Strict Control of Human Immunodeficiency Virus Type 1 Replication by a Genetic Switch: Tet for Tat
Open accessAbstract
Live-attenuated human immunodeficiency virus type 1 (HIV-1) variants have shown great promise as AIDS vaccines, but continued replication can lead to the selection of faster-replicating variants that are pathogenic. We therefore designed HIV-1 genomes that replicate exclusively upon addition of the nontoxic effector doxycycline (dox). This was achieved by replacement of the viral TAR-Tat system for transcriptional activation by the Escherichia coli-derived Tet system for inducible gene expression. These designer "HIV-rtTA" viruses replicate in a strictly dox-dependent manner both in a T-cell line and in primary blood cells, and the rate of replication can be fine-tuned by simple variation of the dox concentration. These HIV-rtTA viruses provide a tool to perform genetics, e.g., selection and optimization experiments, with the E. coli-derived Tet reagents in a eukaryotic background. Furthermore, such viruses may represent improved vaccine candidates because their replication can be turned on and off at will.
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In the presence of dox, rtTA binds to the tetO-LTR promoter and activates viral transcription, so HIV-rtTA replication can be controlled by the administration of dox.
“In the presence of dox, rtTA will bind to the tetO-LTR promoter and activate viral transcription. HIV-rtTA replication can thus be controlled by the administration of dox (Fig. 3C).”
From Tet-On Systems For Doxycycline-inducible Gene Expression (2016) · cites this paper as [42]
We used the Tet-On system to generate an HIV-1 variant that replicates exclusively in the presence of dox.
“We used the Tet-On system to generate an HIV-1 variant that replicates exclusively in the presence of dox [42].”
From Tet-On Systems For Doxycycline-inducible Gene Expression (2016) · cites this paper as [42]
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Cites
Molecular Cloning: A Laboratory Manual
Sambrook, J., Fritsch, E., & Maniatis, T. (1989) · UCLA - Biblioteca de Ciencias de la Salud · Cited by 133,589 · see citing works
Cold Spring Harbor Laboratory; Cold Spring Harbor, NY
Cavalier-Smith, T. (1980) · FEBS Letters · doi:10.1016/0014-5793(80)80323-1 · Cited by 6,317 · see citing works
Tight control of gene expression in mammalian cells by tetracycline-responsive promoters.
Gossen, M., & Bujard, H. (1992) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.89.12.5547 · Cited by 4,943 · cited 1× · see citing works
“This was done by incorporation of the Tet system for inducible gene expression (5, 23, 24) into the viral genome.”
MethodSelf-citationThe scanning model for translation: an update.
Kozak, M. (1989) · The Journal of Cell Biology · doi:10.1083/jcb.108.2.229 · Cited by 3,485 · see citing works
Transcriptional Activation by Tetracyclines in Mammalian Cells
Gossen, M., Freundlieb, S., Bender, G., Müller, G., Hillen, W., & Bujard, H. (1995) · Science · doi:10.1126/science.7792603 · Cited by 2,488 · cited 1× · see citing works
“This was done by incorporation of the Tet system for inducible gene expression (5, 23, 24) into the viral genome.”
MethodSelf-citationWei, P., Garber, M. E., Fang, S.-M., Fischer, W. H., & Jones, K. A. (1998) · Cell · doi:10.1016/s0092-8674(00)80939-3 · Cited by 1,251 · see citing works
Deacon, N. J., Tsykin, A., Solomon, A., Smith, K. A., Ludford-Menting, M. J., Hooker, D. J., McPhee, D. A., Greenway, A. L., Ellett, A. M., Chatfield, C., et al. (1995) · Science · doi:10.1126/science.270.5238.988 · Cited by 1,152 · see citing works
Protective Effects of a Live Attenuated SIV Vaccine with a Deletion in the nef Gene
Daniel, M. D., Kirchhoff, F., Czajak, S. C., Sehgal, P. K., & Desrosiers, R. C. (1992) · Science · doi:10.1126/science.1470917 · Cited by 1,015 · see citing works
Absence of Intact nef Sequences in a Long-Term Survivor with Nonprogressive HIV-1 Infection
Kirchhoff, F., Greenough, T. C., Brettler, D. B., Sullivan, J. L., & Desrosiers, R. C. (1995) · New England Journal of Medicine · doi:10.1056/nejm199501263320405 · Cited by 1,002 · see citing works
Urlinger, S., Baron, U., Thellmann, M., Hasan, M. T., Bujard, H., & Hillen, W. (2000) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.130192197 · Cited by 928 · see citing works
Self-citationDoxycycline-mediated quantitative and tissue-specific control of gene expression in transgenic mice.
