The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Energetics of syntrophic cooperation in methanogenic degradation
Abstract
Fatty acids and alcohols are key intermediates in the methanogenic degradation of organic matter, e.g., in anaerobic sewage sludge digestors or freshwater lake sediments. They are produced by classical fermenting bacteria for disposal of electrons derived in simultaneous substrate oxidations. Methanogenic bacteria can degrade primarily only one-carbon compounds. Therefore, acetate, propionate, ethanol, and their higher homologs have to be fermented further to one-carbon compounds. These fermentations are called secondary or syntrophic fermentations. They are endergonic processes under standard conditions and depend on intimate coupling with methanogenesis. The energetic situation of the prokaryotes cooperating in these processes is problematic: the free energy available in the reactions for total conversion of substrate to methane attributes to each partner amounts of energy in the range of the minimum biochemically convertible energy, i.e., 20 to 25 kJ per mol per reaction. This amount corresponds to one-third of an ATP unit and is equivalent to the energy required for a monovalent ion to cross the charged cytoplasmic membrane. Recent studies have revealed that syntrophically fermenting bacteria synthesize ATP by substrate-level phosphorylation and reinvest part of the ATP-bound energy into reversed electron transport processes, to release the electrons at a redox level accessible by the partner bacteria and to balance their energy budget. These findings allow us to understand the energy economy of these bacteria on the basis of concepts derived from the bioenergetics of other microorganisms.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The minimum amount of energy required to drive metabolism in actively growing microbial populations is generally accepted to be about −20 kJ/mol.
“This threshold is generally accepted to be about −20 kJ/mol in actively growing microbial populations, which is approximately 1/3 of the −70 kJ/mol required to build 1 mol of ATP, the molecule that stores energy in all known Earth life (Schink, 1997).”
From The Astrobiology Primer v2.0 (2016) · cites this paper as Schink, 1997
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Energy conservation in chemotrophic anaerobic bacteria
Thauer, R. K., Jungermann, K., & Decker, K. (1977) · Bacteriological Reviews · doi:10.1128/br.41.1.100-180.1977 · Cited by 4,146
Flagged first, then by citations
Research works printed but not linked: 29
- In T. Hattori, Y. Ishida, Y. Maruyama, R. Y. Morita, and A. Uchida (ed.), Recent advances in microbial ecology. Japan Scientific Soci- eties Press, Tokyo, Japan.
- Dimroth, K. 1983. Thermochemische Daten organischer Verbindungen, p. 997-1038. In D'ans-Lax Taschenbuch fu ¨r Chemiker und Physiker, Bd. 2. Springer-Verlag, Berlin, Germany.
- In A. J. B. Zehnder (ed.), Biology of anaerobic microorganisms. John Wiley & Sons, Inc., New York, N.Y.
- Do ¨rner, C. 1992. Biochemie und Energetik der Wasserstofffreisetzung in der syntrophen Verga ¨rung von Fettsa ¨uren und Benzoat. Ph.D. thesis. Uni- versita ¨t Tu ¨bingen, Tu ¨bingen, Germany.
- Dubourguier, H. C., G. Prensier, and G. Albagnac. 1988. Structure and microbial activities of granular anaerobic sludge, p. 18-33. In G. Lettinga et al. (ed.), Granular anaerobic sludge: microbiology and technology. Pudoc, Wageningen, The Netherlands.
- Friedrich, M., N. Springer, W. Ludwig, and B. Schink. Phylogenetic posi- tion of Desulfofustis glycolicus gen. nov. sp. nov. and Syntrophobotulus gly- colicus gen. nov. sp. nov., two strict anaerobes growing with glycolic acid. Int. J. Syst. Bacteriol. 46:1065-1069.
- Fuchs, G. M., E. S. Mohamed, U. Altenschmidt, J. Roch, A. Lach, R. Brackmann, C. Lockmeyer, and B. Oswald. 1994. Biochemistry of anaero- bic biodegradation of aromatic compounds, p. 513-553. In C. Ratledge (ed.), Biochemistry of microbial degradation. Kluwer Academic Publishers, Dordrecht, The Netherlands.
