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YEATS4 Is a Novel Oncogene Amplified in Non–Small Cell Lung Cancer That Regulates the p53 Pathway

Pikor, Larissa A., Lockwood, William W., Thu, Kelsie L., Vucic, Emily A., Chari, Raj, Gazdar, Adi F., Lam, Stephen, Lam, Wan L.·2013·Cancer Research

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Abstract

Genetic analyses of lung cancer have helped found new treatments in this disease. We conducted an integrative analysis of gene expression and copy number in 261 non–small cell lung cancers (NSCLC) relative to matched normal tissues to define novel candidate oncogenes, identifying 12q13-15 and more specifically the YEATS4 gene as amplified and overexpressed in ∼20% of the NSCLC cases examined. Overexpression of YEATS4 abrogated senescence in human bronchial epithelial cells. Conversely, RNAi-mediated attenuation of YEATS4 in human lung cancer cells reduced their proliferation and tumor growth, impairing colony formation and inducing cellular senescence. These effects were associated with increased levels of p21WAF1 and p53 and cleavage of PARP, implicating YEATS4 as a negative regulator of the p21-p53 pathway. We also found that YEATS4 expression affected cellular responses to cisplastin, with increased levels associated with resistance and decreased levels with sensitivity. Taken together, our findings reveal YEATS4 as a candidate oncogene amplified in NSCLC, and a novel mechanism contributing to NSCLC pathogenesis. Cancer Res; 73(24); 7301–12. ©2013 AACR.

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Research works printed but not linked: 47

