Mycobacteriophages

Mash: fast genome and metagenome distance estimation using MinHash

(2016) · Genome biology · doi:10.1186/s13059-016-0997-x · Cited by 3,373 · see citing works

Identifying bacterial genes and endosymbiont DNA with Glimmer

Delcher, A. L., Bratke, K. A., Powers, E. C., & Salzberg, S. L. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm009 · Cited by 3,141 · see citing works

Isolation and characterization of efficient plasmid transformation mutants of <i>Mycobacterium smegmatis</i>

Snapper, S. B., Melton, R. E., Mustafa, S., Kieser, T., & Jr, W. R. J. (1990) · Molecular Microbiology · doi:10.1111/j.1365-2958.1990.tb02040.x · Cited by 1,237 · see citing works

Systematic discovery of antiphage defense systems in the microbial pangenome

Doron, S., Melamed, S., Ofir, G., Leavitt, A., Lopatina, A., Keren, M., Amitai, G., & Sorek, R. (2018) · Science · doi:10.1126/science.aar4120 · Cited by 1,190 · see citing works

Evolutionary relationships among diverse bacteriophages and prophages: All the world’s a phage

Hendrix, R. W., Smith, M. C. M., Burns, R. N., Ford, M. E., & Hatfull, G. F. (1999) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.96.5.2192 · Cited by 1,112 · see citing works

Bacteriophage genes that inactivate the CRISPR/Cas bacterial immune system

Bondy-Denomy, J., Pawluk, A., Maxwell, K. L., & Davidson, A. R. (2012) · Nature · doi:10.1038/nature11723 · Cited by 818 · see citing works

Lytic to temperate switching of viral communities

Knowles, B., Silveira, C. B., Bailey, B., Barott, K. L., Cantu, A., Güemes, A. G. C., Coutinho, F. H., Dinsdale, E. A., Felts, B., Furby, K. A., et al. (2016) · Nature · doi:10.1038/nature17193 · Cited by 707 · see citing works

Origins of Highly Mosaic Mycobacteriophage Genomes

Pedulla, M. L., Ford, M. E., Houtz, J. M., Karthikeyan, T., Wadsworth, C., Lewis, J. A., Jacobs-Sera, D., Falbo, J., Gross, J., Pannunzio, N. R., et al. (2003) · Cell · doi:10.1016/s0092-8674(03)00233-2 · Cited by 654 · see citing works

The biology of restriction and anti-restriction

Tock, M. R., & Dryden, D. T. F. (2005) · Current Opinion in Microbiology · doi:10.1016/j.mib.2005.06.003 · Cited by 593 · see citing works

Specialized transduction: an efficient method for generating marked and unmarked targeted gene disruptions in Mycobacterium tuberculosis, M. bovis BCG and M. smegmatis

Bardarov, S., Bardarov, S. S., Pavelka, M. S., Sambandamurthy, V. K., Larsen, M. H., Tufariello, J. M., Chan, J., Hatfull, G. F., & Jacobs, W. R. (2002) · Microbiology · doi:10.1099/00221287-148-10-3007 · Cited by 590 · see citing works

Recombineering in Mycobacterium tuberculosis

van Kessel, J. C., & Hatfull, G. F. (2006) · Nature Methods · doi:10.1038/nmeth996 · Cited by 582 · see citing works

The phage abortive infection system, ToxIN, functions as a protein–RNA toxin–antitoxin pair

Fineran, P. C., Blower, T. R., Foulds, I. J., Humphreys, D. P., Lilley, K. S., & Salmond, G. P. C. (2009) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0808832106 · Cited by 574 · see citing works

A Broadly Implementable Research Course in Phage Discovery and Genomics for First-Year Undergraduate Students

Jordan, T. C., Burnett, S. H., Carson, S., Caruso, S. M., Clase, K., DeJong, R. J., Dennehy, J. J., Denver, D. R., Dunbar, D., Elgin, S. C. R., et al. (2014) · mBio · doi:10.1128/mbio.01051-13 · Cited by 509 · see citing works

Prophages mediate defense against phage infection through diverse mechanisms

Bondy‐Denomy, J., Qian, J., Westra, E. R., Buckling, A. G. J., Guttman, D. S., Davidson, A. R., & Maxwell, K. L. (2016) · The ISME Journal · doi:10.1038/ismej.2016.79 · Cited by 507 · see citing works

Phamerator: a bioinformatic tool for comparative bacteriophage genomics

Cresawn, S. G., Bogel, M. W., Day, N., Jacobs‐Sera, D., Hendrix, R. W., & Hatfull, G. F. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-395 · Cited by 462 · see citing works

Rapid Assessment of Drug Susceptibilities of Mycobacterium tuberculosis by Means of Luciferase Reporter Phages

Jacobs, W. R., Barletta, R. G., Udani, R., Chan, J., Kalkut, G., Sosne, G., Kieser, T., Sarkis, G. J., Hatfull, G. F., & Bloom, B. R. (1993) · Science · doi:10.1126/science.8484123 · Cited by 438 · see citing works

PhagesDB: the actinobacteriophage database

Russell, D. A., & Hatfull, G. F. (2016) · Bioinformatics · doi:10.1093/bioinformatics/btw711 · Cited by 423 · see citing works

Site-specific integration of mycobacteriophage L5: integration-proficient vectors for Mycobacterium smegmatis, Mycobacterium tuberculosis, and bacille Calmette-Guérin.

Lee, M., Pascopella, L., Jacobs, W. R., & Hatfull, G. F. (1991) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.88.8.3111 · Cited by 412 · see citing works

Bacteriophage genomics

Hatfull, G. F. (2008) · Current Opinion in Microbiology · doi:10.1016/j.mib.2008.09.004 · Cited by 374 · see citing works

Phage abortive infection in lactococci: variations on a theme

Chopin, M., Chopin, A., & Bidnenko, E. (2005) · Current Opinion in Microbiology · doi:10.1016/j.mib.2005.06.006 · Cited by 368 · see citing works

DISARM is a widespread bacterial defence system with broad anti-phage activities

Ofir, G., Melamed, S., Sberro, H., Mukamel, Z., Silverman, S., Yaakov, G., Doron, S., & Sorek, R. (2017) · Nature Microbiology · doi:10.1038/s41564-017-0051-0 · Cited by 333 · see citing works

Lysogeny and transformation in mycobacteria: stable expression of foreign genes.

