Replication Fork Stalling at Natural Impediments

A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes

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The complete genome sequence of Escherichia coli K-12.

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DNA Repair and Mutagenesis

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Comprehensive Identification of Cell Cycle–regulated Genes of the YeastSaccharomyces cerevisiaeby Microarray Hybridization

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Identification of a gene (FMR-1) containing a CGG repeat coincident with a breakpoint cluster region exhibiting length variation in fragile X syndrome

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A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes. The Huntington's Disease Collaborative Research Group.

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The human mutator gene homolog MSH2 and its association with hereditary nonpolyposis colon cancer

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Friedreich's Ataxia: Autosomal Recessive Disease Caused by an Intronic GAA Triplet Repeat Expansion

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Molecular basis of myotonic dystrophy: Expansion of a trinucleotide (CTG) repeat at the 3′ end of a transcript encoding a protein kinase family member

Brook, J. D., McCurrach, M. E., Harley, H. G., Buckler, A., Church, D. M., Aburatani, H., Hunter, K. W., Stanton, V. P., Thirion, J., Hudson, T. J., et al. (1992) · Cell · doi:10.1016/0092-8674(92)90154-5 · Cited by 2,754

Checkpoint phosphorylation sites on budding yeast Rif1 protect nascent DNA from degradation by Sgs1-Dna2

Gali, V. K., Monerawela, C., Laksir, Y., Hiraga, S., & Donaldson, A. D. (2023) · PLoS Genetics · doi:10.1371/journal.pgen.1011044 · Cited by 4

Bacillus subtilis RadA/Sms-Mediated Nascent Lagging-Strand Unwinding at Stalled or Reversed Forks Is a Two-Step Process: RadA/Sms Assists RecA Nucleation, and RecA Loads RadA/Sms

Torres, R., Carrasco, B., & Alonso, J. C. (2023) · International Journal of Molecular Sciences · doi:10.3390/ijms24054536 · Cited by 3

Recombinogenic Conditions Influence Partner Choice in Spontaneous Mitotic Recombination

Cauwood, J. D., Johnson, A. L., Widger, A., & Rita, S. (2013) · PLoS Genetics · doi:10.1371/journal.pgen.1003931 · Cited by 3

Rescuing Replication from Barriers: Mechanistic Insights from Single-Molecule Studies

Sun, B. (2019) · Molecular and Cellular Biology · doi:10.1128/mcb.00576-18 · Cited by 3

Linking Dynamic DNA Secondary Structures to Genome InstabilityPreprint

Matos-Rodrigues, G. E., van Wietmarschen, N., Wu, W., Tripathi, V., Koussa, N. C., Pavani, R., Nathan, W. J., Belinky, F., Mohammed, A., Напиерала, М., et al. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.01.19.476973 · Cited by 3

Mechanisms of genome instability in Hutchinson-Gilford progeria

Zhang, H., & Cao, K. (2016) · Frontiers in Biology · doi:10.1007/s11515-016-1435-x · Cited by 2

Ni(II) Cylinders Damage DNA in Cancer Cells and Preferentially Bind Y‐Shaped DNA Three‐Way Junctions Blocking DNA Synthesis

Malina, J., Kostrhunová, H., & Brabec, V. (2024) · Small · doi:10.1002/smll.202406814 · Cited by 2

Regulation of replication timing in Saccharomyces cerevisiae

Berners-Lee, R., Gilmore, E., Berkemeier, F., & Boemo, M. A. (2025) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1013066 · Cited by 2

Ongoing structural changes highlight the dynamic nature of chloroplast genomes

Witharana, E. P., Kotoda, N., Seki, K., Fukuda, S., & Nagano, Y. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag117 · Cited by 3

Exceptional origin activation revealed by comparative analysis in two laboratory yeast strains

Peng, J., Joshi, I., Alvino, G. M., Kwan, E. X., & Feng, W. (2022) · PLoS ONE · doi:10.1371/journal.pone.0263569 · Cited by 2

A local ATR-dependent checkpoint pathway is activated by a site-specific replication fork block in human cells

Ahmed‐Seghir, S., Jalan, M., Grimsley, H. E., Sharma, A., Twayana, S., Kosiyatrakul, S. T., Thompson, C. M., Schildkraut, C. L., & Powell, S. N. (2023) · eLife · doi:10.7554/elife.87357 · Cited by 2

