The DOI matches its Crossref record; the references it cites are not checked yet.
Desulfotomaculum and Methanobacterium spp. Dominate a 4- to 5-Kilometer-Deep Fault
Open accessAbstract
Alkaline, sulfidic, 54 to 60°C, 4 to 53 million-year-old meteoric water emanating from a borehole intersecting quartzite-hosted fractures >3.3 km beneath the surface supported a microbial community dominated by a bacterial species affiliated with Desulfotomaculum spp. and an archaeal species related to Methanobacterium spp. The geochemical homogeneity over the 650-m length of the borehole, the lack of dividing cells, and the absence of these microorganisms in mine service water support an indigenous origin for the microbial community. The coexistence of these two microorganisms is consistent with a limiting flux of inorganic carbon and SO 4 2− in the presence of high pH, high concentrations of H 2 and CH 4 , and minimal free energy for autotrophic methanogenesis. Sulfide isotopic compositions were highly enriched, consistent with microbial SO 4 2− reduction under hydrologic isolation. An analogous microbial couple and similar abiogenic gas chemistry have been reported recently for hydrothermal carbonate vents of the Lost City near the Mid-Atlantic Ridge (D. S. Kelly et al., Science 307: 1428-1434, 2005), suggesting that these features may be common to deep subsurface habitats (continental and marine) bearing this geochemical signature. The geochemical setting and microbial communities described here are notably different from microbial ecosystems reported for shallower continental subsurface environments.
Overview
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
Sulfate reducers, acetogens and methanogens appear to be the most common inhabitants of ecosystems situated deep within the crust.
“Sulfate reducers, acetogens and methanogens appear to be the most common inhabitants of ecosystems situated deep within the crust [184–188].”
From Early bioenergetic evolution (2013) · cites this paper as [184]
Citations
The citation lists haven’t been fetched yet
References 81 · Cited by 177
Research works printed but not linked: 65
- 10.1093/nar/25.17.3389 · DOI · Paper page
- 10.1128/AEM.69.9.5512-5518.2003 · DOI
- 10.1046/j.1462-2920.2003.00408.x · DOI
- 10.1007/BF02097406 · DOI
- 10.1126/science.1109849 · DOI
- 10.1007/BF01581985 · DOI
- 10.1128/AEM.67.4.1893-1901.2001 · DOI
- 10.4319/lo.1998.43.7.1565 · DOI
- 10.1093/nar/gkg039 · DOI
- 10.1111/j.1574-6976.1997.tb00327.x · DOI
- 10.1126/science.1075653 · DOI
- 10.1126/science.133.3465.1702 · DOI
- Cussler E. L. 1984. Diffusion mass transfer in fluid systems. Cambridge University Press Cambridge United Kingdom.
- 10.1073/pnas.89.12.5685 · DOI
- 10.1126/science.1101155 · DOI · Paper page
- 10.1016/S0899-5362(97)00030-4 · DOI
- Fredrickson, J. K., and T. C. Onstott. 1996. Microbes deep inside the Earth. Sci. Am.275:68-73.
- 10.1128/aem.63.4.1498-1504.1997 · DOI
- 10.1073/pnas.89.13.6045 · DOI
- 10.1128/aem.62.2.668-675.1996 · DOI
- 10.1080/014904599270541 · DOI
- 10.1111/j.1574-6941.2001.tb00879.x · DOI
- 10.1093/bioinformatics/bth226 · DOI
- 10.1093/bioinformatics/17.8.754 · DOI · Paper page
- 10.1128/AEM.66.8.3608-3615.2000 · DOI
- 10.1038/415454a · DOI
- 10.1029/JB093iB04p03243 · DOI
- Kieft, T. L., and T. J. Phelps. 1997. Life in the slow lane: activities of microorganisms in the subsurface, p. 137-164. In P. S. Amy and D. L. Haldeman (ed.), The microbiology of the terrestrial deep subsurface. CRC Lewis Publishers, Boca Raton, Fla.
- Kotelnikova, S., and K. Pedersen. 1998. Distribution and activity of methanogens and homoacetogens in deep granitic aquifers at Aspo Hard Rock Laboratory, Sweden. FEMS Microbiol. Ecol.26:121-134.
- Lane, D. J. 1991. 16S/23S rRNA sequencing, p. 115-175. In E. Stackebrandt and M. Goodfellow (ed.), Nucleic acid techniques in bacterial systematics. John Wiley and Sons, New York, N.Y.
- 10.1029/2004GC000907 · DOI
- 10.1016/S0016-7037(03)00414-9 · DOI
- 10.1021/es00056a005 · DOI
- Majoube, M. 1971. Fractionnement en oxygene-18 et en deuterium entre l'eau et sa vapeur. J. Chem. Phys.197:1423-1436.
- 10.1016/0022-1694(83)90048-3 · DOI
- 10.1016/S1389-1723(00)80079-1 · DOI
- Moser, D. P., H. W. Martin, and P. J. Boston. 2002. Microbiological sampling in caves and mines, p. 821-835. In G. E. Bitton (ed.), Encyclopedia of environmental microbiology. John Wiley and Sons, Inc., New York, N.Y.