Snapper, S. B., Lugosi, L., Jekkel, A., Melton, R. E., Kieser, T., Bloom, B. R., & Jacobs, W. R. (1988) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.85.18.6987 · Cited by 326 · see citing works

Introduction of foreign DNA into mycobacteria using a shuttle phasmid

Jacobs, W. R., Tuckman, M., & Bloom, B. R. (1987) · Nature · doi:10.1038/327532a0 · Cited by 314 · cited 2× · see citing works

Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity

Pope, W. H., Bowman, C. A., Russell, D. A., Jacobs‐Sera, D., Asai, D. J., Cresawn, S. G., Jacobs, W. R., Hendrix, R. W., Lawrence, J. G., Hatfull, G. F., et al. (2015) · eLife · doi:10.7554/elife.06416 · Cited by 311 · see citing works

Comparative Genomic Analysis of 60 Mycobacteriophage Genomes: Genome Clustering, Gene Acquisition, and Gene Size

Hatfull, G. F., Jacobs‐Sera, D., Lawrence, J. G., Pope, W. H., Russell, D. A., Ko, C., Weber, R. J., Patel, M. C., Germane, K. L., Edgar, R. H., et al. (2010) · Journal of Molecular Biology · doi:10.1016/j.jmb.2010.01.011 · Cited by 302 · see citing works

Bacteriophage evolution differs by host, lifestyle and genome

Mavrich, T. N., & Hatfull, G. F. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2017.112 · Cited by 296 · see citing works

Exploring the Mycobacteriophage Metaproteome: Phage Genomics as an Educational Platform

Hatfull, G. F., Pedulla, M. L., Jacobs‐Sera, D., Cichon, P. M., Foley, A., Ford, M. E., Gonda, R. M., Houtz, J. M., Hryckowian, A. J., Kelchner, V., et al. (2006) · PLoS Genetics · doi:10.1371/journal.pgen.0020092 · Cited by 280 · see citing works

Prophage-mediated defence against viral attack and viral counter-defence

Dedrick, R. M., Jacobs‐Sera, D., Guerrero-Bustamante, C. A., Garlena, R. A., Mavrich, T. N., Pope, W. H., Reyes, J. C. C., Russell, D. A., Adair, T. L., Alvey, R. M., et al. (2017) · Nature Microbiology · doi:10.1038/nmicrobiol.2016.251 · Cited by 279 · see citing works

Conditionally replicating mycobacteriophages: A system for transposon delivery to Mycobacterium tuberculosis

Bardarov, S., Kriakov, J., Carrière, C., Yu, S., Vaamonde, C., McAdam, R. A., Bloom, B. R., Hatfull, G. F., & Jacobs, W. R. (1997) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.94.20.10961 · Cited by 278 · see citing works

Understanding the enormous diversity of bacteriophages: The tailed phages that infect the bacterial family Enterobacteriaceae

Grose, J. H., & Casjens, S. (2014) · Virology · doi:10.1016/j.virol.2014.08.024 · Cited by 250 · see citing works

Antimicrobial drug discovery through bacteriophage genomics

Liu, J., Dehbi, M., Moeck, G., Arhin, F. F., Bauda, P., Bergeron, D., Callejo, M., Ferretti, V., Ha, N., Kwan, T., et al. (2004) · Nature Biotechnology · doi:10.1038/nbt932 · Cited by 232 · see citing works

BRED: A Simple and Powerful Tool for Constructing Mutant and Recombinant Bacteriophage Genomes

Marinelli, L. J., Piuri, M., Swigoňová, Z., Balachandran, A., Oldfield, L. M., van Kessel, J. C., & Hatfull, G. F. (2008) · PLoS ONE · doi:10.1371/journal.pone.0003957 · Cited by 228 · see citing works

DNA sequence, structure and gene expression of mycobacteriophage L5: a phage system for mycobacterial genetics

Hatfult, G. F., & Sarkis, G. J. (1993) · Molecular Microbiology · doi:10.1111/j.1365-2958.1993.tb01131.x · Cited by 226 · see citing works

Dark Matter of the Biosphere: the Amazing World of Bacteriophage Diversity

Hatfull, G. F. (2015) · Journal of Virology · doi:10.1128/jvi.01340-15 · Cited by 225 · see citing works

An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning

Hanauer, D. I., Graham, M. J., SEA-PHAGES, Betancur, L., Bobrownicki, A., Cresawn, S. G., Garlena, R. A., Jacobs-Sera, D., Kaufmann, N., Pope, W. H., et al. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1718188115 · Cited by 217 · see citing works

Genome structure of mycobacteriophage D29: implications for phage evolution 1 1Edited by J. Karn

Ford, M. E., Sarkis, G. J., Belanger, A. E., Hendrix, R. W., & Hatfull, G. F. (1998) · Journal of Molecular Biology · doi:10.1006/jmbi.1997.1610 · Cited by 198 · see citing works

On the nature of mycobacteriophage diversity and host preference

Jacobs‐Sera, D., Science Education Alliance Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES) program, Marinelli, L. J., Bowman, C. A., Broussard, G. W., Guerrero-Bustamante, C. A., Boyle, M. M., Petrova, Z. O., Dedrick, R. M., Pope, W. H., et al. (2012) · Virology · doi:10.1016/j.virol.2012.09.026 · Cited by 191 · see citing works

Control of directionality in integrase-mediated recombination: examination of recombination directionality factors (RDFs) including Xis and Cox proteins