DNA synthesis across DNA hairpins by human PrimPol

Boldinova, E. O., Baranovskiy, A. G., Esyunina, D., Tahirov, T. H., & Makarova, А. V. (2024) · DNA repair · doi:10.1016/j.dnarep.2024.103741 · Cited by 2

Dynamics of replication timing during mammalian development

Nakatani, T. (2025) · Trends in Genetics · doi:10.1016/j.tig.2025.01.010 · Cited by 2

Methods and Strategies to Determine Epigenetic Variation in Human Disease

Watanabe, Y., & Maekawa, M. (2012) · Elsevier eBooks · doi:10.1016/b978-0-12-388415-2.00002-0 · Cited by 2

Replication Fork Barriers and Topological Barriers: Progression of DNA Replication Relies on DNA Topology Ahead of Forks

Schvartzman, J. B., Hernández, P., & Krimer, D. B. (2020) · BioEssays · doi:10.1002/bies.201900204 · Cited by 2

Methods for the detection of DNA damage

Firsanov, D., Kulikova, V., Solovjeva, L., Mikhailov, V. M., Nikiforov, A. A., & Svetlova, M. (2021) · Elsevier eBooks · doi:10.1016/b978-0-323-85679-9.00036-2 · Cited by 2

Suppressors of Break-Induced Replication in Human Cells

Rider, S. D., Damewood, F. J., Gadgil, R. Y., Hitch, D. C., Alhawach, V., Shrestha, R., Shanahan, M., Zavada, N., & Leffak, M. (2023) · Genes · doi:10.3390/genes14020398 · Cited by 2

Checkpoint phosphorylation sites on budding yeast Rif1 protect nascent DNA from degradation by Sgs1-Dna2Preprint

Monerawela, C., Hiraga, S., & Donaldson, A. D. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.06.25.170571 · Cited by 2

Human primosome requires replication protein A when copying DNA with inverted repeatsPreprint

Baranovskiy, A. G., Morstadt, L. M., Romero, E. E., Babayeva, N. D., & Tahirov, T. H. (2024) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2024.03.11.584335 · Cited by 2

The human primosome requires replication protein A when copying DNA with inverted repeats

Baranovskiy, A. G., Morstadt, L. M., Romero, E. E., Babayeva, N. D., & Tahirov, T. H. (2025) · Nucleic Acids Research · doi:10.1093/nar/gkaf799 · Cited by 1

The RecBCD complex interacts directly with the DNA sliding clamp in Escherichia coli

Riisnæs, I. M. M., Ræder, S. B., Simonsen, S., Vikedal, K., Backe, P. H., Johnsen, L., Bjørås, M., Booth, J. A., Kragelund, B. B., Skarstad, K., et al. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag570 · Cited by 1

Kinetochore mutations and histone phosphorylation pattern changes accompany holo- and macro-monocentromere evolution

Kuo, Y., Neumann, P., Chen, J., Fuchs, J., Schubert, V., Kumke, K., Sader, M., Melzer, M., Zhu, Z., Himmelbach, A., et al. (2025) · Nature Communications · doi:10.1038/s41467-025-67524-8 · Cited by 4

Opposing regulation by Rev1 of DNA polymerase zeta activity on damaged versus undamaged DNA

Bezalel‐Buch, R., Stith, C. M. W., Makarova, А. V., Binz, S. K., & Burgers, P. (2026) · Nucleic Acids Research · doi:10.1093/nar/gkag568 · Cited by 1

Giant yeast cells with nonrecyclable ribonucleotide reductase

Ma, É., Goldar, A., Verbavatz, J., & Marsolier‐Kergoat, M. (2011) · Molecular Genetics and Genomics · doi:10.1007/s00438-011-0613-4 · Cited by 1

Eukaryote DNA Replication and Recombination: an Intimate Association

Ramsay, J., Al-Zeer, K., & Jacob, Z. (2011) · InTech eBooks · doi:10.5772/19995 · Cited by 1

Mathematical Models of Prebiotic Replication of Informational Molecules

Harris, K., & Chen, I. A. (2012) · Cellular origin and life in extreme habitats · doi:10.1007/978-94-007-2941-4_4 · Cited by 1

Inducing a Site Specific Replication Blockage in E. coli Using a Fluorescent Repressor Operator System

Mettrick, K. A., Lawrence, N., Mason, C. E., Weaver, G. M., Corocher, T., & Grainge, I. (2016) · Journal of Visualized Experiments · doi:10.3791/54434 · Cited by 1

