Cited by 196RNA Interference and Gene DeliveryVirus-based gene therapy researchCRISPR and Genetic Engineering

Argonaute proteins are key determinants of RNAi efficacy, toxicity, and persistence in the adult mouse liver

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Grimm, Dirk, Wang, Lora, Lee, Joyce S., Schürmann, Nina, Gu, Shuo, Börner, Kathleen, Storm, Theresa A., Kay, Mark A.·2010·Journal of Clinical Investigation

Abstract

shRNA overexpression from viral gene therapy vectors can trigger cytotoxicity leading to organ failure and lethality in mice and rats. This process likely involves saturation of endogenous cellular RNAi factors including exportin-5 (Xpo-5). Here, we have shown that Xpo-5 overexpression enhanced shRNA efficiency in the liver of adult mice but increased hepatotoxicity. We identified the 4 members of the human Argonaute (Ago) protein family as downstream factors involved in saturation of endogenous cellular RNAi, all of which were able to interact with shRNAs in cells and mice. In Ago/shRNA coexpression studies, Ago-2 (Slicer) was the primary rate-limiting determinant of both in vitro and in vivo RNAi efficacy, toxicity, and persistence. In adult mice, vector-based Ago-2/Xpo-5 coexpression enhanced U6-driven shRNA silencing of exogenous and endogenous hepatic targets, reduced hepatotoxicity, and extended RNAi stability by more than 3 months. Use of weaker RNA polymerase III promoters to minimize shRNA expression likewise alleviated in vivo toxicity and permitted greater than 95% persistent knockdown of hepatitis B virus and other transgenes in mouse liver for more than 1 year. Our studies substantiate that abundant small RNAs can overload the endogenous RNAi pathway and reveal possible strategies for reducing hepatotoxicity of short- and long-term clinical gene silencing in humans.

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  • Factors beyond transcriptional competition, such as saturation of RISC or altered miRNA stability, may contribute to the observed differences in efficacy.

    “This suggests that factors beyond transcriptional competition-such as saturation of the RNA-induced silencing complex (RISC) or altered miRNA stability-may contribute to the observed differences in efficacy 46 .”

    From rAAV-mediated Multi-miRNA Delivery Targeting MAPK Pathway Suppresses Laser-induced Choroidal Neovascularization in Mice (2026) · cites this paper as [46]

    The section “Ago-2 saturation depends on trigger-target sequence homologies” reports Ago-2/RISC saturation and says it occurs at varying efficacies, supporting RISC saturation as a possible contributor to efficacy differences. The Discussion mentions long miRNA half-lives and effects on miRNA biogenesis and maturation, but does not establish that altered miRNA stability contributes to those differences. No page numbers are available in our copy. (LLM, conf=0.83)

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Research works printed but not linked: 66