- Hauschild, E. 1997. Biochemie und Energetik der syntrophen Oxidation von Ethanol durch Pelobacter acetylenicus. Ph.D. thesis. Universita ¨t Kon- stanz, Konstanz, Germany.
- Lange, N. A. 1967. Handbook of chemistry. McGraw-Hill Book Co., New York, N.Y.
- In J. S. Poindexter and E. R. Leadbetter (ed.), Bac- teria in nature, vol. 2. Plenum Press, New York, N.Y.
- In A. J. B. Zehnder (ed.), Biology of anaerobic microorganisms. John Wiley & Sons, Inc., New York, N.Y.
- Mitchell, P. 1966. Chemiosmotic coupling in oxidative and photosynthetic phosphorylation. Biol. Rev. Cambridge Philos. Soc. 41:445-502.
- Pfennig, N. 1980. Syntrophic mixed cultures and symbiontic consortia with phototrophic bacteria: a review, p. 127-131.
- In G. Gottschalk et al. (ed.), Anaerobes and anaerobic infections. Fischer, Stuttgart, Germany.
- Rozanova, E. P., A. S. Galushko, and T. N. Nazina. 1990. An acetate decomposing sulfidogenic syntrophic association, p. 469-470. In J. P. Be- laich, M. Bruschi, and J.-L. Garcia (ed.), Microbiology and biochemistry of strict anaerobes involved in interspecies hydrogen transfer. Plenum Press, New York, N.Y.
- Schink, B. 1990. Conservation of small amounts of energy in fermenting bacteria, p. 63-89. In R. K. Finn and P. Pra ¨ve (ed.), Biotechnology, focus 2. Hanser Publishers, Munich, Germany.
- In A. Balows, H. G. Tru ¨per, M. Dworkin, and K. H. Schleifer (ed.), The prokaryotes, 2nd ed. Springer-Verlag, New York, N.Y.
- In H. L. Drake (ed.), Acetogenesis. Chapman & Hall, New York, N.Y.
- Schink, B., and R. K. Thauer. 1988. Energetics of syntrophic methane formation and the influence of aggregation, p. 5-17. In G. Lettinga et al. (ed.), Granular anaerobic sludge: microbiology and technology. Pudoc, Wageningen, The Netherlands. 100.
- Schink, B., A. Brune, and S. Schnell. 1992. Anaerobic degradation of aromatic compounds, p. 219-242. In G. Winkelmann (ed.), Microbial deg- radation of natural products. VCH Verlagsgesellschaft, Weinheim, Ger- many. 101.
- Schmidt, J. E., and B. K. Ahring. 1993. Effects of hydrogen and formate on the degradation of propionate and butyrate in thermophilic granules from an upflow anaerobic sludge blanket reactor. Appl. Environ. Microbiol. 59:2546-2551. 102. Schnu ¨rer, A., F. P. Houwen, and B. H. Svensson. 1994. Mesophilic syntro- phic acetate oxidation during methane formation by a triculture at high ammonium concentration. Arch. Microbiol. 162:70-74. 102a.Schnu ¨rer, A., and B. Schink. Unpublished data. 103. Schnu ¨rer, A., B. Schink, and B. H. Svensson. 1996. Clostridium ultunense sp. nov., a mesophilic bacterium oxidizing acetate in syntrophic association with a hydrogenotrophic methanogenic bacterium. Int. J. Syst. Bacteriol. 46:1145-1152. 104. Scho ¨cke, L., and B. Schink. Energetics of methanogenic benzoate degra- dation by Syntrophus gentianae in syntrophic coculture. Microbiology, in press. 105.
- In T. Hattori, Y. Ishida, Y. Maruyama, R. Y. Morita, and A. Uchida (ed.), Recent advances in microbial ecology. Japan Scientific Societies Press, Tokyo, Japan. 113.
- In D. P. Kelly and N. G. Carr (ed.), The microbe 1984. II. Prokaryotes and eukaryotes. Cambridge Uni- versity Press, Cambridge, United Kingdom. 119.