Proliferating Cell Nuclear Antigen (PCNA) Localization in the Ovaries of Buffalo, Dog and Pig by Immunohistochemistry

Botlagunta, S., Pathipati, D., & Kumar, A. V. N. S. (2022) · Indian Journal of Animal Research · doi:10.18805/ijar.b-4672 · Cited by 1

The Escherichia coli serS gene promoter region overlaps with the rarA gene

Jain, K., Stanage, T. H., Wood, E. A., & Cox, M. M. (2022) · PLoS ONE · doi:10.1371/journal.pone.0260282 · Cited by 1

Organic-soluble cytosine derivatives for studying base-pair interactions in nonaqueous solution

Wang, Z., Tamminga, M. T., Winiarz, P., Wisner, J. A., & Hudson, R. H. E. (2024) · Canadian Journal of Chemistry · doi:10.1139/cjc-2023-0144 · Cited by 1

Chromosome Break ☆

Cannan, W. J., & Pederson, D. S. (2017) · Elsevier eBooks · doi:10.1016/b978-0-12-809633-8.06208-7 · Cited by 2

The characterisation of the interaction between PcrA and RNA polymerase

Harriott, K. (2012) · NOVA (University of Newcastle Australia) · Cited by 1

SSB facilitates fork substrate discrimination by PriAPreprint

Tan, H. Y., & Bianco, P. R. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.23.394411 · Cited by 1

A local ATR-dependent checkpoint pathway is activated by a site-specific replication fork block in human cellsPreprint

Ahmed‐Seghir, S., Jalan, M., Grimsley, H. E., Sharma, A., Twayana, S., Kosiyatrakul, S. T., Thompson, C. M., Schildkraut, C. L., & Powell, S. N. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.03.26.534293 · Cited by 1

Experimental investigations of mastrevirus molecular biology and evolution

van der Walt, E. (2008) · Open University of Cape Town (University of Cape Town)

Replication fork stability in mammalian cells

Elvers, I. (2011) · KTH Publication Database DiVA (KTH Royal Institute of Technology)

IDENTIFICATION OF ACTIVITIES INVOLVED IN CAG/CTG REPEAT INSTABILITY

Chan, N. L. S. (2011) · UKnowledge (University of Kentucky)

Oxidative DNA Damage Modulates Trinucleotide Repeat Instability Via DNA Base Excision Repair

Xu, M. (2014) · FIU - Digital Commons (Florida International University) · doi:10.25148/etd.fi14110704

DNA-Protein Complexes Created by Mutant EcoRII Methyltransferase and Quinolone Antibiotics in Escherichia coli

Henderson, M. L. (2014) · DukeSpace (Duke University)

TARTU ÜLIKOOL LOODUS- JA TEHNOLOOGIATEADUSKOND MOLEKULAAR- JA RAKUBIOLOOGIA INSTITUUT

Guske, H. (2014)

Transkriptsiooni ja transkriptsiooniga seotud DNA reparatsiooni mõju mutatsiooniprotsessidele bakteris Pseudomonas putida

Kivisaar, M. (2013)

DIFFERENTIAL INTERACTIONS BETWEEN THE HOLLIDAY JUNCTION-BINDING ANTIMICROBIAL PEPTIDE WRWYCR AND TWO DNA GYRASE INHIBITORS: WRWYCR'S EFFECTS ON MEMBRANE INTEGRITY AND DRUG EFFLUX

Naïli, I. (2012)

Epigenetic inheritance in Saccharomyces cerevisiae: the competition between CAF-I and Rrm3p for the DNA sliding clamp PCNA

Wyse, B. A. (2015) · The Atrium (University of Guelph)

Cellular Effects of Replicating a Polypurine-Polypyrimidine Sequence and the Interactions of DUE-B with Replication Proteins

Myers, S. L. (2010) · Journal of Bioresource Management

Cac1p and Rrm3p alter the frequency of epigenetic conversions at the telomeres in S.cerevisiae

Oshidari, R. (2014) · The Atrium (University of Guelph)

TARTU ÜLIKOOL LOODUS- JA TEHNOLOOGIATEADUSKOND MOLEKULAAR- JA RAKUBIOLOOGIA INSTITUUT GENEETIKA ÕPPETOOL

Ilmjärv, T. (2013)

Deregulation of the Replisome Factor MCMBP Prompts Oncogenesis in Colorectal Carcinomas through Chromosomal

Quimbaya, M., Denecker, G., Craene, B. D., Roelandt, R., Declercq, W., Sagaert, X., Veylder, L. D., & Berx, G. (2014)