Kistner, A., Gossen, M., Zimmermann, F., Jerecic, J., Ullmer, C., Lübbert, H., & Bujard, H. (1996) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.93.20.10933 · Cited by 780 · see citing works
Self-citationTrans-activation of human immunodeficiency virus occurs via a bimodal mechanism
Cullen, B. R. (1986) · Cell · doi:10.1016/0092-8674(86)90696-3 · Cited by 681 · see citing works
HIV-1 tat trans-activation requires the loop sequence within tar
Feng, S., & Holland, E. C. (1988) · Nature · doi:10.1038/334165a0 · Cited by 547 · see citing works
Dingwall, C., Ernberg, I., Gait, M. J., Green, S. M., Heaphy, S., Karn, J., Lowe, A. D., Singh, M., Skinner, M. A., & VALERIO, R. M. (1989) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.86.18.6925 · Cited by 476 · see citing works
Back, N. K. T., Nijhuis, M., Keulen, W., Boucher, C. A., Essink, B. B. O., Kuilenburg, A. B. P., Gennip, A. H., & Berkhout, B. (1996) · The EMBO Journal · doi:10.1002/j.1460-2075.1996.tb00777.x · Cited by 406 · see citing works
Self-citationPeden, K., Emerman, M., & Montagnier, L. (1991) · Virology · doi:10.1016/0042-6822(91)90537-l · Cited by 401 · see citing works
Baron, U., Gossen, M., & Bujard, H. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.14.2723 · Cited by 370 · see citing works
Self-citationBaba, T. W., Liška, V., Khimani, A. H., Ray, N. B., Dailey, P. J., Penninck, D. G., Bronson, R. T., Greene, M. F., McClure, H. M., Martin, L. N., et al. (1999) · Nature Medicine · doi:10.1038/5557 · Cited by 355 · see citing works
Baron, U., & Bujard, H. (2000) · Methods in Enzymology · doi:10.1016/s0076-6879(00)27292-3 · Cited by 335 · see citing works
Self-citationVaccine protection by a triple deletion mutant of simian immunodeficiency virus
Wyand, M. S., Manson, K. H., Garcia-Moll, M., Montefiori, D. C., & Desrosiers, R. C. (1996) · Journal of Virology · doi:10.1128/jvi.70.6.3724-3733.1996 · Cited by 320 · see citing works
Jeeninga, R. E., Hoogenkamp, M., Armand‐Ugón, M., de Baar, M. P., Verhoef, K., & Berkhout, B. (2000) · Journal of Virology · doi:10.1128/jvi.74.8.3740-3751.2000 · Cited by 287 · see citing works
Self-citationBerkhout, B., & Jeang, K. T. (1989) · Journal of Virology · doi:10.1128/jvi.63.12.5501-5504.1989 · Cited by 226 · see citing works
Self-citationJohnson, R. P., Lifson, J. D., Czajak, S. C., Cole, K. S., Manson, K. H., Glickman, R. L., Yang, J., Montefiori, D. C., Montelaro, R. C., Wyand, M. S., et al. (1999) · Journal of Virology · doi:10.1128/jvi.73.6.4952-4961.1999 · Cited by 220 · see citing works
A general and fast method to generate multiple site directed mutations
Mikaélian, I., & Sergeant, A. (1992) · Nucleic Acids Research · doi:10.1093/nar/20.2.376 · Cited by 217 · see citing works
Almond, N. M., Kent, K. A., Stott, E. J., Cranage, M. P., Rud, E. W., Clarke, B., & Rud, E. W. (1995) · The Lancet · doi:10.1016/s0140-6736(95)92540-6 · Cited by 216 · see citing works
LAV Revisited: Origins of the Early HIV-1 Isolates from Institut Pasteur
Wain–Hobson, S., Vartanian, J., Henry, M., Chenciner, N., Cheynier, R., Delassus, S., Pedroza-Martins, L., Sala, M., Nugeyre, M.-T., Guétard, D., et al. (1991) · Science · doi:10.1126/science.2035026 · Cited by 206 · see citing works
Tat is required for efficient HIV‐1 reverse transcription
Harrich, D., Ulich, C., García‐Martínez, L. F., & Gaynor, R. B. (1997) · The EMBO Journal · doi:10.1093/emboj/16.6.1224 · Cited by 155 · see citing works
Natural HIV-1 NEF accelerates virus replication in primary human lymphocytes
de Ronde, A., Klaver, B., Keulen, W., Smit, L., & Goudsmit, J. (1992) · Virology · doi:10.1016/0042-6822(92)90772-h · Cited by 153 · see citing works
Das, A. T., Klaver, B., & Berkhout, B. (1995) · Journal of Virology · doi:10.1128/jvi.69.5.3090-3097.1995 · Cited by 149 · see citing works
Self-citationLohman, B. L., McChesney, M. B., Miller, C. J., McGOWAN, E., Joye, S. M., Rompay, K. K. A. V., Reay, E., Antipa, L., Pedersen, N. C., & Marthas, M. L. (1994) · Journal of Virology · doi:10.1128/jvi.68.11.7021-7029.1994 · Cited by 140 · see citing works
Comparison of 5' and 3' long terminal repeat promoter function in human immunodeficiency virus
Klaver, B., & Berkhout, B. (1994) · Journal of Virology · doi:10.1128/jvi.68.6.3830-3840.1994 · Cited by 114 · see citing works
Self-citationThe Responsiveness of a Tetracycline-sensitive Expression System Differs in Different Cell Lines
Howe, J. R., Skryabin, B. V., Belcher, S. M., Zerillo, C. A., & Schmauss, C. (1995) · Journal of Biological Chemistry · doi:10.1074/jbc.270.23.14168 · Cited by 110 · see citing works
Das, A. T., Klaver, B., & Berkhout, B. (1999) · Journal of Virology · doi:10.1128/jvi.73.1.81-91.1999 · Cited by 107 · see citing works
Self-citationShibata, R., Siemon, C., Czajak, S. C., Desrosiers, R. C., & Martin, M. A. (1997) · Journal of Virology · doi:10.1128/jvi.71.11.8141-8148.1997 · Cited by 107 · see citing works
Declining CD4 T-Cell Counts in a Person Infected withnef-Deleted HIV-1
Greenough, T. C., Sullivan, J. L., & Desrosiers, R. C. (1999) · New England Journal of Medicine · doi:10.1056/nejm199901213400314 · Cited by 106 · see citing works
Dyer, W. B., Ogg, G. S., Demoitié, M., Jin, X., Geczy, A. F., Rowland‐Jones, S., McMichael, A. J., Nixon, D. F., & Sullivan, J. S. (1999) · Journal of Virology · doi:10.1128/jvi.73.1.436-443.1999 · Cited by 103 · see citing works
Sengupta, D., Berkhout, B., Gatignol, A., Zhou, A. M., & Silverman, R. H. (1990) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.87.19.7492 · Cited by 99 · see citing works
Self-citationEvolution of a disrupted TAR RNA hairpin structure in the HIV‐1 virus.