  1. Hammerman, 2012, Comprehensive genomic characterization of squamous cell lung cancers, Nature, 489, 519, 10.1038/nature11404 · DOI · Paper page
  2. Kohno, 2012, KIF5B-RET fusions in lung adenocarcinoma, Nat Med, 18, 375, 10.1038/nm.2644 · DOI · Paper page
  3. Takeuchi, 2012, RET, ROS1 and ALK fusions in lung cancer, Nat Med, 18, 378, 10.1038/nm.2658 · DOI · Paper page
  4. Pao, 2012, Chipping away at the lung cancer genome, Nat Med, 18, 349, 10.1038/nm.2697 · DOI
  5. Lockwood, 2008, DNA amplification is a ubiquitous mechanism of oncogene activation in lung and other cancers, Oncogene, 27, 4615, 10.1038/onc.2008.98 · DOI
  6. Weir, 2007, Characterizing the cancer genome in lung adenocarcinoma, Nature, 450, 893, 10.1038/nature06358 · DOI · Paper page
  7. Bass, 2009, SOX2 is an amplified lineage-survival oncogene in lung and esophageal squamous cell carcinomas, Nat Genet, 41, 1238, 10.1038/ng.465 · DOI
  8. Hirsch, 2002, Evaluation of HER-2/neu gene amplification and protein expression in non-small cell lung carcinomas, Br J Cancer, 86, 1449, 10.1038/sj.bjc.6600286 · DOI
  9. Okudela, 2007, PIK3CA mutation and amplification in human lung cancer, Pathol Int, 57, 664, 10.1111/j.1440-1827.2007.02155.x · DOI
  10. Onozato, 2009, Activation of MET by gene amplification or by splice mutations deleting the juxtamembrane domain in primary resected lung cancers, J Thorac Oncol, 4, 5, 10.1097/JTO.0b013e3181913e0e · DOI
  11. Weiss, 2010, Frequent and focal FGFR1 amplification associates with therapeutically tractable FGFR1 dependency in squamous cell lung cancer, Sci Transl Med, 2, 62ra93, 10.1126/scitranslmed.3001451 · DOI
  12. Yamamoto, 2008, PIK3CA mutations and copy number gains in human lung cancers, Cancer Res, 68, 6913, 10.1158/0008-5472.CAN-07-5084 · DOI
  13. Lockwood, 2012, Divergent genomic and epigenomic landscapes of lung cancer subtypes underscore the selection of different oncogenic pathways during tumor development, PLoS One, 7, e37775, 10.1371/journal.pone.0037775 · DOI
  14. Gazdar, 2010, Lung cancer cell lines as tools for biomedical discovery and research, J Natl Cancer Inst, 102, 1310, 10.1093/jnci/djq279 · DOI
  15. Ishkanian, 2004, A tiling resolution DNA microarray with complete coverage of the human genome, Nat Genet, 36, 299, 10.1038/ng1307 · DOI
  16. Khojasteh, 2005, A stepwise framework for the normalization of array CGH data, BMC Bioinform, 6, 274, 10.1186/1471-2105-6-274 · DOI
  17. Jong, 2004, Breakpoint identification and smoothing of array comparative genomic hybridization data, Bioinformatics, 20, 3636, 10.1093/bioinformatics/bth355 · DOI
  18. Beroukhim, 2007, Assessing the significance of chromosomal aberrations in cancer: methodology and application to glioma, Proc Natl Acad Sci U S A, 104, 20007, 10.1073/pnas.0710052104 · DOI
  19. Irizarry, 2003, Exploration, normalization, and summaries of high density oligonucleotide array probe level data, Biostatistics, 4, 249, 10.1093/biostatistics/4.2.249 · DOI · Paper page
  20. Lockwood, 2010, Integrative genomic analyses identify BRF2 as a novel lineage-specific oncogene in lung squamous cell carcinoma, PLoS Med, 7, e1000315, 10.1371/journal.pmed.1000315 · DOI · Paper page
  21. Lockwood, 2012, Integrative genomics identified RFC3 as an amplified candidate oncogene in esophageal adenocarcinoma, Clin Cancer Res, 18, 1936, 10.1158/1078-0432.CCR-11-1431 · DOI
  22. Thu, 2011, Genetic disruption of KEAP1/CUL3 E3 ubiquitin ligase complex components is a key mechanism of NF-κB pathway activation in lung cancer, J Thorac Oncol, 6, 1521, 10.1097/JTO.0b013e3182289479 · DOI
  23. Coe, 2010, FACADE: a fast and sensitive algorithm for the segmentation and calling of high resolution array CGH data, Nucleic Acids Res, 38, e157, 10.1093/nar/gkq548 · DOI · Paper page
  24. Chari, 2010, A sequence-based approach to identify reference genes for gene expression analysis, BMC Med Genom, 3, 32, 10.1186/1755-8794-3-32 · DOI
  25. Zhao, 2005, Homozygous deletions and chromosome amplifications in human lung carcinomas revealed by single nucleotide polymorphism array analysis, Cancer Res, 65, 5561, 10.1158/0008-5472.CAN-04-4603 · DOI
  26. Job, 2010, Genomic aberrations in lung adenocarcinoma in never smokers, PLoS One, 5, e15145, 10.1371/journal.pone.0015145 · DOI