UNIVERSITÁ DEGLI STUDI DI MILANO-BICOCCA Facoltà di Scienze Matematiche Fisiche e Naturali Dipartimento di Biotecnologie e Bioscienze Dottorato in Biotecnologie industriali, XXVI ciclo

Longhese, M. P. (2013)

ATRX Protects Cells Against Replication-Induced Genomic Instability

Ivanochko, D. (2016) · uO Research (University of Ottawa) · doi:10.20381/ruor-5445

Biochemical and Biophysical Study of the Polymorphic G-Quadruplexes Formed by the Insulin Linked Polymorphic Region

Schonhoft, J. D. (2009) · OhioLink ETD Center (Ohio Library and Information Network)

Function of the Rad53 Checkpoint Kinase Molecular Basis of the Essential S Phase

Pellicioli, A., Chabes, A., Tsai, M., Wang, S., Fazio, A., Hammet, A., Hoch, N. C., & Buckland, R. J. (2014)

The helicases DinG, Rep and UvrD cooperate to promote replication across transcription units in vivo This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits distribution,andreproductioninanymedium,providedtheoriginalauthorandsourcearecredited.Thislicensedoesnot permit commercial exploitation without specific permission.

Boubakri, H., & Viguera, E. (2010)

EXPLORING GENOME INTEGRITY PATHWAYS IN SACCHAROMYCES CEREVISIAE

Shanmugan, M. K. (2014) · Archivio Istituzionale della Ricerca (Universita Degli Studi Di Milano) · doi:10.13130/shanmugam-muthukumar_phd2014-01-24

Oncofetal HMGA2 as a key regulator of telomere stability through control of DNA topology

Ramani, P. D. (2018) · doi:10.32657/10220/46217

Timeless couples G quadruplex detection with processing by DDX11 during DNA replicationPreprint

Lerner, L. K., Holzer, S., Kilkenny, M. L., Murat, P., Šviković, S., Schiavone, D., Bittleston, A., Maman, J. D., Branzei, D., Stott, K. M., et al. (2019) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/826578

Immunohistochemical Localization of Proliferating Cell Nuclear Antigen (PCNA) in the Ovaries of Sheep and Goat

Supriya, B., Pathipati, D., & Kumar, A. V. N. S. (2020) · International Journal of Current Microbiology and Applied Sciences · doi:10.20546/ijcmas.2020.906.321

DisA limits RecA- and RadA/Sms-mediated replication fork remodelling to prevent genome instabilityPreprint

Torres, R., & Alonso, J. C. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.11.23.394155

Chromatin structuring factor HMGA2 controls subtelomere stability and cancer chemosensitivity

Ahmed, S. M. (2020) · DR-NTU (Nanyang Technological University) · doi:10.32657/10356/137770

Faculty Opinions recommendation of H3K4 methylation at active genes mitigates transcription-replication conflicts during replication stress.

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The high-resolution in vivo measurement of replication fork velocity and pausing by lag-time analysisPreprint

Huang, D., Johnson, A. E., Sim, B. S., Lo, T. W., Merrikh, H., & Wiggins, P. A. (2022) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2022.08.13.503874

Towards a synthetic cell: designing, testing and optimizing functional genomic modules in E. coli

Houkes, J. (2023) · doi:10.18174/582244

A local ATR-dependent checkpoint pathway is activated by a site-specific replication fork block in human cellsPreprint

Ahmed‐Seghir, S., Jalan, M., Grimsley, H. E., Sharma, A., Twayana, S., Kosiyatrakul, S. T., Thompson, C. M., Schildkraut, C. L., & Powell, S. N. (2023) · eLife · doi:10.7554/elife.87357.1

A local ATR-dependent checkpoint pathway is activated by a site-specific replication fork block in human cellsPreprint

Ahmed‐Seghir, S., Jalan, M., Grimsley, H. E., Sharma, A., Twayana, S., Kosiyatrakul, S. T., Thompson, C. M., Schildkraut, C. L., & Powell, S. N. (2023) · doi:10.7554/elife.87357.2

Kinetochore mutations and histone phosphorylation pattern changes preceded holo- and macro-monocentromere evolutionPreprint

Kuo, Y., Neumann, P., Chen, J., Fuchs, J., Schubert, V., Kumke, K., Sader, M., Melzer, M., Zhu, Z., Himmelbach, A., et al. (2025) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2025.05.06.652342

