The DOI matches its Crossref record; 24 of the 25 references it cites were found in a registry or an index.
Molecular analysis of oral and respiratory bacterial species associated with ventilator-associated pneumonia.
Open accessAbstract
Trauma intensive care unit (TICU) patients requiring mechanical respiratory support frequently develop ventilator-associated pneumonia (VAP). Oral and oropharyngeal bacteria are believed to be responsible for many cases of VAP, but definitive evidence of this relationship is lacking. Earlier studies used conventional culture-based methods for identification of bacterial pathogens, but these methods are insufficient, as some bacteria may be uncultivable or difficult to grow. The purpose of this study was to use a culture-independent molecular approach to analyze and compare the bacterial species colonizing the oral cavity and the lungs of TICU patients who developed VAP. Bacterial samples were acquired from the dorsal tongue and bronchoalveolar lavage fluid of 16 patients. Bacterial DNA was extracted, and the 16S rRNA genes were PCR amplified, cloned into Escherichia coli, and sequenced. The sequencing data revealed the following: (i) a wide diversity of bacterial species in both the oral and pulmonary sites, some of them novel; (ii) known and putative respiratory pathogens colonizing both the oral cavity and lungs of 14 patients; and (iii) a number of bacterial pathogens (e.g., Dialister pneumosintes, Haemophilus segnis, Gemella morbillorum, and Pseudomonas fluorescens) in lung samples that had not been reported previously at this site when culture-based methods were used. Our data indicate that the dorsal surface of the tongue serves as a potential reservoir for bacterial species involved in VAP. Furthermore, it is clear that the diversity of bacterial pathogens for VAP is far more complex than the current literature suggests.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
In the citing paper
“Several members of the oral microbiota (e.g., Streptococcus oralis, Prevotella salivae, and Mycoplasma salivarium) have previously been detected by 16S rRNA gene analysis in the BALF samples of VAP patients (Bahrani-Mougeot et al., 2007).”
From Oral Microbiome and SARS-CoV-2: Beware of Lung Co-infection (2020) · cites this paper as Bahrani-Mougeot et al., 2007
In the citing paper
“Many studies have reported that the main pathophysiologic mechanism for VAP development is oropharyngeal colonization (Doré et al., 1996; Bahrani-Mougeot et al., 2007).”
From Oral Microbiome and SARS-CoV-2: Beware of Lung Co-infection (2020) · cites this paper as Bahrani-Mougeot et al., 2007
In the citing paper
“in critically ill patients, healthy oral microbiota are displaced by gram-negative aerobes (figure 1), including prominent members of the Proteobacteria phylum”
From The microbiome and critical illness (2016) · cites this paper as [7]
In the citing paper
“becomes overrun by potentially pathogenic bacteria, including prominent Proteobacteria, such as P aeruginosa and K pneumoniae.”
From The microbiome and critical illness (2016) · cites this paper as [7]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
Saitou, N., & Nei, M. (1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,959
Evolution of Protein Molecules
JUKES, T. H., & CANTOR, C. R. (1969) · Mammalian Protein Metabolism · doi:10.1016/b978-1-4832-3211-9.50009-7 · Cited by 11,032
(1964) · Elsevier eBooks · doi:10.1016/b978-1-4832-3210-2.50006-6 · Cited by 3,130
Ventilator-associated Pneumonia
Chastre, J. E., & Fagon, J.-Y. (2002) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/ajrccm.165.7.2105078 · Cited by 2,884
de Peer, Y. V., & Wächter, R. D. (1994) · Computer applications in the biosciences · doi:10.1093/bioinformatics/10.5.569 · Cited by 2,247