Klaver, B., & Berkhout, B. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06555.x · Cited by 95 · see citing works
Self-citationHuang, L., Joshi, A., Willey, R. L., Orenstein, J. M., & Jeang, K.-T. (1994) · The EMBO Journal · doi:10.1002/j.1460-2075.1994.tb06583.x · Cited by 91 · see citing works
Genetic Instability of Live, Attenuated Human Immunodeficiency Virus Type 1 Vaccine Strains
Berkhout, B., Verhoef, K., van Wamel, J. L. B., & Back, N. K. T. (1999) · Journal of Virology · doi:10.1128/jvi.73.2.1138-1145.1999 · Cited by 83 · see citing works
Self-citationRapid development of vaccine protection in macaques by live-attenuated simian immunodeficiency virus
Stahl‐Hennig, C., Dittmer, U., Nißlein, T., Petry, H., Jurkiewicz, E., Fuchs, D., Wachter, H., Mätz‐Rensing, K., Kuhn, E. M., Kaup, F. ‐., et al. (1996) · Journal of General Virology · doi:10.1099/0022-1317-77-12-2969 · Cited by 83 · see citing works
Kirchhoff, F., Kestler, H. W., & Desrosiers, R. C. (1994) · Journal of Virology · doi:10.1128/jvi.68.3.2031-2037.1994 · Cited by 80 · see citing works
Verhoef, K., Koper, M., & Berkhout, B. (1997) · Virology · doi:10.1006/viro.1997.8786 · Cited by 68 · see citing works
Self-citationPremature strand transfer by the HIV-1 reverse transcriptase during strong-stop DNA synthesis
Klaver, B., & Berkhout, B. (1994) · Nucleic Acids Research · doi:10.1093/nar/22.2.137 · Cited by 64 · see citing works
Self-citationRequirements for DNA Strand Transfer During Reverse Transcription in Mutant HIV-1 Virions
Berkhout, B., van Wamel, J. L. B., & Klaver, B. (1995) · Journal of Molecular Biology · doi:10.1006/jmbi.1994.0475 · Cited by 58 · see citing works
Self-citationIlyinskii, P. O., & Desrosiers, R. C. (1998) · The EMBO Journal · doi:10.1093/emboj/17.13.3766 · Cited by 51 · see citing works
Multiple biological roles associated with the repeat (R) Region of the HIV-I RNA genome
Berkhout, B. (2000) · Advances in pharmacology · doi:10.1016/s1054-3589(00)48003-8 · Cited by 49 · see citing works
Self-citationUlich, C., Dunne, A., Parry, E., Hooker, C. W., Gaynor, R. B., & Harrich, D. (1999) · Journal of Virology · doi:10.1128/jvi.73.3.2499-2508.1999 · Cited by 46 · see citing works
Ilyinskii, P. O., Daniel, M. D., Simon, M. A., Lackner, A. A., & Desrosiers, R. C. (1994) · Journal of Virology · doi:10.1128/jvi.68.9.5933-5944.1994 · Cited by 45 · see citing works
Mutational analysis of stem-loops in the RNA packaging signal of the Moloney murine leukemia virus.