Lewis, J. A. (2001) · Nucleic Acids Research · doi:10.1093/nar/29.11.2205 · Cited by 182 · see citing works

Bacteriophages of Gordonia spp. Display a Spectrum of Diversity and Genetic Relationships

Pope, W. H., Mavrich, T. N., Garlena, R. A., Guerrero-Bustamante, C. A., Jacobs‐Sera, D., Montgomery, M. T., Russell, D. A., Warner, M. H., Science Education Alliance-Phage Hunters Advancing Genomics and Evolutionary Science (SEA-PHAGES), & Hatfull, G. F. (2017) · mBio · doi:10.1128/mbio.01069-17 · Cited by 178 · see citing works

Subpolar addition of new cell wall is directed by DivIVA in mycobacteria

Meniche, X., Otten, R., Siegrist, M. S., Baer, C. E., Murphy, K. C., Bertozzi, C. R., & Sassetti, C. M. (2014) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1402158111 · Cited by 175 · see citing works

Teaching Scientific Inquiry

Hanauer, D. I., Jacobs‐Sera, D., Pedulla, M. L., Cresawn, S. G., Hendrix, R. W., & Hatfull, G. F. (2006) · Science · doi:10.1126/science.1136796 · Cited by 169 · see citing works

Superinfection immunity of mycobacteriophage L5: applications for genetic transformation of mycobacteria

Donnelly‐Wu, M. K., Jacobs, W. R., & Hatfull, G. F. (1993) · Molecular Microbiology · doi:10.1111/j.1365-2958.1993.tb01132.x · Cited by 160 · see citing works

Functional analysis of pAL5000, a plasmid from Mycobacterium fortuitum: construction of a "mini" mycobacterium-Escherichia coli shuttle vector

Ranes, M., Rauzier, J., Lagranderie, M., Gheorghiu, M., & Gicquel, B. (1990) · Journal of Bacteriology · doi:10.1128/jb.172.5.2793-2797.1990 · Cited by 159 · see citing works

Expanding the Diversity of Mycobacteriophages: Insights into Genome Architecture and Evolution

Pope, W. H., Jacobs‐Sera, D., Russell, D. A., Peebles, C. L., Al-Atrache, Z., Alcoser, T. A., Alexander, L. M., Alfano, M. B., Alford, S. T., Amy, N. E., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0016329 · Cited by 154 · see citing works

Efficient point mutagenesis in mycobacteria using single‐stranded DNA recombineering: characterization of antimycobacterial drug targets

van Kessel, J. C., & Hatfull, G. F. (2008) · Molecular Microbiology · doi:10.1111/j.1365-2958.2008.06109.x · Cited by 150 · see citing works

Mycobacteriophage Lysin B is a novel mycolylarabinogalactan esterase

Payne, K. M., Sun, Q., Sacchettini, J. C., & Hatfull, G. F. (2009) · Molecular Microbiology · doi:10.1111/j.1365-2958.2009.06775.x · Cited by 149 · see citing works

Mycobacteriophage Bxb1 integrates into the Mycobacterium smegmatis groEL1 gene

Kim, A. I., Ghosh, P., Aaron, M. A., Bibb, L. A., Jain, S., & Hatfull, G. F. (2003) · Molecular Microbiology · doi:10.1046/j.1365-2958.2003.03723.x · Cited by 146 · see citing works

Recombineering mycobacteria and their phages

van Kessel, J. C., Marinelli, L. J., & Hatfull, G. F. (2008) · Nature Reviews Microbiology · doi:10.1038/nrmicro2014 · Cited by 144 · see citing works

The Bacteriophage HK97 gp15 Moron Element Encodes a Novel Superinfection Exclusion Protein

Cumby, N., Edwards, A. M., Davidson, A. R., & Maxwell, K. L. (2012) · Journal of Bacteriology · doi:10.1128/jb.00843-12 · Cited by 136 · see citing works

Mycobacteriophage Endolysins: Diverse and Modular Enzymes with Multiple Catalytic Activities

Payne, K. M., & Hatfull, G. F. (2012) · PLoS ONE · doi:10.1371/journal.pone.0034052 · Cited by 134 · see citing works

The Secret Lives of Mycobacteriophages

Hatfull, G. F. (2012) · Advances in virus research · doi:10.1016/b978-0-12-394621-8.00015-7 · Cited by 131 · see citing works

Bacteriophage Active Against Virulent Mycobacterium tuberculosis—I. Isolation and Activity

FROMAN, S., Will, D. W., & Bogen, E. (1954) · American Journal of Public Health and the Nations Health · doi:10.2105/ajph.44.10.1326 · Cited by 129 · see citing works

Superinfection exclusion by P22 prophage in lysogens of Salmonella typhimurium

Susskind, M. M., Botstein, D., & Wright, A. (1974) · Virology · doi:10.1016/0042-6822(74)90398-5 · Cited by 122 · see citing works

Mycobacteriophages: Genes and Genomes

Hatfull, G. F. (2010) · Annual Review of Microbiology · doi:10.1146/annurev.micro.112408.134233 · Cited by 121 · see citing works

Propionibacterium acnes Bacteriophages Display Limited Genetic Diversity and Broad Killing Activity against Bacterial Skin Isolates

Marinelli, L. J., Fitz‐Gibbon, S. T., Hayes, C. A., Bowman, C. A., Inkeles, M. S., Loncaric, A., Russell, D. A., Jacobs‐Sera, D., Cokus, S. J., Pellegrini, M. A., et al. (2012) · mBio · doi:10.1128/mbio.00279-12 · Cited by 120 · see citing works

Fluoromycobacteriophages for Rapid, Specific, and Sensitive Antibiotic Susceptibility Testing of Mycobacterium tuberculosis

Piuri, M., Jacobs, W. R., & Hatfull, G. F. (2009) · PLoS ONE · doi:10.1371/journal.pone.0004870 · Cited by 115 · see citing works

