The DOI matches its Crossref record; 2 of the 2 references it cites were found in a registry or an index.
Blast2GO: A Comprehensive Suite for Functional Analysis in Plant Genomics
Open accessAbstract
Functional annotation of novel sequence data is a primary requirement for the utilization of functional genomics approaches in plant research. In this paper, we describe the Blast2GO suite as a comprehensive bioinformatics tool for functional annotation of sequences and data mining on the resulting annotations, primarily based on the gene ontology (GO) vocabulary. Blast2GO optimizes function transfer from homologous sequences through an elaborate algorithm that considers similarity, the extension of the homology, the database of choice, the GO hierarchy, and the quality of the original annotations. The tool includes numerous functions for the visualization, management, and statistical analysis of annotation results, including gene set enrichment analysis. The application supports InterPro, enzyme codes, KEGG pathways, GO direct acyclic graphs (DAGs), and GOSlim. Blast2GO is a suitable tool for plant genomics research because of its versatility, easy installation, and friendly use.
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Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Cited by
InterPro in 2019: improving coverage, classification and access to protein sequence annotations
Mitchell, A. L., Attwood, T. K., Babbitt, P. C., Blum, M., Bork, P., Bridge, A., Brown, S. D., Chang, H.-Y., El-Gebali, S., Fraser, M. I., et al. (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1100 · Cited by 1,426
Borowiec, M. L., Lee, E. K., Chiu, J. C., & Plachetzki, D. C. (2015) · doi:10.1101/013946 · Cited by 172
Compact genome of the Antarctic midge is likely an adaptation to an extreme environment
Kelley, J. L., Peyton, J. T., Fiston-Lavier, A.-S., Teets, N. M., Yee, M.-C., Johnston, J. S., Bustamante, C. D., Lee, R. E., & Denlinger, D. L. (2014) · Nature Communications · doi:10.1038/ncomms5611 · Cited by 171
Richards, T. A., Leonard, G., Soanes, D. M., & Talbot, N. J. (2011) · Fungal Biology Reviews · doi:10.1016/j.fbr.2011.04.003 · Cited by 140
Singer, A., Poschmann, G., Mühlich, C., Valadez-Cano, C., Hänsch, S., Hüren, V., Rensing, S. A., Stühler, K., & Nowack, E. C. M. (2017) · Current Biology · doi:10.1016/j.cub.2017.08.010 · Cited by 116
Metadata
- Authors
- Conesa, A., & Götz, S.
- Venue
- International Journal of Plant Genomics
- Publisher
- Hindawi Limited
- Published
- 2008-04-30
- Volume
- 2008
- Pages
- 1-12
- ISSN
- 1687-5370 (ISSN-L)
- 1687-5389
- OpenAlex
- W2001338440
- Cited by
- 2,151
- References
- 2
- FWCI
- 11.54
- Type
- journal article
- Language
- en
- Open access
- hybrid
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