Fisher, J., & Goff, S. (1998) · Virology · doi:10.1006/viro.1998.9090 · Cited by 44 · see citing works
In vivo selection of randomly mutated retroviral genomes
Berkhout, B., & Klaver, B. (1993) · Nucleic Acids Research · doi:10.1093/nar/21.22.5020 · Cited by 42 · see citing works
Self-citationA Second-Site Mutation That Restores Replication of a Tat-Defective Human Immunodeficiency Virus
Verhoef, K., & Berkhout, B. (1999) · Journal of Virology · doi:10.1128/jvi.73.4.2781-2789.1999 · Cited by 30 · see citing works
Self-citationDox-Dependent SIVmac with Tetracycline-Inducible Promoter in the U3 Promoter Region
Xiao, Y., Kuwata, T., Miura, T., Hayami, M., & Shida, H. (2000) · Virology · doi:10.1006/viro.2000.0213 · Cited by 16 · see citing works
Attenuated Retrovirus Vaccines and AIDS
Rompay, K. K. A. V., Spinner, A., Otsyula, M. G., McChesney, M. B., & Marthas, M. L. (1995) · Science · doi:10.1126/science.270.5239.1218 · Cited by 14 · see citing works
Functional Analysis of RNA Signals in the HIV-1 Genome by Forced Evolution
Berkhout, B., & Das, A. T. (1999) · Springer eBooks · doi:10.1007/978-94-011-4485-8_19 · Cited by 4 · see citing works
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T. Das, A., Tenenbaum, L., & Berkhout, B. (2016) · Current Gene Therapy · doi:10.2174/1566523216666160524144041 · Cited by 434 · see citing works
“To improve the safety of live-attenuated HIV vaccine candidates, we and others previously presented a conditionally replicating HIV variant, with replication that can be switched on and off at will by the administration and removal of an exogenous effector, respectively [42, 52-55].”
BackgroundMethodSelf-citationHuman Immunodeficiency Virus Type 1 Escapes from RNA Interference-Mediated Inhibition
Das, A. T., Brummelkamp, T. R., Westerhout, E. M., Vink, M. A., Madiredjo, M., Bernards, R., & Berkhout, B. (2004) · Journal of Virology · doi:10.1128/jvi.78.5.2601-2605.2004 · Cited by 423 · see citing works
Self-citationHIV-1 transcription and latency: an update
Lint, C. M. V., Bouchat, S., & Marcello, A. (2013) · Retrovirology · doi:10.1186/1742-4690-10-67 · Cited by 336 · see citing works
The Ebola Virus VP35 Protein Is a Suppressor of RNA Silencing
Haasnoot, J., de Vries, W., Geutjes, E.-J., Prins, M., de Haan, P., & Berkhout, B. (2007) · PLoS Pathogens · doi:10.1371/journal.ppat.0030086 · Cited by 312 · see citing works
Self-citationStructural Determinants and Mechanism of HIV-1 Genome Packaging
Lu, K., Heng, X., & Summers, M. F. (2011) · Journal of Molecular Biology · doi:10.1016/j.jmb.2011.04.029 · Cited by 260 · see citing works
Optimization of the Tet-On system for regulated gene expression through viral evolution
Zhou, X., Vink, M., Klaver, B., Berkhout, B., & Das, A. T. (2006) · Gene Therapy · doi:10.1038/sj.gt.3302780 · Cited by 224 · see citing works
Self-citationColin, L., & Lint, C. M. V. (2009) · Retrovirology · doi:10.1186/1742-4690-6-111 · Cited by 221 · see citing works
Macrophages archive HIV‐1 virions for dissemination in trans
Sharova, N. P., Swingler, C., Sharkey, M. E., & Stevenson, M. (2005) · The EMBO Journal · doi:10.1038/sj.emboj.7600707 · Cited by 204 · see citing works
Ruijter, J. M., Thygesen, H. H., Schoneveld, O., Das, A. T., Berkhout, B., & Lamers, W. H. (2006) · Retrovirology · doi:10.1186/1742-4690-3-2 · Cited by 186 · see citing works
Self-citationBaldwin, C. E., Sanders, R. W., Deng, Y., Jurriaans, S., Lange, J. M. A., Lu, M., & Berkhout, B. (2004) · Journal of Virology · doi:10.1128/jvi.78.22.12428-12437.2004 · Cited by 136 · see citing works
Self-citationDeep sequencing of virus-infected cells reveals HIV-encoded small RNAs
Schopman, N. C. T., Willemsen, M., Liu, Y. P., Bradley, T., van Kampen, A. H. C., Baas, F., Berkhout, B., & Haasnoot, J. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr719 · Cited by 133 · see citing works