  1. Fire A, Xu S, Montgomery MK, Kostas SA, Driver SE, Mello CC. Potent and specific genetic interfer- ence by double-stranded RNA in Caenorhabditis elegans. Nature. 1998;391(6669):806-811.
  2. Castanotto D, Rossi JJ. The promises and pitfalls of RNA-interference-based therapeutics. Nature. 2009;457(7228):426-433.
  3. Grimm D, et al. Fatality in mice due to oversatu- ration of cellular microRNA/short hairpin RNA pathways. Nature. 2006;441(7092):537-541.
  4. Beer S, et al. Low-level shRNA cytotoxicity can con- tribute to MYC-induced hepatocellular carcinoma in adult mice. Mol Ther. 2010;18(1):161-170.
  5. McBride JL, et al. Artificial miRNAs mitigate shRNA-mediated toxicity in the brain: implications for the therapeutic development of RNAi. Proc Natl Acad Sci U S A. 2008;105(15):5868-5873.
  6. Boudreau RL, Martins I, Davidson BL. Artificial microRNAs as siRNA shuttles: improved safety as compared to shRNAs in vitro and in vivo. Mol Ther. 2009;17(1):169-175.
  7. Ehlert EM, Eggers R, Niclou SP, Verhaagen J. Cellu- lar toxicity following application of adeno-associ- ated viral vector-mediated RNA interference in the nervous system. BMC Neurosci. 2010;11:20.
  8. Giering JC, Grimm D, Storm TA, Kay MA. Expres- sion of shRNA from a tissue-specific pol II pro- moter is an effective and safe RNAi therapeutic. Mol Ther. 2008;16(9):1630-1636.
  9. An DS, et al. Optimization and functional effects of stable short hairpin RNA expression in primary human lymphocytes via lentiviral vectors. Mol Ther. 2006;14(4):494-504.
  10. Gasior SL, Palmisano M, Deininger PL. Alu-linked hairpins efficiently mediate RNA interference with less toxicity than do H1-expressed short hairpin RNAs. Anal Biochem. 2006;349(1):41-48.
  11. Cao W, Hunter R, Strnatka D, McQueen CA, Erickson RP. DNA constructs designed to produce short hairpin, interfering RNAs in transgenic mice sometimes show early lethality and an interferon response. J Appl Genet. 2005;46(2):217-225.
  12. Castanotto D, et al. Combinatorial delivery of small interfering RNAs reduces RNAi efficacy by selective incorporation into RISC. Nucleic Acids Res. 2007;35(15):5154-5164.
  13. Vickers TA, Lima WF, Nichols JG, Crooke ST. Reduced levels of Ago2 expression result in increased siRNA competition in mammalian cells. Nucleic Acids Res. 2007;35(19):6598-6610.
  14. Koller E, et al. Competition for RISC binding pre- dicts in vitro potency of siRNA. Nucleic Acids Res. 2006;34(16):4467-4476.
  15. Khan AA, Betel D, Miller ML, Sander C, Leslie CS, Marks DS. Transfection of small RNAs glob- ally perturbs gene regulation by endogenous micro- RNAs. Nat Biotechnol. 2009;27(6):549-555.
  16. Chendrimada TP, et al. TRBP recruits the Dicer complex to Ago2 for microRNA processing and gene silencing. Nature. 2005;436(7051):740-744.
  17. Doi N, Zenno S, Ueda R, Ohki-Hamazaki H, Ui- Tei K, Saigo K. Short-interfering-RNA-mediated gene silencing in mammalian cells requires Dicer and eIF2C translation initiation factors. Curr Biol. 2003;13(1):41-46.
  18. Holen T, Amarzguioui M, Wiiger MT, Babaie E, Prydz H. Positional effects of short interfering RNAs targeting the human coagulation trigger Tis- sue Factor. Nucleic Acids Res. 2002;30(8):1757-1766.
  19. Boudreau RL, Monteys AM, Davidson BL. Mini- mizing variables among hairpin-based RNAi vec- tors reveals the potency of shRNAs. RNA. 2008; 14(9):1834-1844.
  20. Diederichs S, Jung S, Rothenberg SM, Smolen GA, Mlody BG, Haber DA. Coexpression of Argo- naute-2 enhances RNA interference toward perfect match binding sites. Proc Natl Acad Sci U S A. 2008; 105(27):9284-9289.
  21. Liu J, et al. Argonaute2 is the catalytic engine of mam- malian RNAi. Science. 2004;305(5689):1437-1441.
  22. Meister G, Landthaler M, Patkaniowska A, Dorsett Y, Teng G, Tuschl T. Human Argonaute2 mediates RNA cleavage targeted by miRNAs and siRNAs. Mol Cell. 2004;15(2):185-197.
  23. Yi R, Doehle BP, Qin Y, Macara IG, Cullen BR. Over- expression of exportin 5 enhances RNA interference mediated by short hairpin RNAs and microRNAs. RNA. 2005;11(2):220-226.
  24. Yi R, Qin Y, Macara IG, Cullen BR. Exportin-5 medi- ates the nuclear export of pre-microRNAs and short hairpin RNAs. Genes Dev. 2003;17(24):3011-3016.
  25. Castanotto D, Lingeman R, Riggs AD, Rossi JJ. CRM1 mediates nuclear-cytoplasmic shuttling of mature microRNAs. Proc Natl Acad Sci U S A. 2009; 106(51):21655-21659.
  26. Ohrt T, Merkle D, Birkenfeld K, Echeverri CJ, Schwille P. In situ fluorescence analysis demon- strates active siRNA exclusion from the nucleus by Exportin 5. Nucleic Acids Res. 2006;34(5):1369-1380.
  27. Haussecker D, Huang Y, Lau A, Parameswaran P, Fire AZ, Kay MA. Human tRNA-derived small RNAs in the global regulation of RNA silencing. RNA. 2010;16(4):673-695.
  28. Su H, Trombly MI, Chen J, Wang X. Essential and overlapping functions for mammalian Argonautes in microRNA silencing. Genes Dev. 2009;23(3):304-317.
  29. Wu L, Fan J, Belasco JG. Importance of translation and nonnucleolytic ago proteins for on-target RNA interference. Curr Biol. 2008;18(17):1327-1332.
  30. Hock J, et al. Proteomic and functional analysis of Argonaute-containing mRNA-protein complexes in human cells. EMBO Rep. 2007;8(11):1052-1060.
  31. Schmitter D, et al. Effects of Dicer and Argonaute down-regulation on mRNA levels in human HEK293 cells. Nucleic Acids Res. 2006;34(17):4801-4815.
  32. Morris KV, Santoso S, Turner AM, Pastori C, Hawkins PG. Bidirectional transcription directs both transcriptional gene activation and suppression in human cells. PLoS Genet. 2008;4(11):e1000258.
  33. Peters L, Meister G. Argonaute proteins: mediators of RNA silencing. Mol Cell. 2007;26(5):611-623.