- 10.1080/713851170 · DOI
- 10.1099/00207713-46-2-397 · DOI
- 10.1046/j.1468-8123.2003.00050.x · DOI
- Onstott, T. C. 2004. Impact of CO2 injections on deep subsurface microbial ecosystems and potential ramifications for the surface biosphere, p. 1207-1239. In D. C. Thomas and S. M. Benson (ed.), The CO2 capture and storage project, vol. II. Elsevier, New York, N.Y.
- 10.1046/j.1462-2920.2003.00512.x · DOI
- 10.1080/01490459809378088 · DOI
- 10.1128/AEM.66.2.700-711.2000 · DOI
- Parkes, R. J., B. A. Cragg, and P. Wellsbury. 1999. Recent studies on bacterial populations and processes in subseafloor sediments: a review. Hydrogeol. J.8:11-28.
- 10.1111/j.1574-6976.1997.tb00325.x · DOI
- 10.1016/S0167-7012(97)00066-3 · DOI
- 10.1007/BF00662027 · DOI
- 10.1099/00207713-52-2-391 · DOI
- 10.1021/cr950058 · DOI
- Reysenbach, A.-L., D. Gotz, and D. Yernool. 2002. Microbial diversity of marine and terrestrial thermal springs, p. 345-421. In J. T. Staley and A.-L. Reysenbach (ed.), Biodiversity of microbial life. Wiley-Liss, Inc., New York, N.Y.
- 10.1016/0169-1368(95)00011-9 · DOI
- 10.1128/mmbr.61.2.262-280.1997 · DOI · Paper page
- 10.1128/AEM.66.7.2934-2942.2000 · DOI
- 10.1007/s002480000070 · DOI
- 10.1038/416522a · DOI
- 10.1126/science.270.5235.450 · DOI
- 10.1016/0014-5793(83)80473-6 · DOI
- 10.1128/AEM.67.21.5750-5760.2001 · DOI
- 10.1128/AEM.65.6.2471-2477.1999 · DOI
- 10.1128/JB.180.11.2975-2982.1998 · DOI
- 10.1016/j.gca.2004.02.020 · DOI
- White, D. C., and D. B. Ringelberg. 1998. Signature lipid biomarker analysis, p. 255-272. In R. S. Burlage et al. (ed.), Techniques in microbial ecology. Oxford University Press, New York, N.Y.
- Widdel, F. 1988. Microbiology of sulfate- and sulfur-reducing bacteria, p. 469-585. In A. J. B. Zehnder (ed.), Biology of anaerobic microorganisms. Wiley and Sons, New York, N.Y.
- 10.1007/BF00446665 · DOI
Metadata
- Authors
- Moser, D. P., Gihring, T. M., Brockman, F. J., Fredrickson, J. K., Balkwill, D. L., Dollhopf, M. E., Lollar, B. S., Pratt, L. M., Boice, E., Southam, G., Wanger, G., Baker, B. J., Pfiffner, S. M., Lin, L.-H., & Onstott, T. C.
- Affiliations
- Pacific Northwest National Laboratory (US)
- Florida State University (US)
- University of Toronto (CA)
- Indiana University Bloomington (US)
- Western University (CA)
- University of California, Berkeley (US)
- University of Tennessee at Knoxville (US)
- Princeton University (US)
- ORCID
- Venue
- Applied and Environmental Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2005-12
- Volume
- 71
- Issue
- 12
- Pages
- 8773-8783
- ISSN
- 0099-2240 (ISSN-L)
- 1098-5336
- PMC
- PMC1317344
- OpenAlex
- W2109725003
- Cited by
- 177
- References
- 81
- Citations by year
- 2026: 4 · 2025: 6 · 2024: 7 · 2023: 6 · 2022: 4 · 2021: 8 · 2020: 8 · 2019: 11 · 2018: 15 · 2017: 11 · 2016: 8 · 2015: 8 · 2014: 13 · 2013: 11 · 2012: 9
- FWCI
- 6.32
- Type
- journal article
- Language
- en
- Open access
- green
- europepmc.org
- Locations
- Applied and Environmental Microbiology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation (9714214)
- National Aeronautics and Space Administration (NNA04CC03A)
- NASA Astrobiology Institute
- Topics
- Physical Sciences › Environmental Science › Environmental Chemistry › Methane Hydrates and Related Phenomena
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Physical Sciences › Environmental Science › Environmental Engineering › Microbial Fuel Cells and Bioremediation
- Keywords
- Desulfotomaculum, Methanobacterium, sulfide oxidation, methanogenesis, microbial sulfate reduction, hydrogenotrophic methanogenesis, indigenous microbial communities, inorganic carbon limitation
- MeSH terms
- Phylogeny, RNA, Bacterial, RNA, Ribosomal, 16S, Water Microbiology, Polymerase Chain Reaction, Methanobacterium, Geologic Sediments, Desulfotomaculum
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review