The RIN: an RNA integrity number for assigning integrity values to RNA measurements

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Spreading depolarization triggers pro- and anti-inflammatory signalling: a potential link to headache

Kaya, Ζ., Belder, N., Sever, M., Erdener, Ş. E., Dönmez‐Demir, B., Bağcı, C., Köroğlu, M. N., Bilgüvar, K., & Dalkara, T. (2025) · Brain · doi:10.1093/brain/awaf015 · Cited by 27

Brain expression quantitative trait locus mapping informs genetic studies of psychiatric diseases

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Temporal patterns of gene expression during calyx of held development

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Sox9 Functions as a Master Regulator of Antler Growth by Controlling Multiple Cell Lineages

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Transcriptomic profiling of Solanum peruvianum LA3858 revealed a Mi-3-mediated hypersensitive response to Meloidogyne incognita

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Transcriptomic analysis of temporal shifts in berry development between two grapevine cultivars of the Pinot family reveals potential genes controlling ripening time

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Genome-Wide miRNA Expression Profiling of Molecular Subgroups of Peripheral T-cell Lymphoma

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Identification of high-confidence human poly(A) RNA isoform scaffolds using nanopore sequencing

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Factorial design applied for multiple endpoint toxicity evaluation in Atlantic salmon (Salmo salar L.) hepatocytes

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Characterization of multidrug transporter-mediated efflux of avermectins in human and mouse neuroblastoma cell lines

Dalzell, A. M., Mistry, P., WRIGHT, J. A., Williams, F. M., & Brown, C. (2015) · Toxicology Letters · doi:10.1016/j.toxlet.2015.04.005 · Cited by 27

Influence of trypsinization and alternative procedures for cell preparation before RNA extraction on RNA integrity.

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Downregulation of TOMM40 expression in the blood of Alzheimer disease subjects compared with matched controls

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Inulin and probiotics in newly weaned piglets: effects on intestinal morphology, mRNA expression levels of inflammatory marker genes and haematology

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Transcriptional profiling of the parr–smolt transformation in Atlantic salmon

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Norepinephrine Reduces Reactive Oxygen Species (ROS) and DNA Damage in Ovarian Surface Epithelial Cells

Patel, P. (2015) · Journal of Bioanalysis & Biomedicine · doi:10.4172/1948-593x.1000127 · Cited by 26

Sample preservation, transport and processing strategies for honeybee RNA extraction: Influence on RNA yield, quality, target quantification and data normalization

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A complex network approach reveals a pivotal substructure of genes linked to schizophrenia

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Differential hippocampal gene expression and pathway analysis in an etiology‐based mouse model of major depressive disorder

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Dopamine transporter polymorphism modulates oculomotor function and DAT1 mRNA expression in schizophrenia

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Pre-treatment clinical and gene expression patterns predict developmental change in early intervention in autism

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home RNA: A Self-Sampling Kit for the Collection of Peripheral Blood and Stabilization of RNA

Haack, A. J., Lim, F. Y., Kennedy, D. S., Day, J. H., Adams, K. N., Lee, J. J., Berthier, E., & Theberge, A. B. (2021) · Analytical Chemistry · doi:10.1021/acs.analchem.1c02008 · Cited by 26

Mammary gene expressions and oxidative indicators in ruminal fluid, blood, milk, and mammary tissue of dairy goats fed a total mixed ration containing piper meal ( Piper betle L.)

Purba, R. A. P., Paengkoum, S., Yuangklang, C., Paengkoum, P., Salem, A. Z. M., & Liang, J. B. (2022) · Italian Journal of Animal Science · doi:10.1080/1828051x.2021.2007173 · Cited by 26

The Utility of Gene Expression in Blood Cells for Diagnosing Neuropsychiatric Disorders

Woelk, C. H., Singhania, A., Pérez‐Santiago, J., Glatt, S. J., & Tsuang, M. T. (2011) · International review of neurobiology · doi:10.1016/b978-0-12-387718-5.00003-1 · Cited by 26