  34. Cheloufi S, Dos Santos CO, Chong MM, Han- non GJ. A dicer-independent miRNA biogen- esis pathway that requires Ago catalysis. Nature. 2010;465(7298):584-589.
  35. Sandberg R, Neilson JR, Sarma A, Sharp PA, Burge CB. Proliferating cells express mRNAs with short- ened 3′ untranslated regions and fewer microRNA target sites. Science. 2008;320(5883):1643-1647.
  36. Gu S, Jin L, Zhang F, Sarnow P, Kay MA. Biological basis for restriction of microRNA targets to the 3′ untranslated region in mammalian mRNAs. Nat Struct Mol Biol. 2009;16(2):144-150.
  37. Kim DH, Rossi JJ. Strategies for silencing human disease using RNA interference. Nat Rev Genet. 2007; 8(3):173-184.
  38. Diederichs S, Haber DA. Dual role for argonautes in microRNA processing and posttranscriptional regulation of microRNA expression. Cell. 2007; 131(6):1097-1108.
  39. O'Carroll D, et al. A Slicer-independent role for Argonaute 2 in hematopoiesis and the microRNA pathway. Genes Dev. 2007;21(16):1999-2004.
  40. Kaneda M, Tang F, O'Carroll D, Lao K, Surani MA. Essential role for Argonaute2 protein in mouse oogenesis. Epigenetics Chromatin. 2009;2(1):9.
  41. Janowski BA, et al. Involvement of AGO1 and AGO2 in mammalian transcriptional silencing. Nat Struct Mol Biol. 2006;13(9):787-792.
  42. Kim DH, Saetrom P, Snove O Jr, Rossi JJ. Micro- RNA-directed transcriptional gene silencing in mammalian cells. Proc Natl Acad Sci U S A. 2008; 105(42):16230-16235.
  43. Watanabe T, et al. Endogenous siRNAs from natu- rally formed dsRNAs regulate transcripts in mouse oocytes. Nature. 2008;453(7194):539-543.
  44. Morita S, Horii T, Kimura M, Goto Y, Ochiya T, Hatada I. One Argonaute family member, Eif2c2 (Ago2), is essential for development and appears not to be involved in DNA methylation. Genomics. 2007; 89(6):687-696.
  45. Gonzalez-Gonzalez E, Lopez-Casas PP, del Mazo J. The expression patterns of genes involved in the RNAi pathways are tissue-dependent and differ in the germ and somatic cells of mouse testis. Biochim Biophys Acta. 2008;1779(5):306-311.
  46. Sasaki T, Shiohama A, Minoshima S, Shimizu N. Iden- tification of eight members of the Argonaute family in the human genome. Genomics. 2003;82(3):323-330.
  47. Lu J, Qian J, Chen F, Tang X, Li C, Cardoso WV. Differential expression of components of the micro- RNA machinery during mouse organogenesis. Bio- chem Biophys Res Commun. 2005;334(2):319-323.
  48. Azuma-Mukai A, et al. Characterization of endog- enous human Argonautes and their miRNA part- ners in RNA silencing. Proc Natl Acad Sci U S A. 2008;105(23):7964-7969.
  49. Beitzinger M, Peters L, Zhu JY, Kremmer E, Meis- ter G. Identification of human microRNA targets from isolated argonaute protein complexes. RNA Biol. 2007;4(2):76-84.
  50. Landthaler M, et al. Molecular characterization of human Argonaute-containing ribonucleoprotein complexes and their bound target mRNAs. RNA. 2008; 14(12):2580-2596.
  51. Haussecker D, Cao D, Huang Y, Parameswaran P, Fire AZ, Kay MA. Capped small RNAs and MOV10 in human hepatitis delta virus replication. Nat Struct Mol Biol. 2008;15(7):714-721.
  52. Randall G, et al. Cellular cofactors affecting hepati- tis C virus infection and replication. Proc Natl Acad Sci U S A. 2007;104(31):12884-12889.
  53. Hand NJ, Master ZR, Le Lay J, Friedman JR. Hepat- ic function is preserved in the absence of mature microRNAs. Hepatology. 2009;49(2):618-626.
  54. Sekine S, et al. Disruption of Dicer1 induces dys- regulated fetal gene expression and promotes hepatocarcinogenesis. Gastroenterology. 2009; 136(7):2304-2315.
  55. Hayashi K, et al. MicroRNA biogenesis is required for mouse primordial germ cell development and spermatogenesis. PLoS One. 2008;3(3):e1738.
  56. Kanellopoulou C, et al. Dicer-deficient mouse embry- onic stem cells are defective in differentiation and cen- tromeric silencing. Genes Dev. 2005;19(4):489-501.
  57. Murchison EP, Partridge JF, Tam OH, Cheloufi S, Hannon GJ. Characterization of Dicer-deficient murine embryonic stem cells. Proc Natl Acad Sci U S A. 2005;102(34):12135-12140.
  58. Davis ME, et al. Evidence of RNAi in humans from systemically administered siRNA via targeted nanoparticles. Nature. 2010;464(7291):1067-1070.
  59. Grimm D, Kay MA. Combinatorial RNAi: a win- ning strategy for the race against evolving targets? Mol Ther. 2007;15(5):878-888.
  60. An DS, et al. Stable reduction of CCR5 by RNAi through hematopoietic stem cell transplant in non-human primates. Proc Natl Acad Sci U S A. 2007; 104(32):13110-13115.
  61. Grimm D, et al. In vitro and in vivo gene therapy vector evolution via multispecies interbreeding and retargeting of adeno-associated viruses. J Virol. 2008; 82(12):5887-5911.
  62. Zolotukhin S, Potter M, Hauswirth WW, Guy J, Muzyczka N. A "humanized" green fluorescent protein cDNA adapted for high-level expression in mammalian cells. J Virol. 1996;70(7):4646-4654.
  63. Liu J, Rivas FV, Wohlschlegel J, Yates JR 3rd, Parker R, Hannon GJ. A role for the P-body component GW182 in microRNA function. Nat Cell Biol. 2005; 7(12):1261-1266.
  64. Liu J, Valencia-Sanchez MA, Hannon GJ, Parker R. MicroRNA-dependent localization of targeted mRNAs to mammalian P-bodies. Nat Cell Biol. 2005; 7(7):719-723.
  65. Grimm D, Pandey K, Nakai H, Storm TA, Kay MA. Liver transduction with recombinant adeno-associ- ated virus is primarily restricted by capsid serotype not vector genotype. J Virol. 2006;80(1):426-439.
  66. Riu E, Grimm D, Huang Z, Kay MA. Increased maintenance and persistence of transgenes by exci- sion of expression cassettes from plasmid sequenc- es in vivo. Hum Gene Ther. 2005;16(5):558-570.

