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Reciprocal Regulation of Anaerobic and Aerobic Cell Wall Mannoprotein Gene Expression in Saccharomyces cerevisiae
Open accessAbstract
The DAN/TIR genes encode nine cell wall mannoproteins in Saccharomyces cerevisiae which are expressed during anaerobiosis (DAN1, DAN2, DAN3, DAN4, TIR1, TIR2, TIR3, TIR4, and TIP1). Most are expressed within an hour of an anaerobic shift, but DAN2 and DAN3 are expressed after about 3 h. At the same time, CWP1 and CWP2, the genes encoding the major mannoproteins, are down-regulated, suggesting that there is a programmed remodeling of the cell wall in which Cwp1 and Cwp2 are replaced by nine anaerobic counterparts. TIP1, TIR1, TIR2, and TIR4 are also induced during cold shock. Correspondingly, CWP1 is down-regulated during cold shock. As reported elsewhere, Mox4 is a heme-inhibited activator, and Mot3 is a heme-induced repressor of the DAN/TIR genes (but not of TIP1). We show that CWP2 (but not CWP1) is controlled by the same factors, but in reverse fashion-primarily by Mot3 (which can function as either an activator or repressor) but also by Mox4, accounting for the reciprocal regulation of the two groups of genes. Disruptions of TIR1, TIR3, or TIR4 prevent anaerobic growth, indicating that each protein is essential for anaerobic adaptation. The Dan/Tir and Cwp proteins are homologous, with the greatest similarities shown within three subgroups: the Dan proteins, the Tip and Tir proteins, and, more distantly, the Cwp proteins. The clustering of homology corresponds to differences in expression: the Tip and Tir proteins are expressed during hypoxia and cold shock, the Dan proteins are more stringently repressed by oxygen and insensitive to cold shock, and the Cwp proteins are oppositely regulated by oxygen and temperature.
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“In addition, to limit Ecm22 function [75], the transcriptional factor Mot3 also represses the expression of hypoxic, DAN/TIR/PAU and ERG genes including ERG2, ERG6 and ERG9 (Figure 3A) [86,89,90,91,92,93].”
From Regulation of Ergosterol Biosynthesis in Saccharomyces cerevisiae (2020) · cites this paper as [91]
Citations
Cites
Gietz, R. D., & Sugino, A. (1988) · Gene · doi:10.1016/0378-1119(88)90185-0 · Cited by 2,851
Construction of a set of convenient saccharomyces cerevisiae strains that are isogenic to S288C
Winston, F., Dollard, C. A., & Ricupero‐Hovasse, S. L. (1995) · Yeast · doi:10.1002/yea.320110107 · Cited by 949
Molecular basis of cell integrity and morphogenesis in Saccharomyces cerevisiae
Cid, V. J., Durán, A., del Rey, F., Snyder, M. P., Nombela, C., & Sánchez, M. (1995) · Microbiological Reviews · doi:10.1128/mr.59.3.345-386.1995 · Cited by 464
Lussier, M., White, A.-M., Sheraton, J., DiPaolo, T., Treadwell, J. A., Southard, S. B., Horenstein, C. I., Chen-Weiner, J., Ram, A. F. J., Kapteyn, J. C., et al. (1997) · Genetics · doi:10.1093/genetics/147.2.435 · Cited by 369
Zlotnik, H., Fernandez, M. P., Bowers, B., & Cabib, E. (1984) · Journal of Bacteriology · doi:10.1128/jb.159.3.1018-1026.1984 · Cited by 326
P., L. H., Tettelin, H., Vossen, J. H., Ram, A. F. J., ENDE, H. V. D., & Klis, F. M. (1997) · Yeast · doi:10.1002/(sici)1097-0061(199712)13:15 · Cited by 325
The glucanase‐soluble mannoproteins limit cell wall porosity in Saccharomyces cerevisiae
Nobel, J. G. D., Klis, F. M., Priem, J., Munnik, T., & ENDE, H. V. D. (1990) · Yeast · doi:10.1002/yea.320060606 · Cited by 248
Lambrechts, M. G., Bauer, F. F., Marmur, J., & Pretorius, I. S. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.16.8419 · Cited by 244
Identification of three mannoproteins in the cell wall of Saccharomyces cerevisiae