Self-citationViral Evolution as a Tool to Improve the Tetracycline-regulated Gene Expression System
Das, A. T., Zhou, X., Vink, M., Klaver, B., Verhoef, K., Marzio, G., & Berkhout, B. (2004) · Journal of Biological Chemistry · doi:10.1074/jbc.m313895200 · Cited by 129 · see citing works
Self-citationThe HIV-1 Tat Protein Has a Versatile Role in Activating Viral Transcription
Das, A. T., Harwig, A., & Berkhout, B. (2011) · Journal of Virology · doi:10.1128/jvi.00650-11 · Cited by 119 · see citing works
Self-citationLive attenuated HIV vaccines: pitfalls and prospects
Whitney, J. B., & Ruprecht, R. M. (2004) · Current Opinion in Infectious Diseases · doi:10.1097/00001432-200402000-00004 · Cited by 108 · see citing works
Pluta, K. D., Luce, M. J., Bao, L., Agha‐Mohammadi, S., & Reiser, J. (2005) · The Journal of Gene Medicine · doi:10.1002/jgm.712 · Cited by 103 · see citing works
Corbel, S. Y., & Rossi, F. M. V. (2002) · Current Opinion in Biotechnology · doi:10.1016/s0958-1669(02)00361-0 · Cited by 89 · see citing works
Marzio, G., Verhoef, K., Vink, M., & Berkhout, B. (2001) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.111031498 · Cited by 81 · see citing works
Self-citationReplicative retroviral vectors for cancer gene therapy
Solly, S. K., Trajcevski, S., Frisén, C., Holzer, G. W., Nelson, E., Clerc, B., Abordo‐Adesida, E., Castro, M. G., Lowenstein, P. R., & Klatzmann, D. (2002) · Cancer Gene Therapy · doi:10.1038/sj.cgt.7700521 · Cited by 80 · see citing works
Markusic, D. (2005) · Nucleic Acids Research · doi:10.1093/nar/gni062 · Cited by 78 · see citing works
Inhibition of Nanobacteria by Antimicrobial Drugs as Measured by a Modified Microdilution Method
Çíftçíoglu, N., Miller-Hjelle, M. A., Hjelle, J. T., & Kajander, E. O. (2002) · Antimicrobial Agents and Chemotherapy · doi:10.1128/aac.46.7.2077-2086.2002 · Cited by 77 · see citing works
Didierlaurent, L., Racine, P. J., Houzet, L., Chamontin, C., Berkhout, B., & Mougel, M. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkr577 · Cited by 57 · see citing works
Self-citationDas, A. T., Harwig, A., Vrolijk, M. M., & Berkhout, B. (2007) · Journal of Virology · doi:10.1128/jvi.00392-07 · Cited by 54 · see citing works
Self-citationHIV-1 latency in actively dividing human T cell lines
Jeeninga, R. E., Westerhout, E. M., van Gerven, M. L., & Berkhout, B. (2008) · Retrovirology · doi:10.1186/1742-4690-5-37 · Cited by 51 · see citing works
Self-citationControlling Multicycle Replication of Live-Attenuated HIV-1 Using an Unnatural Genetic Switch
Yuan, Z., Wang, N., Kang, G., Niu, W., Li, Q., & Guo, J. (2017) · ACS Synthetic Biology · doi:10.1021/acssynbio.6b00373 · Cited by 47 · see citing works
Fechner, H., Wang, X., Srour, M. A., Siemetzki, U., Seltmann, H., Sutter, A. P., Scherübl, H., Zouboulis, C. C., Schwaab, R., Hillen, W., et al. (2003) · Gene Therapy · doi:10.1038/sj.gt.3302051 · Cited by 41 · see citing works
Self-citationTat-dependent production of an HIV-1 TAR-encoded miRNA-like small RNA
Harwig, A., Jongejan, A., van Kampen, A. H. C., Berkhout, B., & Das, A. T. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw167 · Cited by 40 · see citing works
Self-citationStrategies of Conditional Gene Expression in Myocardium
Heine, H. L., Leong, H. S., Rossi, F. M. V., McManus, B. M., & Podor, T. J. (2005) · Methods in molecular medicine · doi:10.1007/978-1-59259-879-3_8 · Cited by 40 · see citing works
Das, A. T., Zhou, X., Metz, S. W., Vink, M. A., & Berkhout, B. (2016) · Biotechnology Journal · doi:10.1002/biot.201500236 · Cited by 36 · see citing works
Self-citationEfficient Human Immunodeficiency Virus Replication Requires a Fine-Tuned Level of Transcription
Marzio, G., Vink, M., Verhoef, K., de Ronde, A., & Berkhout, B. (2002) · Journal of Virology · doi:10.1128/jvi.76.6.3084-3088.2002 · Cited by 35 · see citing works