  27. Herbst, 2008, Lung cancer, N Engl J Med, 359, 1367, 10.1056/NEJMra0802714 · DOI
  28. Fischer, 1997, Cloning of a novel transcription factor-like gene amplified in human glioma including astrocytoma grade I, Hum Mol Genet, 6, 1817, 10.1093/hmg/6.11.1817 · DOI
  29. Munnia, 2001, Expression, cellular distribution and protein binding of the glioma amplified sequence (GAS41), a highly conserved putative transcription factor, Oncogene, 20, 4853, 10.1038/sj.onc.1204650 · DOI
  30. Barretina, 2010, Subtype-specific genomic alterations define new targets for soft-tissue sarcoma therapy, Nat Genet, 42, 715, 10.1038/ng.619 · DOI · Paper page
  31. Shedden, 2008, Gene expression-based survival prediction in lung adenocarcinoma: a multi-site, blinded validation study, Nat Med, 14, 822, 10.1038/nm.1790 · DOI
  32. Park, 2006, GAS41 is required for repression of the p53 tumor suppressor pathway during normal cellular proliferation, Mol Cell Biol, 26, 4006, 10.1128/MCB.02185-05 · DOI
  33. Medjkane, 2009, Myocardin-related transcription factors and SRF are required for cytoskeletal dynamics and experimental metastasis, Nat Cell Biol, 11, 257, 10.1038/ncb1833 · DOI
  34. Prencipe, 2013, Identification of transcription factors associated with castration-resistance: is the serum responsive factor a potential therapeutic target?, Prostate, 73, 743, 10.1002/pros.22618 · DOI
  35. Chari, 2010, Integrating the multiple dimensions of genomic and epigenomic landscapes of cancer, Cancer Metastasis Rev, 29, 73, 10.1007/s10555-010-9199-2 · DOI
  36. Zimmermann, 2002, Targeted disruption of the GAS41 gene encoding a putative transcription factor indicates that GAS41 is essential for cell viability, J Biol Chem, 277, 18626, 10.1074/jbc.M200572200 · DOI
  37. Schulze, 2009, YEATS domain proteins: a diverse family with many links to chromatin modification and transcription, Biochem Cell Biol, 87, 65, 10.1139/O08-111 · DOI
  38. Cai, 2005, The mammalian YL1 protein is a shared subunit of the TRRAP/TIP60 histone acetyltransferase and SRCAP complexes, J Biol Chem, 280, 13665, 10.1074/jbc.M500001200 · DOI
  39. Doyon, 2004, Structural and functional conservation of the NuA4 histone acetyltransferase complex from yeast to humans, Mol Cell Biol, 24, 1884, 10.1128/MCB.24.5.1884-1896.2004 · DOI · Paper page
  40. Piccinni, 2011, Direct interaction of Gas41 and Myc encoded by amplified genes in nervous system tumours, Acta Biochim Pol, 58, 529, 10.18388/abp.2011_2220 · DOI
  41. Lauffart, 2002, Interaction of the transforming acidic coiled-coil 1 (TACC1) protein with ch-TOG and GAS41/NuBI1 suggests multiple TACC1-containing protein complexes in human cells, Biochem J, 363, 195, 10.1042/bj3630195 · DOI
  42. Harborth, 2000, GAS41, a highly conserved protein in eukaryotic nuclei, binds to NuMA, J Biol Chem, 275, 31979, 10.1074/jbc.M000994200 · DOI
  43. Debernardi, 2002, The MLL fusion partner AF10 binds GAS41, a protein that interacts with the human SWI/SNF complex, Blood, 99, 275, 10.1182/blood.V99.1.275 · DOI
  44. Schmitt, 2012, GAS41 amplification results in overexpression of a new spindle pole protein, Genes Chromosomes Cancer, 51, 868, 10.1002/gcc.21971 · DOI
  45. Marine, 2010, Mdm2-mediated ubiquitylation: p53 and beyond, Cell Death Differ, 17, 93, 10.1038/cdd.2009.68 · DOI · Paper page
  46. Manfredi, 2010, The Mdm2-p53 relationship evolves: Mdm2 swings both ways as an oncogene and a tumor suppressor, Genes Dev, 24, 1580, 10.1101/gad.1941710 · DOI · Paper page
  47. Momand, 1998, The MDM2 gene amplification database, Nucleic Acids Res, 26, 3453, 10.1093/nar/26.15.3453 · DOI · Paper page

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Metadata

Authors
Pikor, L. A., Lockwood, W. W., Thu, K. L., Vucic, E. A., Chari, R., Gazdar, A. F., Lam, S., & Lam, W. L.
Affiliations
Authors' Affiliations: 1Integrative Oncology, BC Cancer Research Center, Vancouver, BC, Canada; 2National Institutes of Health, Bethesda, Maryland; 3Department of Genetics, Harvard Medical School, Boston, Massachusetts; and 4Hamon Center of Therapeutics, University of Texas South Western, Dallas, Texas
Venue
Cancer Research
Published
2013-12-15
Volume
73
Issue
24
Pages
7301-7312
ISSN
  • 0008-5472
  • 1538-7445
Cited by
44
References
2
Language
en

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