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Uncovering the novel characteristics of Asian honey bee, Apis cerana, by whole genome sequencing
Open accessAbstract
BACKGROUND: The honey bee is an important model system for increasing understanding of molecular and neural mechanisms underlying social behaviors relevant to the agricultural industry and basic science. The western honey bee, Apis mellifera, has served as a model species, and its genome sequence has been published. In contrast, the genome of the Asian honey bee, Apis cerana, has not yet been sequenced. A. cerana has been raised in Asian countries for thousands of years and has brought considerable economic benefits to the apicultural industry. A cerana has divergent biological traits compared to A. mellifera and it has played a key role in maintaining biodiversity in eastern and southern Asia. Here we report the first whole genome sequence of A. cerana. RESULTS: Using de novo assembly methods, we produced a 238 Mbp draft of the A. cerana genome and generated 10,651 genes. A.cerana-specific genes were analyzed to better understand the novel characteristics of this honey bee species. Seventy-two percent of the A. cerana-specific genes had more than one GO term, and 1,696 enzymes were categorized into 125 pathways. Genes involved in chemoreception and immunity were carefully identified and compared to those from other sequenced insect models. These included 10 gustatory receptors, 119 odorant receptors, 10 ionotropic receptors, and 160 immune-related genes. CONCLUSIONS: This first report of the whole genome sequence of A. cerana provides resources for comparative sociogenomics, especially in the field of social insect communication. These important tools will contribute to a better understanding of the complex behaviors and natural biology of the Asian honey bee and to anticipate its future evolutionary trajectory.
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Cites
Basic local alignment search tool
Altschul, S. F., Gish, W., Miller, W., Myers, E. W., & Lipman, D. J. (1990) · Journal of Molecular Biology · doi:10.1006/jmbi.1990.9999 · Cited by 98,669
Gapped BLAST and PSI-BLAST: a new generation of protein database search programs
Altschul, S. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.17.3389 · Cited by 73,302
Gene Ontology: tool for the unification of biology
Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) · Nature Genetics · doi:10.1038/75556 · Cited by 43,206
Tamura, K., Peterson, D., Peterson, N., Stecher, G., Nei, M., & Kumar, S. (2011) · Molecular Biology and Evolution · doi:10.1093/molbev/msr121 · Cited by 39,969
KEGG: Kyoto Encyclopedia of Genes and Genomes
Kanehisa, M. (2000) · Nucleic Acids Research · doi:10.1093/nar/28.1.27 · Cited by 37,077
KEGG: Kyoto Encyclopedia of Genes and Genomes
Ogata, H., Goto, S., Sato, K., Fujibuchi, W., Bono, H., & Kanehisa, M. (1999) · Nucleic Acids Research · doi:10.1093/nar/27.1.29 · Cited by 31,232
Clustal W and Clustal X version 2.0
Larkin, M. A., Blackshields, G., Brown, N. P., Chenna, R., McGettigan, P. A., McWilliam, H., Valentin, F., Wallace, I. M., Wilm, A., Lopez, R., et al. (2007) · Bioinformatics · doi:10.1093/bioinformatics/btm404 · Cited by 28,358
RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome
Li, B., & Dewey, C. N. (2011) · BMC Bioinformatics · doi:10.1186/1471-2105-12-323 · Cited by 22,179
The Pfam Protein Families Database
Bateman, A. (2002) · Nucleic Acids Research · doi:10.1093/nar/30.1.276 · Cited by 14,000