Self-citationConstitutively Dead, Conditionally Live HIV-1 Genomes
Smith, S. M., Khoroshev, M. I., Marx, P. A., Orenstein, J. M., & Jeang, K. (2001) · Journal of Biological Chemistry · doi:10.1074/jbc.m101604200 · Cited by 35 · see citing works
CRISPR-Cas9 Dual-gRNA Attack Causes Mutation, Excision and Inversion of the HIV-1 Proviral DNA
Binda, C. S., Klaver, B., Berkhout, B., & Das, A. T. (2020) · Viruses · doi:10.3390/v12030330 · Cited by 34 · see citing works
Self-citationA Conditionally Replicating Virus as a Novel Approach Toward an HIV Vaccine
Das, A. T., Verhoef, K., & Berkhout, B. (2004) · Methods in enzymology on CD-ROM/Methods in enzymology · doi:10.1016/s0076-6879(04)88028-5 · Cited by 34 · see citing works
Self-citationInhibition of Tat-mediated HIV-1 replication and neurotoxicity by novel GSK3-beta inhibitors
Kehn‐Hall, K., Guendel, I., Carpio, L., Skaltsounis, A., Meijer, L., Al‐Harthi, L., Steiner, J. P., Nath, A., Kutsch, O., & Kashanchi, F. (2011) · Virology · doi:10.1016/j.virol.2011.03.025 · Cited by 33 · see citing works
HIV Vaccine Development in the Nonhuman Primate Model of AIDS
Smith, S. M. (2002) · Journal of Biomedical Science · doi:10.1007/bf02256020 · Cited by 33 · see citing works
Destabilization of the TAR hairpin affects the structure and function of the HIV-1 leader RNA
Vrolijk, M. M., Ooms, M., Harwig, A., Das, A. T., & Berkhout, B. (2008) · Nucleic Acids Research · doi:10.1093/nar/gkn364 · Cited by 32 · see citing works
Self-citationWesterhout, E. M., Vink, M. A., Haasnoot, P. C. J., Das, A. T., & Berkhout, B. (2006) · Molecular Therapy · doi:10.1016/j.ymthe.2006.03.018 · Cited by 32 · see citing works
Self-citationApolloni, A., Hooker, C. W., Mak, J., & Harrich, D. (2003) · Journal of Virology · doi:10.1128/jvi.77.18.9912-9921.2003 · Cited by 32 · see citing works
Optimization of the doxycycline-dependent simian immunodeficiency virus through in vitro evolution
Das, A. T., Klaver, B., Centlivre, M., Harwig, A., Ooms, M., Page, M., Almond, N. M., Yuan, F., Piatak, M., Lifson, J. D., et al. (2008) · Retrovirology · doi:10.1186/1742-4690-5-44 · Cited by 31 · see citing works
Self-citationZhou, X., Vink, M. A., Berkhout, B., & Das, A. T. (2006) · Retrovirology · doi:10.1186/1742-4690-3-82 · Cited by 31 · see citing works
Self-citationJeeninga, R. E., Jan, B., van den Berg, H., & Berkhout, B. (2006) · Retrovirology · doi:10.1186/1742-4690-3-64 · Cited by 31 · see citing works
Self-citationCentlivre, M., Zhou, X., Pouw, S. M., Weijer, K., Kleibeuker, W., Das, A. T., Blom, B., Seppen, J., Berkhout, B., & Legrand, N. (2010) · Gene Therapy · doi:10.1038/gt.2009.109 · Cited by 30 · see citing works
Self-citationDas, A. T., Klaver, B., Harwig, A., Vink, M. A., Ooms, M., Centlivre, M., & Berkhout, B. (2007) · Journal of Virology · doi:10.1128/jvi.01354-07 · Cited by 28 · see citing works
Self-citationP-TEFb Kinase Complex Phosphorylates Histone H1 to Regulate Expression of Cellular and HIV-1 Genes
O’Brien, S., Cao, H., Nathans, R. S., Ali, A., & Rana, T. M. (2010) · Journal of Biological Chemistry · doi:10.1074/jbc.m110.125997 · Cited by 27 · see citing works
Gene Therapy of HIV-1 Infection Using Lentiviral Vectors Expressing Anti-HIV-1 Genes
Mautino, M. R., & Morgan, R. A. (2002) · AIDS Patient Care and STDs · doi:10.1089/108729102753429361 · Cited by 27 · see citing works
Zhou, X., Vink, M. A., Klaver, B., Verhoef, K., Marzio, G., Das, A. T., & Berkhout, B. (2006) · Journal of Biological Chemistry · doi:10.1074/jbc.m513400200 · Cited by 26 · see citing works
Self-citationImproved single-chain transactivators of the Tet-On gene expression system
Zhou, X., Symons, J., Hoppes, R., Krueger, C., Berens, C., Hillen, W., Berkhout, B., & Das, A. T. (2007) · BMC Biotechnology · doi:10.1186/1472-6750-7-6 · Cited by 22 · see citing works
Self-citationNo vaccine against HIV yet--are we not perfectly equipped?
