The DOI matches its Crossref record; 33 of the 33 references it cites were found in a registry or an index.
Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis
Open accessAbstract
We analyzed viral nucleic acids in stool samples collected from 35 South Asian children with nonpolio acute flaccid paralysis (AFP). Sequence-independent reverse transcription and PCR amplification of capsid-protected, nuclease-resistant viral nucleic acids were followed by DNA sequencing and sequence similarity searches. Limited Sanger sequencing (35 to 240 subclones per sample) identified an average of 1.4 distinct eukaryotic viruses per sample, while pyrosequencing yielded 2.6 viruses per sample. In addition to bacteriophage and plant viruses, we detected known enteric viruses, including rotavirus, adenovirus, picobirnavirus, and human enterovirus species A (HEV-A) to HEV-C, as well as numerous other members of the Picornaviridae family, including parechovirus, Aichi virus, rhinovirus, and human cardiovirus. The viruses with the most divergent sequences relative to those of previously reported viruses included members of a novel Picornaviridae genus and four new viral species (members of the Dicistroviridae , Nodaviridae , and Circoviridae families and the Bocavirus genus). Samples from six healthy contacts of AFP patients were similarly analyzed and also contained numerous viruses, particularly HEV-C, including a potentially novel Enterovirus genotype. Determining the prevalences and pathogenicities of the novel genotypes, species, genera, and potential new viral families identified in this study in different demographic groups will require further studies with different demographic and patient groups, now facilitated by knowledge of these viral genomes.
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Cites
Metagenomic Analysis of the Human Distal Gut Microbiome
Gill, S. R., Pop, M., DeBoy, R. T., Eckburg, P. B., Turnbaugh, P. J., Samuel, B. S., Gordon, J. I., Relman, D. A., Fraser-Liggett, C. M., & Nelson, K. E. (2006) · Science · doi:10.1126/science.1124234 · Cited by 4,699
Evolution of mammals and their gut microbes
Ley, R. E., Hamady, M., Lozupone, C., Turnbaugh, P. J., Ramey, R. R., Bircher, J. S., Schlegel, M. L., Tucker, T. A., Schrenzel, M. D., Knight, R., et al. (2008) · Science · doi:10.1126/science.1155725 · Cited by 3,747
A Metagenomic Survey of Microbes in Honey Bee Colony Collapse Disorder
Cox-Foster, D. L., Conlan, S., Holmes, E. C., Palacios, G., Evans, J. D., Moran, N. A., Quan, P.-L., Briese, T., Hornig, M., Geiser, D. M., et al. (2007) · Science · doi:10.1126/science.1146498 · Cited by 1,759
Enteroviruses : Polioviruses, Coxsackieviruses, Echoviruses, and Newer Enteroviruses
Pallansch, M. (2001) · Medical Entomology and Zoology · Cited by 890
Oberste, M. S., Maher, K., Kilpatrick, D. R., & Pallansch, M. A. (1999) · Journal of Virology · doi:10.1128/jvi.73.3.1941-1948.1999 · Cited by 866
Metagenomic Analyses of an Uncultured Viral Community from Human Feces
Breitbart, M., Hewson, I., Felts, B., Mahaffy, J. M., Nulton, J., Salamon, P., & Rohwer, F. (2003) · Journal of Bacteriology · doi:10.1128/jb.185.20.6220-6223.2003 · Cited by 830
RNA Viral Community in Human Feces: Prevalence of Plant Pathogenic Viruses
Zhang, T., Breitbart, M., Lee, W. H., Run, J.-Q., Wei, C. L., Soh, S. W. L., Hibberd, M. L., Liu, E. T., Rohwer, F., & Ruan, Y. (2005) · PLoS Biology · doi:10.1371/journal.pbio.0040003 · Cited by 805
Allander, T., Emerson, S. U., Engle, R. E., Purcell, R. H., & Bukh, J. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.211424698 · Cited by 373
Metagenomic Analysis of Human Diarrhea: Viral Detection and Discovery
Finkbeiner, S. R., Allred, A. F., Tarr, P. I., Klein, E. J., Kirkwood, C. D., & Wang, D. (2008) · PLoS Pathogens · doi:10.1371/journal.ppat.1000011 · Cited by 361
Viral diversity and dynamics in an infant gut
Breitbart, M., Haynes, M., Kelley, S., Angly, F., Edwards, R. A., Felts, B., Mahaffy, J. M., Mueller, J., Nulton, J., Rayhawk, S., et al. (2008) · Research in Microbiology · doi:10.1016/j.resmic.2008.04.006 · Cited by 352
Cited by
Asnicar, F., Manara, S., Zolfo, M., Truong, D. T., Scholz, M., Armanini, F., Ferretti, P., Gorfer, V., Pedrotti, A., Tett, A., et al. (2017) · mSystems · doi:10.1128/msystems.00164-16 · Cited by 445
Going viral: next-generation sequencing applied to phage populations in the human gut
Reyes, A., Semenkovich, N. P., Whiteson, K., Rohwer, F., & Gordon, J. I. (2012) · Nature Reviews Microbiology · doi:10.1038/nrmicro2853 · Cited by 441
Victoria, J. G., Wang, C., Jones, M. S., Jaing, C., McLoughlin, K., Gardner, S., & Delwart, E. L. (2010) · Journal of Virology · doi:10.1128/jvi.02690-09 · Cited by 342
Self-citationCharacterization of a canine homolog of hepatitis C virus
Kapoor, A., Simmonds, P., Gerold, G., Qaisar, N., Jain, K., Henriquez, J. A., Firth, C., Hirschberg, D. L., Rice, C. M., Shields, S., et al. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1101794108 · Cited by 288
Self-citationMetagenomic analysis of viruses in reclaimed water
Rosario, K., Nilsson, C., Lim, Y. W., Ruan, Y., & Breitbart, M. (2009) · Environmental Microbiology · doi:10.1111/j.1462-2920.2009.01964.x · Cited by 276
Metadata
- Authors
- Victoria, J. G., Kapoor, A., Li, L., Blinkova, O., Slikas, B., Wang, C., Naeem, A., Zaidi, S., & Delwart, E.
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2009-05
- Volume
- 83
- Issue
- 9
- Pages
- 4642-4651
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- OpenAlex
- W2098407917
- Cited by
- 375
- References
- 33
- FWCI
- 21.78
- Type
- journal article
- Language
- en
- Open access
- green
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- Victoria, J. G., Kapoor, A., Li, L., Blinkova, O., Slikas, B., Wang, C., Naeem, A., Zaidi, S., & Delwart, E. (2009). Metagenomic Analyses of Viruses in Stool Samples from Children with Acute Flaccid Paralysis. Journal of Virology. https://doi.org/10.1128/jvi.02301-08
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