van der Vaart, J. M., P., L. H., Chapman, J. W., Klis, F. M., & Verrips, C. T. (1995) · Journal of Bacteriology · doi:10.1128/jb.177.11.3104-3110.1995 · Cited by 240
Ram, A. F. J., Kapteyn, J. C., Montijn, R. C., Caro, L. H. P., Douwes, J. E., Baginsky, W., Mazur, P., van den Ende, H., & Klis, F. M. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.6.1418-1424.1998 · Cited by 200
Roy, A., Lu, C. F., Marykwas, D. L., Lipke, P. N., & Kurjan, J. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.8.4196 · Cited by 161
Disruption of the Gene Encoding the Acyl-CoA-binding Protein ( ) Perturbs Acyl-CoA Metabolism in
Schjerling, C. K., Hummel, R., Hansen, J. K., Børsting, C., Mikkelsen, J. M., Kristiansen, K., & Knudsen, J. (1996) · Journal of Biological Chemistry · doi:10.1074/jbc.271.37.22514 · Cited by 129
Abramova, N. E., Cohen, B. D., Sertil, O., Kapoor, R., Davies, K. J. A., & Lowry, C. V. (2001) · Genetics · doi:10.1093/genetics/157.3.1169 · Cited by 128
Self-citationCrowley, J. H., Leak, F. W., Shianna, K. V., Tove, S., & Parks, L. W. (1998) · Journal of Bacteriology · doi:10.1128/jb.180.16.4177-4183.1998 · Cited by 123
Oxygen regulation of anaerobic and aerobic genes mediated by a common factor in yeast.
Lowry, C. V., & Zitomer, R. S. (1984) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.81.19.6129 · Cited by 121
Self-citationTIP 1, a cold shock-inducible gene of Saccharomyces cerevisiae.
Kondô, K., & Inouye, M. (1991) · Journal of Biological Chemistry · doi:10.1016/s0021-9258(19)47405-x · Cited by 117
ROX1 Encodes a Heme-Induced Repression Factor Regulating ANB1 and CYC7 of Saccharomyces cerevisiae
Lowry, C. V., & Zitomer, R. S. (1988) · Molecular and Cellular Biology · doi:10.1128/mcb.8.11.4651 · Cited by 116
Self-citationKeng, T. (1992) · Molecular and Cellular Biology · doi:10.1128/mcb.12.6.2616-2623.1992 · Cited by 101
Deckert, J., Perini, R. F., Balasubramanian, B., & Zitomer, R. S. (1995) · Genetics · doi:10.1093/genetics/139.3.1149 · Cited by 101
Is there a role for GPIs in yeast cell-wall assembly?
de Nobel, H., & Lipke, P. N. (1994) · Trends in Cell Biology · doi:10.1016/0962-8924(94)90003-5 · Cited by 100
Kowalski, L. R. Z., Kondô, K., & Inouye, M. (1995) · Molecular Microbiology · doi:10.1111/j.1365-2958.1995.tb02248.x · Cited by 92
Cohen, B. D. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.3.799 · Cited by 88
The yeast cell wall, a dynamic structure engaged in growth and morphogenesis
Cabib, E., Drgon, T., Drgonová, J., Ford, R. A., & KOLLÁR, R. (1997) · Biochemical Society Transactions · doi:10.1042/bst0250200 · Cited by 65
Shimoi, H., Iimura, Y., & OBATA, T. (1995) · The Journal of Biochemistry · doi:10.1093/oxfordjournals.jbchem.a124907 · Cited by 60
Grishin, A., Rothenberg, M. E., Downs, M. A., & Blumer, K. (1998) · Genetics · doi:10.1093/genetics/149.2.879 · Cited by 57
Viswanathan, M., Muthukumar, G., Cong, Y.-S., & Lenard, J. (1994) · Gene · doi:10.1016/0378-1119(94)90249-6 · Cited by 56
Donzeau, M., Bourdineaud, J., & Lauquin, G. J. ‐. (1996) · Molecular Microbiology · doi:10.1111/j.1365-2958.1996.tb02631.x · Cited by 52
Sertil, O., Cohen, B. D., Davies, K. J. A., & Lowry, C. V. (1997) · Gene · doi:10.1016/s0378-1119(97)00028-0 · Cited by 50
Self-citationRoy, A., Lu, C. F., Marykwas, D. L., Lipke, P. N., & Kurjanh, J. (1991) · Molecular and Cellular Biology · doi:10.1128/mcb.11.8.4196-4206.1991 · Cited by 46
P., L. H., Smits, G. J., van Egmond, P., Chapman, J. W., & Klis, F. M. (1998) · FEMS Microbiology Letters · doi:10.1111/j.1574-6968.1998.tb12967.x · Cited by 41
Functional analysis of the Saccharomyces cerevisiae UBC11 gene
Townsley, F. M., & RUDERMAN, J. V. (1998) · Yeast · doi:10.1002/(sici)1097-0061(19980615)14:8 · Cited by 24