Trapnell, C., Roberts, A., Goff, L., Pertea, G., Kim, D., Kelley, D. R., Pimentel, H., Salzberg, S. L., Rinn, J. L., & Pachter, L. (2012) · Nature Protocols · doi:10.1038/nprot.2012.016 · Cited by 12,116
Research works printed but not linked: 25
- Oldroyd BP, Wongsiri S: Asian Honey Bees : Biology, Conservation, and Human Interactions. Cambridge, Mass: Harvard University Press; 2006. · doi:10.4159/9780674041622
- Engel MS: A monography of the Baltic amber bees and evolution of the Apoidea (Hymenoptera).Bull Am Mus Nat Hist 2001, 259:5–192. · doi:10.1206/0003-0090(2001)259
- Xu P, Shi M, Chen XX: Antimicrobial peptide evolution in the Asiatic honey beeApis cerana.Plos one 2009, 4:e4239. 10.1371/journal.pone.0004239 · doi:10.1371/journal.pone.0004239
- YS Peng YF, Xu S, Ge S: The resistance mechanism of the Asian honey Bee,apis ceranafabr., to an ectoparasitic mite,varroa jacobsonioudemans.J Invertebr Pathol 1987, 49:54–60. 10.1016/0022-2011(87)90125-X · doi:10.1016/0022-2011(87)90125-x
- Ono M, Okada I, Sasaki M: Heat protection by balling in the japanese honeybeeApis cerana japonicaas a defensive behavior against the hornet,Vespa simillima xanthoptera(Hymenoptera: Vespidae).Experientia 1987, 43:1031–1032. 10.1007/BF01952231 · doi:10.1007/bf01952231
- Morse RA, Shearer DA, Bosh SR, Benton AW: Observation on alarm substances in the genusApis.J Api Res 1967, 6:113–118. · doi:10.1080/00218839.1967.11100168
- Ono M, Garashi T, Ohno E, Sasaki M: Unusual thermal defence by a honeybee against mass attack by hornets.Nature 1995, 377:334–336. 10.1038/377334a0 · doi:10.1038/377334a0
- Seeley TD, Seeley RH: Colony defense strategies of the honeybee in Thailand.Ecol Monogr 1982, 52:43–63. 10.2307/2937344 · doi:10.2307/2937344
- Seeley TD, Morse RA: Dispersal behavior of honey Bee swarms.Psyche 1977, 84:199–209. 10.1155/1977/37918 · doi:10.1155/1977/37918
- Hadisoesilo S, Otis G: Differences in drone cappings ofApis ceranaandApis nigrocincta.J Apic Res 1998, 37:11–15. · doi:10.1080/00218839.1998.11100948
- Atwal AS, Dhaliwal GS: Some behavioural characteristics ofApis indicaF andApis melliferaL.Indian Bee J 1969, 31:83–90.
- Koetz AH: Ecology, behaviour and control ofapis ceranawith a focus on relevance to the Australian incursion.Insects 2013, 4:558–592. 10.3390/insects4040558 · doi:10.3390/insects4040558
- Li JKFM, Zhang L, Zhang ZH, Pan YH: Proteomics analysis of major royal jelly protein changes under different storage conditions.J Proteome Res 2008, 7:3339–3353. 10.1021/pr8002276 · doi:10.1021/pr8002276
- Miyamoto S: Biological studies on Japanese Bees. X Defferences in flower relationship between a Japanese and a European honeybee.Sci Rep Hyogo Univ Agric Ser agric Biol 1958, 3:99–101.
- Hongxia Ai XY, Richou H: Occurrence and prevalence of seven bee viruses inApis melliferaandApis ceranaapiaries in China.J Invertebr Pathol 2012, 109:160–164. 10.1016/j.jip.2011.10.006 · doi:10.1016/j.jip.2011.10.006
- Choe SE, Nguyen TT, Hyun BH, Noh JH, Lee HS, Lee CH, Kang SW: Genetic and phylogenetic analysis of South Korean sacbrood virus isolates from infected honey bees (Apis cerana).Vet Microbiol 2012, 157:32–40. 10.1016/j.vetmic.2011.12.007 · doi:10.1016/j.vetmic.2011.12.007
- Breed MD, Seth Perry P, Bjostad LB: Testing the blank slate hypothesis: why honey bee colonies accept young bees.Insect Sociaux 2004, 51:12–16. 10.1007/s00040-003-0698-9 · doi:10.1007/s00040-003-0698-9
- Stefanidou M, Athanaselis S, Koutselinis A: The toxicology of honey bee poisoning.Vet Hum Toxicol 2003, 45:261–265.