- In L. E. Erickson and D. Y.-C. Fung (ed.), Handbook on anaerobic fermentations. Marcel Dekker, Inc., New York, N.Y. 121.
- Wallrabenstein, C., N. Gorny, N. Springer, W. Ludwig, and B. Schink. 1995. Pure culture of Syntrophus buswellii, definition of its phylogenetic status, and description of Syntrophus gentianae sp. nov. Syst. Appl. Microbiol. 18:62-66. 132.
- In A. J. B. Zehnder (ed.), Biology of anaerobic mi- croorganisms. John Wiley & Sons, Inc., New York, N.Y. 134.
- In A. T. Bull and J. H. Slater (ed.), Microbial interactions and communities, vol. 1. Academic Press, Ltd., London, United Kingdom. 137. Wu, W.-M., M. K. Jain, R. F. Hickey, and J. G. Zeikus. 1991. Character- ization of metabolic performance of methanogenic granules treating brew- ery wastewater: role of sulfate-reducing bacteria. Appl. Environ. Microbiol. 57:3438-3449. 138. Wu, W.-M., R. F. Hickey, M. Jain, and J. G. Zeikus. 1993. Energetics and regulations of formate and hydrogen metabolism by Methanobacterium formicicum. Arch. Microbiol. 159:57-65. 139. Wu, W.-M., M. K. Jain, R. F. Hickey, and J. G. Zeikus. 1994. Anaerobic degradation of normal-and branched-chain fatty acids with four or more carbons to methane by a syntrophic methanogenic triculture. Appl. Envi- ron. Microbiol. 57:2220-2226. 140. Wu, W.-M., M. K. Jain, R. F. Hickey, and J. G. Zeikus. 1996. Formation of fatty acid-degrading, anaerobic granules by defined species. Appl. Environ. Microbiol. 62:2037-2044. 141. Wu, W.-M., M. K. Jain, R. F. Hickey, and J. G. Zeikus. Perturbation of syntrophic isobutyrate and butyrate degradation with formate and hydro- gen. Biotechnol. Bioeng., in press. 142.
- In R. Mitchell (ed.), Water pollution microbiology, vol. 2. John Wiley & Sons, Ltd., London, United Kingdom. 143.
- Zehnder, A. J. B., and T. D. Brock. 1979. Methane formation and methane oxidation by methanogenic bacteria. J. Bacteriol. 137:420-432. 144. Zehnder, A. J. B., K. Ingvorsen, and T. Marti. 1982. Microbiology of methane bacteria, p. 45-68. In D. E. Hughes et al. (ed.), Anaerobic diges- tion. Elsevier Biomedical Press, Amsterdam, The Netherlands. 145.
Cited by
Sorted by citations
Biochar effects on soil biota – A review
Lehmann, J., Rillig, M. C., Thies, J., Masiello, C. A., Hockaday, W. C., & Crowley, D. (2011) · Soil Biology and Biochemistry · doi:10.1016/j.soilbio.2011.04.022 · Cited by 5,074
Human gut microbiota in obesity and after gastric bypass
Zhang, H., DiBaise, J. K., Zuccolo, A., Kudrna, D., Braidotti, M., Yu, Y., Parameswaran, P., Crowell, M. D., Wing, R., Rittmann, B. E., et al. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0812600106 · Cited by 1,880
Quantifying the degradation of organic matter in marine sediments: A review and synthesis
Arndt, S., Jørgensen, B. B., LaRowe, D. E., Middelburg, J. J., Pancost, R. D., & Regnier, P. (2013) · Earth-Science Reviews · doi:10.1016/j.earscirev.2013.02.008 · Cited by 1,040
Thinking about Bacterial Populations as Multicellular Organisms
Shapiro, J. A. (1998) · Annual Review of Microbiology · doi:10.1146/annurev.micro.52.1.81 · Cited by 876
On the origin of biochemistry at an alkaline hydrothermal vent
Martin, W., & Russell, M. J. (2007) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2006.1881 · Cited by 771
