gene-switch: a system for regulated expression in mammalian cells. BMC Biotechnol. 6:43. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [32]Osborne, M. J., Z. Su, V. Sridaran, and F. Ni. 2003. Efficient expression of isotopically labeled peptides for high resolution NMR studies: application to the Cdc42/Rac binding domains of virulent kinases in Candida albicans. J. Biomol. NMR 26:317-326. [DOI] [PubMed] [Google Scholar]
- [33]Otto, C. M., F. Niagro, X. Su, and C. A. Rawlings. 1995. Expression of recombinant tumor necrosis factor is toxic to Escherichia coli. Clin. Diagn. Lab. Immunol. 2:740-746. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [34]Patkar, A., N. Vijayasankaran, D. W. Urry, and F. Srienc. 2002. Flow cytometry as a useful tool for process development: rapid evaluation of expression systems. J. Biotechnol. 93:217-229. [DOI] [PubMed] [Google Scholar]
- [35]Qing, G., L. C. Ma, A. Khorchid, G. V. Swapna, T. K. Mal, M. M. Takayama, B. Xia, S. Phadtare, H. Ke, T. Acton, G. T. Montelione, M. Ikura, and M. Inouye. 2004. Cold-shock induced high-yield protein production in. Escherichia coli. Nat. Biotechnol. 22:826-827. [DOI] [PubMed] [Google Scholar]
- [36]Riesenberg, D., and R. Guthke. 1999. High cell density cultivation of microorganisms. Appl. Microbiol. Biotechnol. 51:422-430. [DOI] [PubMed] [Google Scholar]
- [37]Rossi, F. M., and H. M. Blau. 1998. Recent advances in inducible gene expression systems. Curr. Opin. Biotechnol. 9:451-456. [DOI] [PubMed] [Google Scholar]
- [38]Schein, C. H., and M. H. M. Noteborn. 1988. Formation of soluble recombinant proteins in E. coli is favored by lower growth temperature. Biotechnology (NY) 6:291-294. [Google Scholar]
- 38a.Sevastsyanovich, Y. R., S. N. Alfasi, and J. A. Cole. 2010. Sense and nonsense from a systems biology approach to microbial recombinant protein production. Biotechnol. Appl. Biochem. 55:9-28. [DOI] [PubMed] [Google Scholar]
- [39]Siegele, D. A., and J. C. Hu. 1997. Gene expression from plasmids containing the araBAD promoter at subsaturating inducer concentrations represents mixed populations. Proc. Natl. Acad. Sci. U. S. A. 94:8168-8172. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [41]Staub, J. M., B. Garcia, J. Graves, P. T. J. Hajdukiewicz, P. Hunter, N. Nehra, V. Paradkar, M. Schlittler, J. B. Carroll, I. Spatola, D. Ward, Y. E. Guangning, and D. A. Russell. 2000. High-yield production of a human therapeutic protein in tobacco chloroplasts. Nat. Biotechnol. 18:333-338. [DOI] [PubMed] [Google Scholar]
- [42]Studier, F. W., and B. Moffatt. 1986. Use of bacteriophage T7 RNA polymerase to direct selective high-level expression of cloned genes. J. Mol. Biol. 189:113-130. [DOI] [PubMed] [Google Scholar]
- [43]Tao, H., C. Bausch, C. Richmond, F. R. Blattner, and T. Conway. 1999. Functional genomics: expression analysis of Escherichia coli growing on minimal and rich media. J. Bacteriol. 181:6425-6440. [DOI] [PMC free article] [PubMed] [Google Scholar]
- [45]Thomas, J. G., and F. Baneyx. 1996. Protein misfolding and inclusion body formation in recombinant Escherichia coli cells overexpressing heat-shock proteins. J. Biol. Chem. 271:11141-11147. [DOI] [PubMed] [Google Scholar]
- [46]Wang, Z. W., W. S. Law, and Y. P. Chao. 2004. Improvement of the thermoregulated T7 expression system by using the heat-sensitive lacI. Biotechnol. Prog. 20:1352-1358. [DOI] [PubMed] [Google Scholar]
- [47]Yogender, P., J. C. Gupta, and K. J. Mukherjee. 2001. Optimizing recombinant protein expression in the T7 system under the control of the proUp promoter. Biotechnol. Lett. 23:41-46. [Google Scholar]
- [48]Yoon, S. H., M. J. Han, S. Y. Lee, K. J. Jeong, and J. S. Yoo. 2003. Combined transcriptome and proteome analysis of Escherichia coli during high cell density culture. Biotechnol. Bioeng. 81:753-767. [DOI] [PubMed] [Google Scholar]
Cited by
Sorted by citations
Evolution of Escherichia coli Expression System in Producing Antibody Recombinant Fragments
Sandomenico, A., Sivaccumar, J. P., & Ruvo, M. (2020) · International Journal of Molecular Sciences · doi:10.3390/ijms21176324 · Cited by 134 · see citing works
- Authors
- Choi, Y. J., Morel, L., Le François, T., Bourque, D., Bourget, L., Groleau, D., Massie, B., & Míguez, C. B.
- Affiliations
- McGill University (CA)
- Microbial and Enzymatic Technology Group
- Biotechnology Research Institute (CA)
- Genomics and Gene Therapy Vectors Group, Bioprocess Centre, Biotechnology Research Institute, National Research Council of Canada, Montréal, Québec H4P 2R2, Canada
- Corresponding author
- Míguez, Carlos B.
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2010-08
- Volume
- 76
- Issue
- 15
- Pages
- 5058-5066
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- PMC
- PMC2916507
- OpenAlex
- W2134174762
- Cited by
- 94
- References
- 4
- Citations by year
- 2026: 8 · 2025: 5 · 2024: 9 · 2023: 2 · 2022: 10 · 2021: 7 · 2020: 6 · 2019: 8 · 2018: 9 · 2017: 1 · 2016: 4 · 2015: 11 · 2014: 5 · 2013: 7 · 2012: 2
- FWCI
- 1.62
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Applied and Environmental Microbiology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- NPARC (submittedVersion)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Microbial Metabolic Engineering and Bioproduction
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Keywords
- transcriptional regulation, inducible expression system, recombinant protein expression, fed-batch fermentation, Escherichia coli
- MeSH terms
- Benzoates, Cloning, Molecular, Escherichia coli, Genetic Engineering, Genetic Vectors, Pseudomonas, Recombinant Proteins, Transcriptional Activation, Gene Expression, Gene Expression Regulation, Bacterial, Pseudomonas putida
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review