Conditional Expression of Cas9 and dCas9 in Lucilia cuprina Reveals dCas9-Associated Lethality

Kriete, A. L., Basika, T., Novas, R., Mathieson, O. L., Belikoff, E. J., Kleiner, M., & Scott, M. J. (2026) · The CRISPR Journal · doi:10.1177/25731599261436373

Short tandem repeats and tandem repeat disorders

Ma, R., Liu, T., & Zhu, B. (2025) · Scientia Sinica Vitae · doi:10.1360/ssv-2025-0129

Organisation du chromosome d' Escherichia coli en macrodomaines et régions non-structurées

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Impact de l'haploinsuffisance d'ATR/CHK1 et de la Topoisomérase 1 sur la réplication et les Sites Fragiles Communs.

Lemacon, D. S. (2014) · theses.fr (ABES) · doi:10.70675/7fd8b535z1f0cz4646zb10eze941144f55e2

Molecular characterization of a bacterial DNA segregation apparatus

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The roles of FANCD2 in the maintenance of common fragile site stability

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Impact phénotypique des réarrangements chromosomiques et évolution des génomes de levures

Fleiss, A. (2018) · theses.fr (ABES) · doi:10.70675/ef380bd2z14d5z4771za3e2z82b040f5da53

MBNL derivatives for therapeutic application in myotonic dystrophy

Matłoka, M. (2019) · theses.fr (ABES) · doi:10.70675/3724d494z55b1z4736zac15z5caf250a9f6c

Characterization of Physical and Functional Interactions Between the Chromatin Assembly Factor 1, CAF-1, and Homologous Recombination Factors During DNA Repair

Dai, D. (2018) · theses.fr (ABES) · doi:10.70675/237497b9z5dd9z4a6bz8333z0c7b5820dea3

Spatio-temporal regulation of telomere recombination during replicative senescence

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Gene editing approaches of microsatellite disorders : shortening expanded repeats

Poggi, L. (2020) · theses.fr (ABES) · doi:10.70675/741f0470z28a0z4c3bz9e75ze578bdc49074 · Cited by 1

Understanding DNA replication of Plasmodium falciparum

Castellano, C. M. (2023) · theses.fr (ABES) · doi:10.70675/c4408455z84e5z4a9dzb004zc96374927bb8

Spatiotemporal characterization of single-stranded DNA Intermediates after UV Irradiation: I: Post-replication gaps formed during slow growth

Sharma, N., Cherry, M. E., Henry, C., Wood, E. A., Robinson, A., van Oijen, A. M., Ghodke, H. B., & Cox, M. M. (2026) · PLoS Genetics · doi:10.1371/journal.pgen.1012109

Influence of Magneto-Mechanical Stress on Cellular Membranes, Ion Channel Activity, and Gene Expression Dynamics

Zablotskii, V., & Polyakova, T. (2026) · Results and problems in cell differentiation · doi:10.1007/978-3-032-19509-8_8

Chirality affects biological activity and interactions of azacryptands with alternative DNA structures

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Optical mapping reveals a higher level of large‐scale structural variants in a family with paternally transmitted myotonic dystrophy and independent Parkinson's disease

Hasan, M. M., Craddock, J., Gong, T., Lyons, R. J., Stevanovski, I., Chintalaphani, S. R., Deveson, I. W., Jaratlerdsiri, W., Kumar, K. R., & Hayes, V. M. (2026) · The Journal of Pathology · doi:10.1002/path.70084

Regulation of DNA Replication through Natural Impediments in the Eukaryotic Genome

Gadaleta, M. C., & Noguchi, E. (2017) · Genes · doi:10.3390/genes8030098 · Cited by 64

Impediments to replication fork movement: stabilisation, reactivation and genome instability

Lambert, S., & Carr, A. M. (2013) · Chromosoma · doi:10.1007/s00412-013-0398-9 · Cited by 117

Eukaryotic Replication Barriers: How, Why and Where Forks Stall

Jacob, Z., Emma, L. B., & Ramsay, J. (2011) · InTech eBooks · doi:10.5772/20383 · Cited by 10

FBH1: A new checkpoint factor

Boyer, A.-S., & Sørensen, C. S. (2015) · Oncotarget · doi:10.18632/oncotarget.5099

Cellular regulation and stability of DNA replication forks in eukaryotic cells

Li, X., Wang, L., Liu, X., Zheng, Z., & Kong, D. (2022) · DNA repair · doi:10.1016/j.dnarep.2022.103418 · Cited by 4