Recombineering

Marinelli, L. J., Hatfull, G. F., & Piuri, M. (2012) · Bacteriophage · doi:10.4161/bact.18778 · Cited by 109 · see citing works

Mycobacteriophages: Windows into Tuberculosis

Hatfull, G. F. (2014) · PLoS Pathogens · doi:10.1371/journal.ppat.1003953 · Cited by 103 · see citing works

Mycobacterial Recombineering

van Kessel, J. C., & Hatfull, G. F. (2008) · Methods in molecular biology · doi:10.1007/978-1-59745-232-8_15 · Cited by 101 · see citing works

Molecular Genetics of Mycobacteriophages

Hatfull, G. F. (2014) · Microbiology Spectrum · doi:10.1128/microbiolspec.mgm2-0032-2013 · Cited by 100 · see citing works

Complete nucleotide sequence of pAL5OOO, a plasmid from Mycobacterium fortuitum

Rauzier, J., Moniz-Pereira, J., & Gicquel-Sanzey, B. (1988) · Gene · doi:10.1016/0378-1119(88)90048-0 · Cited by 98 · see citing works

Genomic Characterization of Mycobacteriophage Giles: Evidence for Phage Acquisition of Host DNA by Illegitimate Recombination

Morris, P., Marinelli, L. J., Jacobs‐Sera, D., Hendrix, R. W., & Hatfull, G. F. (2008) · Journal of Bacteriology · doi:10.1128/jb.01657-07 · Cited by 98 · see citing works

Insights into the function of the WhiB‐like protein of mycobacteriophage TM4 – a transcriptional inhibitor of WhiB2

Rybniker, J., Nowag, A., van Gumpel, E., Nissen, N., Robinson, N., Plum, G., & Hartmann, P. (2010) · Molecular Microbiology · doi:10.1111/j.1365-2958.2010.07235.x · Cited by 94 · see citing works

Mycobacteriophage TM4: genome structure and gene expression

Ford, M. E., Stenström, C. M., Hendrix, R. W., & Hatfull, G. F. (1998) · Tubercle and Lung Disease · doi:10.1054/tuld.1998.0007 · Cited by 94 · see citing works

Genome organization and characterization of mycobacteriophage Bxb1

Mediavilla, J. R., Jain, S., Kriakov, J., Ford, M. E., Duda, R. L., Jacobs, W. R., Hendrix, R. W., & Hatfull, G. F. (2000) · Molecular Microbiology · doi:10.1046/j.1365-2958.2000.02183.x · Cited by 93 · see citing works

Comparative genomic analysis of mycobacteriophage Tweety: evolutionary insights and construction of compatible site-specific integration vectors for mycobacteria

Pham, T. T. T., Jacobs‐Sera, D., Pedulla, M. L., Hendrix, R. W., & Hatfull, G. F. (2007) · Microbiology · doi:10.1099/mic.0.2007/008904-0 · Cited by 92 · see citing works

Transcriptional silencing by the mycobacteriophage L5 repressor

Brown, K. L., Sarkis, G. J., Wadsworth, C., & Hatfull, G. F. (1997) · The EMBO Journal · doi:10.1093/emboj/16.19.5914 · Cited by 90 · see citing works

Novel role of Wag31 in protection of mycobacteria under oxidative stress

Mukherjee, P., Sureka, K., Datta, P., Hossain, T., Barik, S., Das, K. P., Kundu, M., & Basu, J. (2009) · Molecular Microbiology · doi:10.1111/j.1365-2958.2009.06750.x · Cited by 88 · see citing works

Integration-Dependent Bacteriophage Immunity Provides Insights into the Evolution of Genetic Switches

Broussard, G. W., Oldfield, L. M., Villanueva, V. M., Lunt, B. L., Shine, E. E., & Hatfull, G. F. (2012) · Molecular Cell · doi:10.1016/j.molcel.2012.11.012 · Cited by 86 · see citing works

Dual-Reporter Mycobacteriophages (Φ 2 DRMs) Reveal Preexisting Mycobacterium tuberculosis Persistent Cells in Human Sputum

Jain, P., Weinrick, B. C., Kalivoda, E. J., Yang, H., Munsamy, V., Vilchèze, C., Weisbrod, T. R., Larsen, M. H., O’Donnell, M. R., Pym, A. S., et al. (2016) · mBio · doi:10.1128/mbio.01023-16 · Cited by 83 · see citing works

ϕ 2 GFP10, a High-Intensity Fluorophage, Enables Detection and Rapid Drug Susceptibility Testing of Mycobacterium tuberculosis Directly from Sputum Samples

Jain, P., Hartman, T. E., Eisenberg, N., O’Donnell, M. R., Kriakov, J., Govender, K., Makume, M. T., Thaler, D. S., Hatfull, G. F., Sturm, A. W., et al. (2012) · Journal of Clinical Microbiology · doi:10.1128/jcm.06192-11 · Cited by 80 · see citing works

The λ Red Proteins Promote Efficient Recombination between Diverged Sequences: Implications for Bacteriophage Genome Mosaicism

Martinsohn, J. T., Radman, M., & Petit, M. (2008) · PLoS Genetics · doi:10.1371/journal.pgen.1000065 · Cited by 76 · see citing works

Cluster K Mycobacteriophages: Insights into the Evolutionary Origins of Mycobacteriophage TM4

Pope, W. H., Ferreira, C. M., Jacobs‐Sera, D., Benjamin, R. C., Davis, A. J., DeJong, R. J., Elgin, S. C. R., Guilfoile, F. R., Forsyth, M. H., Harris, A. D., et al. (2011) · PLoS ONE · doi:10.1371/journal.pone.0026750 · Cited by 73 · see citing works

Detection and drug-susceptibility testing of M. tuberculosis from sputum samples using luciferase reporter phage: comparison with the Mycobacteria Growth Indicator Tube (MGIT) system