Learning-induced gene expression in the heads of two Nasonia species that differ in long-term memory formation

Hoedjes, K. M., Smid, H. M., Schijlen, E. G. W. M., Vet, L. E. M., & van Vugt, J. J. F. A. (2015) · BMC Genomics · doi:10.1186/s12864-015-1355-1 · Cited by 27

Overlap Chronic Placental Inflammation Is Associated with a Unique Gene Expression Pattern

Raman, K., Wang, H., Troncone, M. J., Khan, W. I., Paré, G., & Terry, J. (2015) · PLoS ONE · doi:10.1371/journal.pone.0133738 · Cited by 26

Validation and Optimization of an Ex Vivo Assay of Intestinal Mucosal Biopsies in Crohn’s Disease: Reflects Inflammation and Drug Effects

Vadstrup, K., Galsgaard, E. D., Gerwien, J. G., Vester-Andersen, M. K., Pedersen, J. S., Rasmussen, J., Neermark, S., Kiszka‐Kanowitz, M., Jensen, T., & Bendtsen, F. (2016) · PLoS ONE · doi:10.1371/journal.pone.0155335 · Cited by 26

Imaging visceral leishmaniasis in real time with golden hamster model: Monitoring the parasite burden and hamster transcripts to further characterize the immunological responses of the host

Rouault, E., Lecoeur, H., Meriem, A. B., Minoprio, P. M. C., Goyard, S., & Lang, T. (2016) · Parasitology International · doi:10.1016/j.parint.2016.10.020 · Cited by 26

An Optimized Method for Extracting Bacterial RNA from Mouse Skin Tissue Colonized by Mycobacterium ulcerans

Robbe-Saule, M., Babonneau, J., Sismeiro, O., Marsollier, L., & Marion, E. (2017) · Frontiers in Microbiology · doi:10.3389/fmicb.2017.00512 · Cited by 26

Concordance analysis of microarray studies identifies representative gene expression changes in Parkinson’s disease: a comparison of 33 human and animal studies

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Induced expression of selected plant defence related genes in pot azalea, Rhododendron simsii hybrid

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Whole Transcriptome Analysis of Mesenchyme Tissue in Sika Deer Antler Revealed the CeRNAs Regulatory Network Associated With Antler Development

Han, R., Han, L., Wang, S., & Li, H. (2020) · Frontiers in Genetics · doi:10.3389/fgene.2019.01403 · Cited by 26

Egg transcriptome profile responds to maternal virus infection in honey bees, Apis mellifera

Amiri, E., Herman, J. J., Strand, M. K., Tarpy, D. R., & Rueppell, O. (2020) · Infection Genetics and Evolution · doi:10.1016/j.meegid.2020.104558 · Cited by 26

Transcriptome investigation of anti‐inflammation and immuno‐regulation mechanism of taurochenodeoxycholic acid

Bao, L., Hao, D., Wang, X., He, X., Mao, W., & Li, P. (2021) · BMC Pharmacology and Toxicology · doi:10.1186/s40360-021-00491-0 · Cited by 26

A Comprehensive Analysis of Northern versus Liquid Hybridization Assays for mRNAs, Small RNAs, and miRNAs Using a Non-Radiolabeled Approach

Ahmad, W., Gull, B., Baby, J., & Mustafa, F. (2021) · Current Issues in Molecular Biology · doi:10.3390/cimb43020036 · Cited by 26

Reproducible and sensitive micro-tissue RNA sequencing from formalin-fixed paraffin-embedded tissues for spatial gene expression analysis

Matsunaga, H., Arikawa, K., Yamazaki, M., Wagatsuma, R., Ide, K., Samuel, A. Z., Takamochi, K., Suzuki, K., Hayashi, T., Hosokawa, M., et al. (2022) · Scientific Reports · doi:10.1038/s41598-022-23651-6 · Cited by 30

Angiogenesis gene expression in murine endothelial cells during post-pneumonectomy lung growth