- Morel RKVMaL: NESTMATE RECOGNITION IN ANTS. 1998.
- Dani FR, Jones GR, Corsi S, Beard R, Pradella D, Turillazzi S: Nestmate recognition cues in the honey Bee: differential importance of cuticular alkanes and alkenes.Chem Senses 2005, 30:477–489. 10.1093/chemse/bji040 · doi:10.1093/chemse/bji040
- Châline N, Sandoz JC, Martin SJ, Ratnieks FL, Jones GR: Learning and discrimination of individual cuticular hydrocarbons by honeybees (apis mellifera).Chem Senses 2005, 30:327–335. 10.1093/chemse/bji027 · doi:10.1093/chemse/bji027
- Stange G: The response of the honeybee antennal CO 2 -receptors to N 2 O and Xe.J Comp Physiol 1973, 86:139–158. 10.1007/BF00702534 · doi:10.1007/bf00702534
- Evans JD, Spivak M: Socialized medicine: Individual and communal disease barriers in honey bees.J Invertebr Pathol 2010, 103:S62-S72. · doi:10.1016/j.jip.2009.06.019
- Yoo MS, Yoon BS: Incidence of honey bee disease in Korea 2009.Korean J Apic 2009, 24:273–278.
- Park D, Jung JW, Lee MO, Lee SY, Kim B, Jin HJ, Kim J, Ahn YJ, Lee KW, Song YS, Hong S, Womack JE, Kwon HW: Functional characterization of naturally occurring melittin peptide isoforms in two honey bee species,Apis melliferaandApis cerana.Peptides 2014, 53:185–193. · doi:10.1016/j.peptides.2014.01.026
Cited by
TSEBRA: transcript selector for BRAKER
Gabriel, L., Hoff, K. J., Brůna, T., Borodovsky, M., & Stanke, M. (2021) · BMC Bioinformatics · doi:10.1186/s12859-021-04482-0 · Cited by 410
EDGAR 2.0: an enhanced software platform for comparative gene content analyses
Blom, J., Kreis, J., Spänig, S., Juhre, T., Bertelli, C., Ernst, C., & Goesmann, A. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw255 · Cited by 369
PACVr: plastome assembly coverage visualization in R
Gruenstaeudl, M., & Jenke, N. (2020) · BMC Bioinformatics · doi:10.1186/s12859-020-3475-0 · Cited by 341
Scaffolding of long read assemblies using long range contact information
Ghurye, J., Pop, M., Koren, S., Bickhart, D., & Chin, C.-S. (2017) · BMC Genomics · doi:10.1186/s12864-017-3879-z · Cited by 304
Transposable elements are the primary source of novelty in primate gene regulation
Trizzino, M., Park, Y., Holsbach-Beltrame, M., Aracena, K., Mika, K., Caliskan, M., Perry, G. H., Lynch, V. J., & Brown, C. D. (2017) · Genome Research · doi:10.1101/gr.218149.116 · Cited by 285
Self-citation
Metadata
- Authors
- Park, D., Jung, J. W., Choi, B.-S., Jayakodi, M., Lee, J., Lim, J., Yu, Y., Choi, Y.-S., Lee, M.-L., Park, Y., Choi, I.-Y., Yang, T.-J., Edwards, O. R., Nah, G., & Kwon, H. W.
- Venue
- BMC Genomics
- Published
- 2015-01-02
- Volume
- 16
- Issue
- 1
- Pages
- 1-1
- ISSN
- 1471-2164 (ISSN-L)
- OpenAlex
- W1916919897
- Cited by
- 1,199
- References
- 93
- FWCI
- 77.71
- Type
- journal article
- Language
- en
- Open access
- gold
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