The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
A Novel Sparse Compositional Technique Reveals Microbial Perturbations
Open accessAbstract
By accounting for the sparse compositional nature of microbiome data sets, robust Aitchison PCA can yield high discriminatory power and salient feature ranking between microbial niches. The software to perform this analysis is available under an open-source license and can be obtained at https://github.com/biocore/DEICODE ; additionally, a QIIME 2 plugin is provided to perform this analysis at https://library.qiime2.org/plugins/q2-deicode .
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Cites
Matplotlib: a 2D graphics environment
Hunter, J. D. (2007) · Computing in Science & Engineering · doi:10.1109/mcse.2007.55 · Cited by 39,249
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Bolyen, E., Rideout, J. R., Dillon, M. R., Bokulich, N. A., Abnet, C. C., Al-Ghalith, G. A., Alexander, H., Alm, E. J., Arumugam, M., Asnicar, F., et al. (2019) · Nature Biotechnology · doi:10.1038/s41587-019-0209-9 · Cited by 23,742
Self-citationUniFrac: a New Phylogenetic Method for Comparing Microbial Communities
Lozupone, C., & Knight, R. (2005) · Applied and Environmental Microbiology · doi:10.1128/aem.71.12.8228-8235.2005 · Cited by 8,227
Self-citationLauber, C. L., Hamady, M., Knight, R., & Fierer, N. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.00335-09 · Cited by 4,063
Self-citationSuccession of microbial consortia in the developing infant gut microbiome
Koenig, J. E., Spor, A., Scalfone, N., Fricker, A. D., Stombaugh, J., Knight, R., Angenent, L. T., & Ley, R. E. (2011) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1000081107 · Cited by 2,540
Self-citationDeblur Rapidly Resolves Single-Nucleotide Community Sequence Patterns
Amir, A., McDonald, D., Navas-Molina, J. A., Kopylova, E., Morton, J. T., Zech Xu, Z., Kightley, E. P., Thompson, L. R., Hyde, E. R., Gonzalez, A., et al. (2017) · mSystems · doi:10.1128/msystems.00191-16 · Cited by 1,881
Self-citationThe gut microbiome in atherosclerotic cardiovascular disease
Jie, Z., Xia, H., Zhong, S.-L., Feng, Q., Li, S., Liang, S., Zhong, H., Liu, Z., Gao, Y., Zhao, H., et al. (2017) · Nature Communications · doi:10.1038/s41467-017-00900-1 · Cited by 1,638
Why and Where: A Characterization of Data Provenance
Buneman, P., Khanna, S., & Wang-Chiew, T. (2001) · Lecture Notes in Computer Science · doi:10.1007/3-540-44503-x_20 · Cited by 1,334
Cited by
Estaki, M., Jiang, L., Bokulich, N. A., McDonald, D., González, A., Kosciolek, T., Martino, C., Zhu, Q., Birmingham, A., Vázquez‐Baeza, Y., et al. (2020) · Current Protocols in Bioinformatics · doi:10.1002/cpbi.100 · Cited by 565
Self-citationPan-cancer analyses reveal cancer-type-specific fungal ecologies and bacteriome interactions
Narunsky-Haziza, L., Sepich-Poore, G. D., Livyatan, I., Asraf, O., Martino, C., Nejman, D., Gavert, N., Stajich, J. E., Amit, G., González, A., et al. (2022) · Cell · doi:10.1016/j.cell.2022.09.005 · Cited by 538
Self-citationMicrobial hitchhikers harbouring antimicrobial-resistance genes in the riverine plastisphere
Zadjelovic, V., Wright, R. J., Borsetto, C., Quartey, J., Cairns, T. N., Langille, M. G. I., Wellington, E. M. H., & Christie-Oleza, J. A. (2023) · Microbiome · doi:10.1186/s40168-023-01662-3 · Cited by 87
Wang, L., Wang, L., Tian, P., Wang, B., Cui, S., Zhao, J., Zhang, H., Qian, L., Wang, Q., Chen, W., et al. (2022) · Food & Function · doi:10.1039/d1fo03896f · Cited by 81
Nonalcoholic Steatohepatitis and HCC in a Hyperphagic Mouse Accelerated by Western Diet
Ganguly, S., Muench, G. A., Shang, L., Rosenthal, S. B., Rahman, G., Wang, R., Wang, Y., Kwon, H. C., Diomino, A. M., Kisseleva, T., et al. (2021) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2021.05.010 · Cited by 50
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Metadata
- Authors
- Martino, C., Morton, J. T., Marotz, C. A., Thompson, L. R., Tripathi, A., Knight, R., & Zengler, K.
- Venue
- mSystems
- Publisher
- American Society for Microbiology
- Published
- 2019-02-26
- Volume
- 4
- Issue
- 1
- ISSN
- 2379-5077 (ISSN-L)
- OpenAlex
- W2914348147
- Cited by
- 556
- References
- 8
- FWCI
- 15.11
- Type
- journal article
- Language
- en
- Open access
- gold
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- Martino, C., Morton, J. T., Marotz, C. A., Thompson, L. R., Tripathi, A., Knight, R., & Zengler, K. (2019). A Novel Sparse Compositional Technique Reveals Microbial Perturbations. mSystems. https://doi.org/10.1128/msystems.00016-19
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