Bardarov, S. S., Dou, H. Y., Eisenach, K. D., Banaei, N., Ya, S. U., Chan, J., Jacobs, W. R., & Riska, P. F. (2003) · Diagnostic Microbiology and Infectious Disease · doi:10.1016/s0732-8893(02)00478-9 · Cited by 70 · see citing works

The λ Integrase Site-specific Recombination Pathway

Landy, A. (2015) · Microbiology Spectrum · doi:10.1128/microbiolspec.mdna3-0051-2014 · Cited by 69 · see citing works

Transcriptional regulation of repressor synthesis in mycobacteriophage L5

Nesbit, C. E., Levin, M. E., Donnelly‐Wu, M. K., & Hatfull, G. F. (1995) · Molecular Microbiology · doi:10.1111/j.1365-2958.1995.mmi_17061045.x · Cited by 64 · see citing works

Functional requirements for bacteriophage growth: gene essentiality and expression in mycobacteriophage G iles

Dedrick, R. M., Marinelli, L. J., Newton, G. L., Pogliano, K., Pogliano, J. A., & Hatfull, G. F. (2013) · Molecular Microbiology · doi:10.1111/mmi.12210 · Cited by 63 · see citing works

Mycobacteriophages BPs, Angel and Halo: comparative genomics reveals a novel class of ultra-small mobile genetic elements

Sampson, T. R., Broussard, G. W., Marinelli, L. J., Jacobs‐Sera, D., Ray, M., Ko, C., Russell, D. A., Hendrix, R. W., & Hatfull, G. F. (2009) · Microbiology · doi:10.1099/mic.0.030486-0 · Cited by 62 · see citing works

Characterization of the mycobacteriophage L5 attachment site, attP 1 1 Edited by M. Gottesman

Peña, C. E. A., Lee, M. H., Pedulla, M. L., & Hatfull, G. F. (1997) · Journal of Molecular Biology · doi:10.1006/jmbi.1996.0774 · Cited by 61 · see citing works

A century of phage lessons

Rohwer, F. L., & Segall, A. M. (2015) · Nature · doi:10.1038/528046a · Cited by 60 · see citing works

A Bacteriophage for Mycobacterium smegmatis.

Gardner, G. M., & Weiser, R. S. (1947) · Experimental Biology and Medicine · doi:10.3181/00379727-66-16037 · Cited by 58 · see citing works

TB: the return of the phage. A review of fifty years of mycobacteriophage research.

McNerney, R. (1999) · PubMed · Cited by 55 · see citing works

Mycobacteriophage Fruitloop gp52 inactivates Wag31 (DivIVA) to prevent heterotypic superinfection

Ko, C.-C., & Hatfull, G. (2018) · Molecular Microbiology · doi:10.1111/mmi.13946 · Cited by 50 · see citing works

The immunity (imm) gene of Escherichia coli bacteriophage T4

Lu, M., & Henning, U. (1989) · Journal of Virology · doi:10.1128/jvi.63.8.3472-3478.1989 · Cited by 49 · see citing works

Lysis to Kill: Evaluation of the Lytic Abilities, and Genomics of Nine Bacteriophages Infective for Gordonia spp. and Their Potential Use in Activated Sludge Foam Biocontrol

Dyson, Z. A., Tucci, J., Seviour, R. J., & Petrovski, S. (2015) · PLoS ONE · doi:10.1371/journal.pone.0134512 · Cited by 49 · see citing works

Innovations in Undergraduate Science Education: Going Viral

Hatfull, G. F. (2015) · Journal of Virology · doi:10.1128/jvi.03003-14 · Cited by 48 · see citing works

The usefulness of phage typing Mycobacterium tuberculosis isolates.

Snider, D. E., Jones, W. D., & Good, R. C. (1984) · PubMed · doi:10.1164/arrd.1984.130.6.1095 · Cited by 48 · see citing works

Mycobacteriophage Vector Systems

Jacobs, W. R., Snapper, S. B., Tuckman, M., & Bloom, B. R. (1989) · Clinical Infectious Diseases · doi:10.1093/clinids/11.supplement_2.s404 · Cited by 48 · see citing works

The site-specific recombination locus of mycobacteriophage Ms6 determines DNA integration at the tRNAAlagene of Mycobacterium spp.

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Next-generation bacteriophage therapeutic systems: CRISPR-based engineering, near-infrared bioimaging, and precision strategies for treating multidrug-resistant and extensively drug-resistant bacterial infections

Piracha, Z. Z., & Saeed, U. (2026) · Frontiers in Microbiology · doi:10.3389/fmicb.2026.1748742 · Cited by 9 · see citing works

Therapeutic Efficacy of Bacteriophages

Ramasamy, P., & Dayanithi, G. (2021) · IntechOpen eBooks · doi:10.5772/intechopen.97619 · Cited by 9 · see citing works

A genome-wide cytotoxicity screen of cluster F1 mycobacteriophage Girr reveals novel inhibitors of Mycobacterium smegmatis growth

Pollenz, R. S., Barnhill, K., Biggs, A., Bland, J., Carter, V., Chase, M. A., Clark, H., Coleman, C., Daffner, M., Deam, C., et al. (2024) · G3 Genes Genomes Genetics · doi:10.1093/g3journal/jkae049 · Cited by 8 · see citing works

Gp29 LysA of mycobacteriophage TM4 can hydrolyze peptidoglycan through an N-acetyl-muramoyl-L-alanine amidase activity

Urdániz, E., Martín, M., Payaslián, F., Defelipe, L. A., Dodes, M., Martínez, M., Alzari, P. M., Cabrera, G., Marti, M. A., & Piuri, M. (2021) · Biochimica et Biophysica Acta (BBA) - Proteins and Proteomics · doi:10.1016/j.bbapap.2021.140745 · Cited by 8 · see citing works