Bacterial Diversity in Human Subgingival Plaque
Paster, B. J., Boches, S. K., Galvin, J. L., Ericson, R. E., Lau, C. N., Levanos, V. A., Sahasrabudhe, A., & Dewhirst, F. E. (2001) · Journal of Bacteriology · doi:10.1128/jb.183.12.3770-3783.2001 · Cited by 2,008
Self-citationLeVine, A. M., Kurak, K. E., Wright, J. R., Watford, W. T., Bruno, M. D., Ross, G. F., Whitsett, J. A., & Korfhagen, T. R. (1999) · American Journal of Respiratory Cell and Molecular Biology · doi:10.1165/ajrcmb.20.2.3303 · Cited by 1,272
Changing Pharyngeal Bacterial Flora of Hospitalized Patients: Emergence of Gram-Negative Bacilli
Johanson, W. G., Pierce, A. K., & Sanford, J. P. (1969) · New England Journal of Medicine · doi:10.1056/nejm196911202812101 · Cited by 910
Invasive and Noninvasive Strategies for Management of Suspected Ventilator-Associated Pneumonia
Fagon, J.-Y., Chastre, J. E., Wolff, M., Gervais, C., Parer, S., Stéphan, F., Similowski, T., Mercat, A., Diehl, J., Sollet, J.-P., et al. (2000) · Annals of Internal Medicine · doi:10.7326/0003-4819-132-8-200004180-00004 · Cited by 844
Fagon, J.-Y., Chastre, J. E., Domart, Y., Trouillet, J., Pierre, J., Darne, C., & Gibert, C. (1989) · American Review of Respiratory Disease · doi:10.1164/ajrccm/139.4.877 · Cited by 819
Bacterial diversity within the human subgingival crevice
Kroes, I., Lepp, P. W., & Relman, D. A. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.25.14547 · Cited by 606
Kazor, C. E., Mitchell, P. M., Lee, A. M., Stokes, L. N., Loesche, W. J., Dewhirst, F. E., & Paster, B. J. (2003) · Journal of Clinical Microbiology · doi:10.1128/jcm.41.2.558-563.2003 · Cited by 533
Self-citationThe Prevention of Ventilator-Associated Pneumonia
Kollef, M. H. (1999) · New England Journal of Medicine · doi:10.1056/nejm199902253400807 · Cited by 498
Factors Predisposing to Oropharyngeal Colonization with Gram-Negative Bacilli in the Aged
Valenti, W. M., Trudell, R. G., & Bentley, D. W. (1978) · New England Journal of Medicine · doi:10.1056/nejm197805182982002 · Cited by 415
Colonization of dental plaque by respiratory pathogens in medical intensive care patients
Scannapieco, F. A., Stewart, E., & Mylotte, J. M. (1992) · Critical Care Medicine · doi:10.1097/00003246-199206000-00007 · Cited by 384
Scannapieco, F. A., & Ho, A. W. (2001) · Journal of Periodontology · doi:10.1902/jop.2001.72.1.50 · Cited by 296
Colonization of dental plaque: A source of nosocomial infections in intensive care unit patients
Fourrier, F., Duvivier, B., Boutigny, H., Roussel‐Delvallez, M., & Chopin, C. (1998) · Critical Care Medicine · doi:10.1097/00003246-199802000-00032 · Cited by 292
Oropharyngeal or Gastric Colonization and Nosocomial Pneumonia in Adult Intensive Care Unit Patients
Garrouste-Orgeas, M., Chevret, S., Arlet, G., MARIE, O., Rouveau, M., POPOFF, N., & Schlemmer, B. (1997) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/ajrccm.156.5.96-04076 · Cited by 292
Pneumonia in Intubated Trauma Patients. Microbiology and Outcomes
Baker, A. M., Meredith, J. W., & Haponik, E. F. (1996) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/ajrccm.153.1.8542141 · Cited by 250
Paster, B. J., & Dewhirst, F. E. (1988) · International Journal of Systematic Bacteriology · doi:10.1099/00207713-38-1-56 · Cited by 215
Self-citationPrevalent Bacterial Species and Novel Phylotypes in Advanced Noma Lesions
Paster, B. J., Falkler, W. A., Enwonwu, C. O., Idigbe, E., Savage, K., Levanos, V. A., Tamer, M. A., Ericson, R. L., Lau, C. N., & Dewhirst, F. E. (2002) · Journal of Clinical Microbiology · doi:10.1128/jcm.40.6.2187-2191.2002 · Cited by 152
Self-citationIncidence of anaerobes in ventilator-associated pneumonia with use of a protected specimen brush.