The yeast SRP gene: Positive modulation by glucose of its transcriptional expression
Marguet, D., & Lauquin, G. J. ‐. (1986) · Biochemical and Biophysical Research Communications · doi:10.1016/0006-291x(86)90279-2 · Cited by 18
Muñoz‐Dorado, J., Kondô, K., Inouye, M., & Sone, H. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.4.560 · Cited by 12
Identification and characterization of the KlCMD1 gene encoding Kluyveromyces lactis calmodulin
Rayner, T. F., & Stark, M. J. R. (1998) · Yeast · doi:10.1002/(sici)1097-0061(19980630)14:9 · Cited by 2
Dörfler, H. ‐., & Fabian, B. (1995) · Journal of Basic Microbiology · doi:10.1002/jobm.3620350402 · Cited by 1
Research works printed but not linked: 2
- Dorfler H. Fabian B. Effect of changes in the lipid composition on the plasma membrane of Saccharomyces cerevisiae through mutation of the phase transition and mixing behavior of the lipid fraction.J. Basic Microbiol.351995207215 (In German.)
- 10.1128/mcb.8.11.4651-4658.1988 · DOI
Cited by
Sorted by citations
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Klis, F. M., Mol, P. C., Hellingwerf, K. J., & Brul, S. (2002) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2002.tb00613.x · Cited by 1,007
A Systematic Survey Identifies Prions and Illuminates Sequence Features of Prionogenic Proteins
Alberti, S., Halfmann, R., King, O. D., Kapila, A., & Lindquist, S. L. (2009) · Cell · doi:10.1016/j.cell.2009.02.044 · Cited by 957
Cell Wall Assembly in Saccharomyces cerevisiae
Lesage, G., & Bussey, H. (2006) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00038-05 · Cited by 849
Cell wall construction in Saccharomyces cerevisiae
Klis, F. M., Boorsma, A., & de Groot, P. W. J. (2006) · Yeast · doi:10.1002/yea.1349 · Cited by 806
Yeast responses to stresses associated with industrial brewery handling: Figure 1
Gibson, B. R., Lawrence, S. J., Leclaire, J. P. R., Powell, C. D., & Smart, K. A. (2007) · FEMS Microbiology Reviews · doi:10.1111/j.1574-6976.2007.00076.x · Cited by 490
Metadata
- Authors
- Abramova, N., Sertil, O., Mehta, S., & Lowry, C. V.
- Affiliations
- Albany Medical College (US)
- Venue
- Journal of Bacteriology
- Publisher
- American Society for Microbiology
- Published
- 2001-05
- Volume
- 183
- Issue
- 9
- Pages
- 2881-2887
- ISSN
- 0021-9193 (ISSN-L)
- 1098-5530
- PMC
- PMC99506
- OpenAlex
- W2141260639
- Cited by
- 157
- References
- 36
- Citations by year
- 2026: 1 · 2025: 5 · 2024: 8 · 2023: 1 · 2022: 6 · 2021: 7 · 2020: 7 · 2019: 6 · 2018: 2 · 2017: 9 · 2016: 1 · 2015: 5 · 2014: 3 · 2013: 11 · 2012: 9
- FWCI
- 2.10
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Bacteriology (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- National Science Foundation
- U.S. Department of State
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Fungal and yeast genetics research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Bacterial Genetics and Biotechnology
- Life Sciences › Immunology and Microbiology › Microbiology › Yeasts and Rust Fungi Studies
- Keywords
- cell wall mannoproteins, TIP1, anaerobic adaptation, hypoxia, cold shock, gene expression regulation, oxygen regulation, reciprocal gene regulation, Saccharomyces cerevisiae, cell wall remodeling, protein homology
- MeSH terms
- Aerobiosis, Anaerobiosis, Cell Wall, Fungal Proteins, Genes, Fungal, Glycoproteins, Heat-Shock Proteins, Membrane Glycoproteins, Membrane Proteins, RNA, Fungal, RNA, Messenger, Saccharomyces cerevisiae, Temperature, Trans-Activators, Down-Regulation, Up-Regulation, Gene Expression Regulation, Fungal, Sequence Homology, Saccharomyces cerevisiae Proteins
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