Singh, M. (2006) · Virology Journal · doi:10.1186/1743-422x-3-60 · Cited by 22 · see citing works
Das, A. T., Baldwin, C. E., Vink, M. A., & Berkhout, B. (2005) · Journal of Virology · doi:10.1128/jvi.79.6.3855-3858.2005 · Cited by 21 · see citing works
Self-citationVrolijk, M. M., Harwig, A., Berkhout, B., & Das, A. T. (2009) · Retrovirology · doi:10.1186/1742-4690-6-13 · Cited by 20 · see citing works
Self-citationVaccination against Toxoplasmosis
Roberts, C. W., McLeod, R. L., Henriquez, F. L., & Alexander, J. K. (2013) · Elsevier eBooks · doi:10.1016/b978-0-12-396481-6.00026-x · Cited by 20 · see citing works
Replicating viral vectors as HIV vaccines
Koff, W. C., Parks, C. L., Berkhout, B., Ackland, J., Noble, S., & Gust, I. D. (2008) · Biologicals · doi:10.1016/j.biologicals.2008.04.004 · Cited by 19 · see citing works
Self-citationBerkhout, B., Marzio, G., & Verhoef, K. (2001) · Virus Research · doi:10.1016/s0168-1702(01)00399-9 · Cited by 18 · see citing works
Self-citationBaldwin, C. E., & Berkhout, B. (2006) · Retrovirology · doi:10.1186/1742-4690-3-84 · Cited by 18 · see citing works
Self-citationHIV-1 evolution: frustrating therapies, but disclosing molecular mechanisms
Das, A. T., & Berkhout, B. (2010) · Philosophical Transactions of the Royal Society B Biological Sciences · doi:10.1098/rstb.2010.0072 · Cited by 17 · see citing works
Self-citationConditional live virus as a novel approach towards a safe live attenuated HIV vaccine
Das, A. T., Zhou, X., Vink, M. A., Klaver, B., & Berkhout, B. (2002) · Expert Review of Vaccines · doi:10.1586/14760584.1.3.293 · Cited by 17 · see citing works
Self-citationKiselyeva, Y., Ito, Y., Lima, R. G., Grivel, J.-C., Das, A. T., Berkhout, B., & Margolis, L. B. (2004) · Virology · doi:10.1016/j.virol.2004.07.014 · Cited by 13 · see citing works
Self-citationVaccination Against Toxoplasmosis: Current Status and Future Prospects
Schaap, D., VERMEULEN, A. N., Roberts, C. W., & Alexander, J. K. (2007) · Elsevier eBooks · doi:10.1016/b978-012369542-0/50026-x · Cited by 13 · see citing works
Babetto, E., Mangolini, A., Rizzardini, M., Lupi, M., Conforti, L., Rusmini, P., Poletti, A., & Cantoni, L. (2005) · Molecular Brain Research · doi:10.1016/j.molbrainres.2005.07.010 · Cited by 13 · see citing works
Impact of Nuclear Export Pathway on Cytoplasmic HIV-1 RNA Transport Mechanism and Distribution
Chen, J., Umunnakwe, C. N., Sun, D., Nikolaitchik, O. A., Pathak, V. K., Berkhout, B., Das, A. T., & Hu, W.-S. (2020) · mBio · doi:10.1128/mbio.01578-20 · Cited by 12 · see citing works
Self-citationNovel vaccine delivery systems: solutions to HIV vaccine dilemmas?
Sutter, G., & Haas, J. (2001) · AIDS · doi:10.1097/00002030-200100005-00017 · Cited by 12 · see citing works
Generation and Characterization of a Defective HIV-1 Virus as an Immunogen for a Therapeutic Vaccine
Álvarez‐Fernández, C., Guardo, A. C., García‐Pérez, J., García, F., Blanco, J., Escribà-García, L., Gatell, J. M., Alcamı́, J., Plana, M., & Sánchez‐Palomino, S. (2012) · PLoS ONE · doi:10.1371/journal.pone.0048848 · Cited by 11 · see citing works
Berkhout, B., Verhoef, K., Marzio, G., Klaver, B., Vink, M. A., Zhou, X., & Das, A. T. (2002) · Journal of NeuroVirology · doi:10.1080/13550280290101102 · Cited by 11 · see citing works
Self-citationVirus Evolution as a Tool to Study HIV-1 Biology
Berkhout, B., & Das, A. T. (2009) · Methods in molecular biology · doi:10.1007/978-1-59745-170-3_30 · Cited by 10 · see citing works
Self-citationBeyond retrovirus infection: HIV meets gene therapy
da Silva, F. H., Dalberto, T. P., & Nardi, N. B. (2006) · Genetics and Molecular Biology · doi:10.1590/s1415-47572006000200027 · Cited by 9 · see citing works
Bonneau, K. R., Ng, S., Foster, H., Choi, K. B., Berkhout, B., Rabson, A. B., Mackewicz, C. E., & Levy, J. A. (2007) · Virology · doi:10.1016/j.virol.2007.11.003 · Cited by 9 · see citing works
Self-citationMahender, S. (2005) · Frontiers in bioscience · doi:10.2741/1682 · Cited by 9 · see citing works
Female Genital Tract Infections and Immunity in Animal Models
Parr, E. L., & Parr, M. B. (2005) · Elsevier eBooks · doi:10.1016/b978-012491543-5/50098-x · Cited by 9 · see citing works
HIV vaccine: it may take two to tango, but no party time yet
Berkhout, B., & Paxton, W. A. (2009) · Retrovirology · doi:10.1186/1742-4690-6-88 · Cited by 9 · see citing works
Self-citationLegrand, N., van der Velden, G. J., Fang, R. H. T., Douaisi, M., Weijer, K., Das, A. T., Blom, B., Uittenbogaart, C. H., Berkhout, B., & Centlivre, M. (2012) · Journal of General Virology · doi:10.1099/vir.0.042796-0 · Cited by 8 · see citing works
Self-citationSynthetic biology approach for the development of conditionally replicating HIV ‐1 vaccine