Prophage-Derived Regions in Curtobacterium Genomes: Good Things, Small Packages

Evseev, P. V., Lukianova, A. A., Tarakanov, R. I., Tokmakova, A. D., Popova, A. V., Kulikov, E. E., Shneider, M. M., Ignatov, A. N., & Анатольевич, М. К. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24021586 · Cited by 8 · see citing works

Cryo-EM and cryo-ET reveal the molecular architecture and host interactions of mycobacteriophage Douge

Maharana, J., Wang, C.-H., Tsai, L.-A., Liao, Y., Yang, C., Shen, M. C., Macale, L. S., Tran, T. N., Narsico, J. T., Perez, R. J., et al. (2025) · Cell Reports · doi:10.1016/j.celrep.2025.116057 · Cited by 7 · see citing works

Antibacterial efficacy of mycobacteriophages against virulent Mycobacterium tuberculosis

Jeyasankar, S., Kalapala, Y. C., Sharma, P. R., & Agarwal, R. (2024) · BMC Microbiology · doi:10.1186/s12866-024-03474-3 · Cited by 7 · see citing works

Nanotheranostic management of drug-resistant tuberculosis

Dustachkeer, V. N. A., Nirmal, C. R., Rajadas, S. E., Saadhali, S. A., Kannayan, S., & Padmanaban, V. P. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-819985-5.00004-8 · Cited by 7 · see citing works

Engineering integrative vectors based on phage site-specific recombination mechanism for Lactococcus lactis

Koko, I., Song, A. A., Masarudin, M. J., & Rahim, R. A. (2019) · BMC Biotechnology · doi:10.1186/s12896-019-0575-x · Cited by 7 · see citing works

Elucidating the molecular properties and anti-mycobacterial activity of cysteine peptidase domain of D29 mycobacteriophage endolysin

Gangakhedkar, R., & Jain, V. P. (2024) · Journal of Virology · doi:10.1128/jvi.01328-24 · Cited by 6 · see citing works

Development of an inhalable dry powder of mycobacteriophage D29 using thin-film freeze-drying

Southard, B., Melton, K., Sandoval, M. A., Zaki, R., Williams, R. O., & Cui, Z. (2025) · International Journal of Pharmaceutics · doi:10.1016/j.ijpharm.2025.125919 · Cited by 6 · see citing works

Phages for the treatment of Mycobacterium species

Opperman, C. J., Wojno, J., Goosen, W. J., & Warren, R. M. (2023) · Progress in molecular biology and translational science · doi:10.1016/bs.pmbts.2023.03.016 · Cited by 6 · see citing works

The small genome, virulent, non-contractile tailed bacteriophages that infect Enterobacteriales hosts

Casjens, S., Davidson, A. R., & Grose, J. H. (2022) · Virology · doi:10.1016/j.virol.2022.06.002 · Cited by 6 · see citing works

Insights into the genomic features and lifestyle of B1 subcluster mycobacteriophages

Das, R., Arora, R., Nadar, K., Saroj, S., Singh, A. K., Patil, S. A., Raman, S. K., Misra, A., & Bajpai, U. (2024) · Journal of Basic Microbiology · doi:10.1002/jobm.202400027 · Cited by 5 · see citing works

Discovery of Mycobacterium avium subsp. paratuberculosis Lytic Phages with Extensive Host Range Across Rapid- and Slow-Growing Pathogenic Mycobacterial Species

Golla, A. C., Chaumontet, J., Voorde, R. V., & Danelishvili, L. (2024) · Antibiotics · doi:10.3390/antibiotics13111009 · Cited by 4 · see citing works

Identification of novel genera and subcluster classifications for mycobacteriophages

O'Connell, L. M., Buttimer, C., Bottacini, F., Coffey, A., & O’Mahony, J. (2023) · Microbiome Research Reports · doi:10.20517/mrr.2023.17 · Cited by 4 · see citing works

A novel nucleic acid-binding protein, Gp49, from mycobacteriophage with mycobactericidal activity has the potential to be a therapeutic agent

Ansari, M. S. H., Kumar, N., Jain, S., Balakarthick, N. Y., & Sen, R. (2023) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2023.124025 · Cited by 4 · see citing works

Bacteriophage Diversity

Grose, J. H., & Casjens, S. (2019) · Elsevier eBooks · doi:10.1016/b978-0-12-809633-8.20954-0 · Cited by 4 · see citing works

Insights into the genomic features, lifestyle and therapeutic potential of B1 sub-cluster mycobacteriophagesPreprint

Das, R., Arora, R., Nadar, K., Saroj, S., Singh, A. K., Patil, S. A., Raman, S. K., Misra, A., & Bajpai, U. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.30.542743 · Cited by 4 · see citing works

Mycobacteriophages in the Treatment of Mycobacterial Infections: From Compassionate Use to Targeted Therapy

Druszczyńska, M., Sadowska, B., Zabłotni, A., Zhuravska, L., Kulesza, J., & Fol, M. (2025) · Applied Sciences · doi:10.3390/app15158543 · Cited by 3 · see citing works

Genomic analysis of seven mycobacteriophages identifies three novel species with differing phenotypic stabilities

O'Connell, L. M., Coffey, A., & O’Mahony, J. (2024) · Heliyon · doi:10.1016/j.heliyon.2024.e27932 · Cited by 3 · see citing works

Mycobacteriophage Alexphander Gene 94 Encodes an Essential dsDNA-Binding Protein during Lytic Infection

Qui, E. C., Habtehyimer, F., Germroth, A., Grant, J., Kosanovic, L., Singh, I., & Hancock, S. P. (2024) · International Journal of Molecular Sciences · doi:10.3390/ijms25137466 · Cited by 3 · see citing works

Dual-function oleaginous biocatalysts for non-sterile cultivation and solvent-free biolipid bioextraction to reduce biolipid-based biofuel production costs

Hwangbo, M., Gill, J. J., Young, R., & Chu, K. (2020) · The Science of The Total Environment · doi:10.1016/j.scitotenv.2020.143969 · Cited by 3 · see citing works