Doré, P., Robert, R., Grollier, G., Rouffineau, J., Lanquetot, H., Charrière, J. M., & Fauchère, J. L. (1996) · American Journal of Respiratory and Critical Care Medicine · doi:10.1164/ajrccm.153.4.8616556 · Cited by 129
Bacterial Diversity in Necrotizing Ulcerative Periodontitis in HIV‐Positive Subjects
Paster, B. J., Russell, M. K., Alpagot, T., Lee, A. M., Boches, S. K., Galvin, J. L., & Dewhirst, F. E. (2002) · Annals of Periodontology · doi:10.1902/annals.2002.7.1.8 · Cited by 107
Self-citationThe role of oral microbial colonization in ventilator-associated pneumonia
Brennan, M. T., Bahrani‐Mougeot, F. K., Fox, P. C., Kennedy, T. P., Hopkins, S., Boucher, R. C., & Lockhart, P. B. (2004) · Oral Surgery Oral Medicine Oral Pathology Oral Radiology and Endodontology · doi:10.1016/j.tripleo.2004.06.005 · Cited by 65
Self-citation
Flagged first, then by citations
1 of the 25 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Dewhirst, F. E., Chen, T., Izard, J., Paster, B. J., Tanner, A. C. R., Yu, W.-H., Lakshmanan, A., & Wade, W. G. (2010) · Journal of Bacteriology · doi:10.1128/jb.00542-10 · Cited by 3,352
Self-citationInterspecies Interactions within Oral Microbial Communities
Kuramitsu, H. K., He, X., Lux, R., Anderson, M. H., & Shi, W. (2007) · Microbiology and Molecular Biology Reviews · doi:10.1128/mmbr.00024-07 · Cited by 602
The microbiome and critical illness
Dickson, R. P. (2016) · The Lancet Respiratory Medicine · doi:10.1016/s2213-2600(15)00427-0 · Cited by 460
Historical evolution and current status of the taxonomy of genus Pseudomonas
Péix, Á., Ramírez-Bahena, M.-H., & Velázquez, E. (2009) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2009.08.001 · Cited by 324
Scales, B. S., Dickson, R. P., LiPuma, J. J., & Huffnagle, G. B. (2014) · Clinical Microbiology Reviews · doi:10.1128/cmr.00044-14 · Cited by 325
Metadata
- Authors
- Bahrani-Mougeot, F. K., Paster, B. J., Coleman, S., Barbuto, S., Brennan, M. T., Noll, J., Kennedy, T., Fox, P. C., & Lockhart, P. B.
- Affiliations
- Department of Oral Medicine, Carolinas Medical Center, Charlotte, North Carolina
- The Forsyth Institute (US)
- Carolinas Medical Center (US)
- University of Utah (US)
- Venue
- Journal of Clinical Microbiology
- Publisher
- American Society for Microbiology
- Published
- 2007-05
- Volume
- 45
- Issue
- 5
- Pages
- 1588-1593
- ISSN
- 0095-1137 (ISSN-L)
- 1098-660X
- PMC
- PMC1865865
- OpenAlex
- W2069340069
- Cited by
- 176
- References
- 25
- Citations by year
- 2026: 4 · 2025: 4 · 2024: 4 · 2023: 9 · 2022: 10 · 2021: 7 · 2020: 13 · 2019: 8 · 2018: 2 · 2017: 10 · 2016: 10 · 2015: 12 · 2014: 19 · 2013: 13 · 2012: 8
- FWCI
- 9.67
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Clinical Microbiology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Topics
- Health Sciences › Medicine › Critical Care and Intensive Care Medicine › Nosocomial Infections in ICU
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Health Sciences › Medicine › Microbiology (medical) › Bacterial Identification and Susceptibility Testing
- Keywords
- ventilator-associated pneumonia, oral bacteria, oropharyngeal colonization, tongue dorsum, bronchoalveolar lavage, 16S rRNA gene sequencing, bacterial diversity, uncultured bacteria, novel bacterial species, mechanical ventilation, trauma intensive care, bacterial reservoir, Dialister pneumosintes, Gemella morbillorum, Pseudomonas fluorescens
- MeSH terms
- Adult, Bacteria, Female, Humans, Male, Middle Aged, Mouth, Phylogeny, Respiratory System, Species Specificity, Wounds and Injuries, Pneumonia, Bacterial, Pneumonia, Ventilator-Associated
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review