Saady, N. M. C. (2013) · International Journal of Hydrogen Energy · doi:10.1016/j.ijhydene.2013.07.122 · Cited by 533
Merlin Christy, P., Gopinath, L. R., & Divya, D. (2014) · Renewable and Sustainable Energy Reviews · doi:10.1016/j.rser.2014.03.010 · Cited by 463
Canfield, D. E., Rosing, M. T., & Bjerrum, C. (2006) · Philosophical Transactions of the Royal Society B: Biological Sciences · doi:10.1098/rstb.2006.1906 · Cited by 417
Heising, S., Richter, L., Ludwig, W., & Schink, B. (1999) · Archives of Microbiology · doi:10.1007/s002030050748 · Cited by 218
Self-citationSteinbusch, K. J. J., Hamelers, H. V. M., & Buisman, C. J. N. (2008) · Water Research · doi:10.1016/j.watres.2008.05.032 · Cited by 190
Schönheit, P., Buckel, W., & Martin, W. F. (2016) · Trends in Microbiology · doi:10.1016/j.tim.2015.10.003 · Cited by 156
Geological and geochemical controls on subsurface microbial life in the Samail ophiolite, Oman
Rempfert, K. R., Miller, H. M., Bompard, N., Nothaft, D., Matter, J. M., Kelemen, P., Fierer, N., & Templeton, A. S. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00056 · Cited by 157
Domagal-Goldman, S. D., Wright, K. E., Domagal-Goldman, S. D., Wright, K. E., Adamala, K., Arina de la Rubia, L., Bond, J., Dartnell, L. R., Goldman, A. D., Lynch, K., et al. (2016) · Astrobiology · doi:10.1089/ast.2015.1460 · Cited by 136
“This threshold is generally accepted to be about -20 kJ/mol in actively growing microbial populations, which is approximately 1/3 of the -70 kJ/mol required to build 1 mol of ATP, the molecule that stores energy in all known Earth life (Schink, 1997).”
Life Close to the Thermodynamic Limit: How Methanogenic Archaea Conserve Energy
Deppenmeier, U., & Müller, V. (2007) · Results and Problems in Cell Differentiation · doi:10.1007/400_2006_026 · Cited by 132
The energy expansions of evolution
Judson, O. P. (2017) · Nature Ecology & Evolution · doi:10.1038/s41559-017-0138 · Cited by 118
Ikeda-Ohtsubo, W., Brugman, S., Warden, C. H., Rebel, J. M. J., Folkerts, G., & Pieterse, C. M. J. (2018) · Frontiers in Nutrition · doi:10.3389/fnut.2018.00090 · Cited by 115
Nothaft, D. B., Templeton, A. S., Rhim, J. H., Wang, D. T., Labidi, J., Miller, H. M., Boyd, E. S., Matter, J. M., Ono, S., Young, E. D., et al. (2021) · Journal of Geophysical Research: Biogeosciences · doi:10.1029/2020jg006025 · Cited by 44
Zhu, X., Chen, L., Chen, Y., Cao, Q., Liu, X., & Li, D. (2020) · Energy · doi:10.1016/j.energy.2020.117368 · Cited by 41
Energy sources, self-organization, and the origin of life
Boiteau, L., & Pascal, R. (2011) · Origins of Life and Evolution of Biospheres · doi:10.1007/s11084-010-9209-y · Cited by 37
Constraints on hydrogen levels in the Archean atmosphere based on detrital magnetite
Kadoya, S., & Catling, D. C. (2019) · Geochimica et Cosmochimica Acta · doi:10.1016/j.gca.2019.07.041 · Cited by 16
Metadata
- Authors
- Schink, B.
- Affiliations
- Fakultät für Biologie, Universität Konstanz, Germany. bernhard.schink@uni-konstanz.dc
- Venue
- Microbiology and Molecular Biology Reviews
- Publisher
- American Society for Microbiology
- Published
- 1997-06
- Volume
- 61
- Issue
- 2
- Pages
- 262-280
- ISSN
- 1092-2172
- 1098-5557
- Cited by
- 177
- References
- 1
- Language
- en
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review