Cryo-EM Reveals Structural Diversity in Prolate-headed Mycobacteriophage Mycofy1

Li, X., Shao, Q., Li, L., Xie, L., Ruan, Z., & Fang, Q. (2025) · Journal of Molecular Biology · doi:10.1016/j.jmb.2025.169126 · Cited by 2 · see citing works

Elucidating the role of mycobacteriophage D29-encoded Gp36 in DNA binding and phage gene expression regulation

Pillai, S. S., & Jain, V. P. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf662 · Cited by 2 · see citing works

P3MA: A Promising Mycobacteriophage Infecting Mycobacterium abscessus

Broncano-Lavado, A., Aguilera-Correa, J. J., Roquet, F., Kremer, L., Mediero, A., Seoane‐Blanco, M., van Raaij, M. J., Pagán, I., Esteban, J., & García‐Quintanilla, M. (2025) · Antibiotics · doi:10.3390/antibiotics14080801 · Cited by 2 · see citing works

The peptidoglycan-binding domain of a mycobacterial prophage-encoded LysinB reveals diverse approaches for domain conservation in hydrolases

Das, R., Nadar, K., Arora, R., & Bajpai, U. (2025) · International Journal of Biological Macromolecules · doi:10.1016/j.ijbiomac.2025.147435 · Cited by 2 · see citing works

Smooth-to-rough morphotype switching, a mechanism of phage resistance in Mycobacterium abscessus

Liew, J. H., Norman, A., Illouz, M., Teo, T., Ponti, R. D., Hamela, C., Mohan, L., Lew, R., Ron, C., Low, K. E., et al. (2026) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2531197123 · Cited by 2 · see citing works

Antibiotic Resistance in Mycobacteria

Zeng, J., Tan, X., & Gao, C. (2024) · IntechOpen eBooks · doi:10.5772/intechopen.1007462 · Cited by 2 · see citing works

Discovery and Characterization of Bacteriophage LuckyBarnes

Underwood, S. L., Foto, A., Ray, A. F., Nelms, A. E., Kennedy, K. L., Hartley, S. G., Ryals, L. M., Gurung, C., D’Angelo, W. A., Pope, W. H., et al. (2019) · Microbiology Resource Announcements · doi:10.1128/mra.00330-19 · Cited by 2 · see citing works

Novel Cluster AZ Arthrobacter phages Powerpuff, Lego, and YesChef exhibit close functional relationships with Microbacterium phages

Kapinos, A., Aghamalian, P., Capehart, E., Alag, A. S., Angel, H., Briseno, E., Perez, B. C., Farag, E., Foster, H., Hakim, A., et al. (2022) · PLoS ONE · doi:10.1371/journal.pone.0262556 · Cited by 2 · see citing works

Genome Sequence of Mycobacterium Phage LilHazelnut

Shanks, R. A., Hazel, A. N., Jones, W. H., & Segura‐Totten, M. (2019) · Microbiology Resource Announcements · doi:10.1128/mra.00431-19 · Cited by 2 · see citing works

Exploring Genomic Conservation in Actinobacteriophages with Small GenomesPreprint

Tse, V., Liu, H., Kapinos, A., Torres, C., Cayabyab, B. C. S., Fett, S. N., Nakashima, L. G., Rahman, M., Vargas, A. S., Reddi, K., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.02.05.479200 · Cited by 2 · see citing works

A novel stabilization mechanism accommodating genome length variation in evolutionarily related viral capsidsPreprint

Podgorski, J. M., Podgorski, J., Abad, L., Jacobs‐Sera, D., Freeman, K. G., Brown, C., Hatfull, G. F., Luque, A., & White, S. J. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.11.03.565530 · Cited by 2 · see citing works

Identification and characterization of host-modulating effectors encoded by the Cluster F1 mycobacteriophage NormanBulbieJrPreprint

Wise, B. M., Edwards, K., Jirsa, C. R., Abbruzzese, S., Adebiyi, A., Bapat, S., Barnhardt, T., Bastiampillai, N., Begovic, E., Berchick, M. G., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.64898/2025.12.12.693979 · Cited by 2 · see citing works

From crisis to cure: harnessing the potential of mycobacteriophages in the battle against tuberculosis

Yahia, N. M. B., Shan, M., Zhu, Y. F., Yang, Y., Zhang, S., & Yang, Y. (2024) · Journal of Applied Microbiology · doi:10.1093/jambio/lxae208 · Cited by 1 · see citing works

Expression, purification and functional study of mycobacteriophage D29 histidine-asparagine-histidine endonuclease

Fu, B., Wu, L., Wang, X., & Sun, H. (2025) · Protein Expression and Purification · doi:10.1016/j.pep.2025.106753 · Cited by 1 · see citing works

Biological diversity and perspectives for therapeutic and diagnostic applications of mycobacteriophages in the Russian Federation

Zaychikova, M. V., Avdeev, V. V., Kuznetsova, S., Malakhova, M. V., & Shitikov, E. A. (2026) · Russian Journal of Infection and Immunity · doi:10.15789/2220-7619-bda-18100 · Cited by 1 · see citing works

Exploring the next “phage” of treating non-tuberculous mycobacterial infections

Kevane-Campbell, M., Idris, R., Würstle, S. M., Lieberknecht-Jouy, S. C., Vehreschild, M. J. G. T., Wichelhaus, T. A., & Wetzstein, N. (2026) · Infection · doi:10.1007/s15010-026-02818-7 · Cited by 1 · see citing works

Complete Genome Sequences of Cluster S Mycobacteriophages Beelzebub, Raela, and RedRaider77

Sevcik, K. M., Preston, P., Aulner, M., Noordewier, B., & Tolsma, S. S. (2022) · Microbiology Resource Announcements · doi:10.1128/mra.01173-22 · Cited by 1 · see citing works

Phage therapy with mycobacteriophage as an alternative against antibiotic resistance produced by Mycobacterium tuberculosis