Cited by

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Authors
Grimm, D., Wang, L., Lee, J. S., Schürmann, N., Gu, S., Börner, K., Storm, T. A., & Kay, M. A.
Affiliations
  • Heidelberg University (DE)
  • Stanford Medicine (US)
Corresponding author
Kay, Mark A.
Venue
Journal of Clinical Investigation
Published
2010-09-01
Volume
120
Issue
9
Pages
3106-3119
ISSN
0021-9738 (ISSN-L)
OpenAlex
W2161582292
Cited by
196
References
2
Citations by year
2026: 2 · 2025: 3 · 2024: 9 · 2023: 4 · 2022: 5 · 2021: 8 · 2020: 8 · 2019: 9 · 2018: 6 · 2017: 11 · 2016: 13 · 2015: 18 · 2014: 22 · 2013: 26 · 2012: 22
FWCI
10.17
Type
journal article
Language
en
Open access
Locations
  • Journal of Clinical Investigation (publishedVersion)
  • PubMed Central (publishedVersion)
  • PubMed (publishedVersion)
Funders
  • Chica and Heinz Schaller Foundation
  • National Institutes of Health
  • National Institute of Allergy and Infectious Diseases (AI071068, R01AI071068)
Topics
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › RNA Interference and Gene Delivery
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Virus-based gene therapy research
  • Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › CRISPR and Genetic Engineering
Keywords
Argonaute proteins, RNA interference, shRNA, hepatotoxicity, XPO5, Argonaute 2, liver, hepatitis B virus, RNA polymerase III promoter, gene silencing, U6 promoter
MeSH terms
Animals, Female, Genetic Vectors, Hepatitis B virus, Liver, Mice, Transgenic, RNA Polymerase III, Eukaryotic Initiation Factor-2, Transgenes, Gene Silencing, Karyopherins, RNA Interference, Mice, Argonaute Proteins

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