Wang, N., Yuan, Z., Niu, W., Li, Q., & Guo, J. (2016) · Journal of Chemical Technology & Biotechnology · doi:10.1002/jctb.5174 · Cited by 8 · see citing works
Possible Applications for Replicating Hiv-1 Vectors
Das, A. T., Jeeninga, R. E., & Berkhout, B. (2010) · HIV Therapy · doi:10.2217/hiv.10.20 · Cited by 7 · see citing works
Self-citationTat has a dual role in simian immunodeficiency virus transcription
van der Velden, G. J., Vink, M. A., Berkhout, B., & Das, A. T. (2012) · Journal of General Virology · doi:10.1099/vir.0.044511-0 · Cited by 7 · see citing works
Self-citationParr, E. L., & Parr, M. B. (2002) · Science · doi:10.1126/science.296.5567.469a · Cited by 6 · see citing works
Brandt, S., Grünwald, T., Lucke, S., Stang, A., & Überla, K. (2006) · Journal of General Virology · doi:10.1099/vir.0.81883-0 · Cited by 6 · see citing works
Conditionally replicating HIV and SIV variants
Das, A. T., & Berkhout, B. (2015) · Virus Research · doi:10.1016/j.virusres.2015.05.004 · Cited by 5 · see citing works
Self-citationvan der Velden, Y. U., Kleibeuker, W., Harwig, A., Klaver, B., Siteur-van Rijnstra, E., Frankin, E., Berkhout, B., & Das, A. T. (2016) · Virology · doi:10.1016/j.virol.2015.11.004 · Cited by 3 · see citing works
Self-citationResearch Strategies for Treatment of Nanobacteria
Abo‐EL‐Sooud, K., Hashem, M. M., Ramadan, A., EL-Aty, A. M. A., Awadallaha, K. Y., & Gab-Allaha, A. Q. (2011) · Insight nanotechnology · doi:10.5567/inano-ik.2011.1.8 · Cited by 3 · see citing works
Vector-Mediated and Viral Delivery of Short Hairpin RNAs
Fechner, H., & Kurreck, J. (2008) · Royal Society of Chemistry eBooks · doi:10.1039/9781847558275-00267 · Cited by 3 · see citing works
A Conditionally Replicating Human Immunodeficiency Virus in BRG-HIS Mice
Centlivre, M., Legrand, N., & Berkhout, B. (2014) · Springer eBooks · doi:10.1007/978-1-4939-1655-9_35 · Cited by 2 · see citing works
Self-citationTowards a genetic AIDS vaccine
Bordería, A. V., & Berkhout, B. (2009) · Retrovirology · doi:10.1186/1742-4690-6-93 · Cited by 1 · see citing works
Self-citationWeinberger, L. S., Burnett, J. C., Toettcher, J. E., Arkin, A. P., & Schaffer, D. V. (2006) · arXiv (Cornell University) · doi:10.48550/arxiv.q-bio/0608003
Lentiviral vectors for regulated and liver directed gene therapy
Markusic, D. M. (2007) · UvA-DARE (University of Amsterdam)
O’Brien, S. (2010) · The Journal of the American Medical Association (JAMA) Network (American Medical Association) · doi:10.13028/yvpr-mx32
Vaccine development/Prion disease/Viral-induced tumours
Levy, R., Riesner, D., & Khalili, K. (2002) · Journal of NeuroVirology · doi:10.1007/bf03212369
Vaccine Approaches for Protection Against HIV
Smith, S. M., Singh, M., & Jeang, K. (2006) · Encyclopedia of Molecular Cell Biology and Molecular Medicine · doi:10.1002/3527600906.mcb.200500047
Etude des mécanismes contrôlant la spécificité d'encapsidation des ARN dans le VIH-1
Didierlaurent, L. (2010) · theses.fr (ABES) · doi:10.70675/6af45cb6z95b9z414cz94fbzdcd9c17fde4a
- Authors
- Verhoef, K., Marzio, G., Hillen, W., Bujard, H., & Berkhout, B.
- Affiliations
- Amsterdam UMC Location University of Amsterdam (NL)
- Friedrich-Alexander-Universität Erlangen-Nürnberg (DE)
- Heidelberg University (DE)
- ORCID
- Berkhout, Ben
- Venue
- Journal of Virology
- Publisher
- American Society for Microbiology
- Published
- 2001-01-15
- Volume
- 75
- Issue
- 2
- Pages
- 979-987
- ISSN
- 0022-538X (ISSN-L)
- 1098-5514
- PMC
- PMC113994
- OpenAlex
- W2087430988
- Cited by
- 88
- References
- 55
- Citations by year
- 2020: 2 · 2017: 1 · 2016: 3 · 2015: 3 · 2014: 1 · 2013: 2 · 2012: 5
- FWCI
- 2.56
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Journal of Virology (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Pure Amsterdam UMC (publishedVersion)
- Data Archiving and Networked Services (DANS) (submittedVersion)
- Funders
- KWF Kankerbestrijding
- Topics
- Life Sciences › Immunology and Microbiology › Virology › HIV Research and Treatment
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
- Health Sciences › Medicine › Infectious Diseases › HIV/AIDS drug development and treatment
- Keywords
- HIV-1, Tet-On system, doxycycline-inducible expression, replication control, primary T cells
- MeSH terms
- Bacterial Proteins, Cell Line, Chemoreceptor Cells, Escherichia coli, Humans, Membrane Proteins, Receptors, Cell Surface, Repressor Proteins, T-Lymphocytes, Transfection, Virus Replication, HIV-1, Transcriptional Activation, Gene Products, tat, Gene Expression Regulation, Viral, Mutagenesis, Insertional, Gene Deletion, Escherichia coli Proteins, tat Gene Products, Human Immunodeficiency Virus
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