Pamela Rodríguez, H., Angie Changuán, C., & Quiroz, L. X. (2020) · Bionatura · doi:10.21931/rb/2020.05.01.12 · Cited by 1 · see citing works

Genome Sequences of Microbacteriophages Zada and Ioannes

Yaman, R. E., Anderson, J. S., Anderson, T. M., Avalos, M. A., Bangurah, S. K., Dada, K. B., Degener, K. R., Hadeed, M. N., Issa, L. H., Jaeran, A. S., et al. (2020) · Microbiology Resource Announcements · doi:10.1128/mra.01012-20 · Cited by 1 · see citing works

Characterization of novel Actinobacteriophage Giantsbane reveals unexpected cluster AU relationshipsPreprint

Chen, P. Y., Liu, C., Dang, P., Zhang, M., Kapinos, A., Ngo, R., Reddi, K., Parker, J. M., & Freise, A. C. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.01.10.891226

Nine Novel Cluster E Mycobacteriophages Isolated from SoilPreprint

Gaballa, J. M., Freise, A. C., & Parker, J. M. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.03.05.979757

Sequencing and Annotation of Duggie and Hocus, Two Subcluster B1 Mycobacteriophages

Doyle, E., Burke, A. N., Coy, S. J., Miller, H. R., Shatford-Adams, L. M., Petersen, R. M., Wehrs, K. B., & Bowder, D. M. (2020) · Microbiology Resource Announcements · doi:10.1128/mra.00432-20

Novel Cluster AZ Arthrobacter phages Powerpuff, Lego, and YesChef exhibit close functional relationships with Microbacterium phagesPreprint

Kapinos, A., Aghamalian, P., Capehart, E., Alag, A. S., Angel, H., Briseno, E., Farag, E., Foster, H., Hakim, A., Hernandez-Casas, D., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.21.392811

Genome Sequence and Characteristics of Cluster C1 Mycobacterium smegmatis Phage EasyJones

Amaya, I., Bui, D., Egbunine, A., Mushrush, E., Viland, M., Jacobs-Sera, D., Heller, D. M., & Sivanathan, V. (2021) · Microbiology Resource Announcements · doi:10.1128/mra.00997-21

Genome Sequence and Characteristics of Cluster C1 Mycobacterium smegmatis Phage EasyJones

Amaya, I., Bui, D. T., Egbunine, A., Mushrush, E., Viland, M., Jacobs‐Sera, D., Heller, D. M., & Sivanathan, V. (2021) · Maryland Shared Open Access Repository (USMAI Consortium) · doi:10.13016/m2fwl3-tdv6

Complete Genome Sequence of Cluster C Mycobacteriophage McGee

Nsa, I. Y., Odunsi, A. A., Okorie, C. V., Bamisaye, S. D., Abass, R. O., Amadi, D. O., Ebitigha, J. E., Kadiri, O. O., Makinwa, T. M., Olaiya, S. O., et al. (2022) · Microbiology Resource Announcements · doi:10.1128/mra.00768-22

Genomic Characterization of the Cluster CZ4 Gordonia terrae Phage Oregano

Lembree, H., Goktug, O., Royal, D., Russell, A., Savage, A., Sisco, M., Waltner, M., Chun, V., Neely, M. N., & Molloy, S. D. (2022) · Microbiology Resource Announcements · doi:10.1128/mra.00679-22

Pangenome-wide association study reveals selective absence of CRISPR genes (Rv2816c-19c) in drug-resistant Mycobacterium tuberculosisPreprint

Bhalla, N., & Nanda, R. K. (2024) · medRxiv · doi:10.1101/2024.02.06.24302273

Unlocking prophage potential: In silico and experimental analysis of a novel Mycobacterium fortuitum LysinB containing a peptidoglycan-binding domainPreprint

Das, R., Nadar, K., Arora, R., & Bajpai, U. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.02.15.580446

Complete genome sequence of Mycobacterium smegmatis phage Rummer, a subcluster A3 actinophage

Bailey, D. S., Dotson, D. R., Berkes, C. A., Agbede, O., Augustin, M., Blackman-Murray, I., Chambers, T., Felber, N., Fleming, D., Frazier, L., et al. (2024) · Microbiology Resource Announcements · doi:10.1128/mra.01268-23

Virtual Screening of CPP Conjugated Peptide as QcrB BCC Protein Inhibitors of Mycobacterium tuberculosis Bacteria

Muttaqin, M. I., Huang, M., & Tambunan, U. S. F. (2024) · OnLine Journal of Biological Sciences · doi:10.3844/ojbsci.2024.427.435

Introducing Casbah, Kronus, and MmasiCarm, Members of the Mycobacteriophage Subcluster B3

Delesalle, V. A., ANKERIASNIEMI, R., Lewis, C. M., Mody, J. M., Roy, A. M., Sarvis, W. A., Vo, D. D., Walsh, A. E., & Zappia, R. J. (2024) · PHAGE · doi:10.1089/phage.2024.0004

Mycobacteriophages: From Petri dish to patient

Hatfull, G. F. (2022) · PLOS Pathogens · doi:10.1371/journal.ppat.1010602 · Cited by 74 · see citing works

Articles of Significant Interest Selected from This Issue by the Editors

(2012) · Journal of Virology · doi:10.1128/jvi.07185-11

The Secret Lives of Mycobacteriophages

Hatfull, G. F. (2012) · Advances in virus research · doi:10.1016/b978-0-12-394621-8.00015-7 · Cited by 131 · see citing works

Editor's note

(2001) · Asthma Magazine · doi:10.1067/mas.2001.118831

Expanding the diversity of mycobacteriophages: insights into genome architecture and evolution.

H. Pope, W., Jacobs‐Sera, D., A. Russell, D., L. Peebles, C., A. Alcoser, T., M. Alexander, L., M. Bayles, I., Budwal, K., W. Campbell, I., B. Cohen, L., et al. (2018) · Figshare · doi:10.1184/r1/6098498