Lin, M., Chamoto, K., Gibney, B. C., Lee, G. S., Simpson, D. C., Houdek, J. P., Konerding, M. A., Tsuda, A., & Mentzer, S. J. (2011) · Respiratory Research · doi:10.1186/1465-9921-12-98 · Cited by 26

Expression levels of hnRNP G and hTra2‐beta1 correlate with opposite outcomes in endometrial cancer biology

Ouyang, Y. Q., Hausen, A. Z., Orlowska‐Volk, M., Jäger, M., Bettendorf, H., Hirschfeld, M., Tong, X. W., & Stickeler, E. (2010) · International Journal of Cancer · doi:10.1002/ijc.25544 · Cited by 26

A universal fixation method based on quaternary ammonium salts (RNAlater) for omics-technologies: Saccharomyces cerevisiae as a case study

van Eijsden, R. G. E., Stassen, C., Daenen, L., Mulders, S. E. V., Bapat, P. M., Siewers, V., Goossens, K. V. Y., Nielsen, J., Delvaux, F. R., Hummelen, P. V., et al. (2013) · Biotechnology Letters · doi:10.1007/s10529-013-1163-0 · Cited by 26

A 2.5-Kilobase Deletion Containing a Cluster of Nine MicroRNAs in the Latency-Associated-Transcript Locus of the Pseudorabies Virus Affects the Host Response of Porcine Trigeminal Ganglia during Established Latency

Mahjoub, N., Dhorne‐Pollet, S., Fuchs, W., Ahanda, M.-L. E., Lange, E., Klupp, B. G., Arya, A., Loveland, J. E., Lefèvre, F., Mettenleiter, T. C., et al. (2014) · Journal of Virology · doi:10.1128/jvi.02181-14 · Cited by 25

Acute toxicity of CCl4 but not of paracetamol induces a transcriptomic signature of fibrosis in precision-cut liver slices

Vatakuti, S., Schoonen, W. G. E. J., Elferink, M. G. L., Groothuis, G. M. M., & Olinga, P. (2015) · Toxicology in Vitro · doi:10.1016/j.tiv.2015.03.015 · Cited by 26

Impact of Preanalytical Handling and Timing for Peripheral Blood Mononuclear Cells Isolation and RNA Studies: The Experience of the Interinstitutional Multidisciplinary BioBank (BioBIM)

Palmirotta, R., Marchis, M. L. D., Ludovici, G., Leone, B., Savonarola, A., Ialongo, C., Spila, A., Angelis, F. D., Ferroni, P., Della‐Morte, D., et al. (2012) · The International Journal of Biological Markers · doi:10.5301/jbm.2012.9235 · Cited by 26

Global gene expression changes induced by prolonged cold ischemic stress and preservation method of breast cancer tissue

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Screening of a novel strong promoter by RNA sequencing and its application to H2 production in a hyperthermophilic archaeon

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Reference genes for normalising gene expression data in collagenase-induced rat intracerebral haemorrhage

Cook, N. L., Kleinig, T. J., van den Heuvel, C., & Vink, R. (2010) · BMC Molecular Biology · doi:10.1186/1471-2199-11-7 · Cited by 26

Terminal differentiation of goat mammary tissue during pregnancy requires the expression of genes involved in immune functions

Faucon, F., Rebours, E., Bevilacqua, C., Helbling, J., Aubert, J., Makhzami, S., Dhorne‐Pollet, S., Robin, S. S., & Martin, P. (2009) · Physiological Genomics · doi:10.1152/physiolgenomics.00032.2009 · Cited by 26

The dynamics of early-state transcriptional changes and aggregate formation in a Huntington’s disease cell model

van Hagen, M., Piebes, D. G. E., de Leeuw, W. C., Vuist, I. M., van Roon‐Mom, W., Moerland, P. D., & Verschure, P. J. (2017) · BMC Genomics · doi:10.1186/s12864-017-3745-z · Cited by 26

Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques

Tang, Y., Joyner, C. J., Cabrera-Mora, M., Saney, C. L., Lapp, S. A., Nural, M. V., Pakala, S., DeBarry, J. D., Soderberg, S. R., Kissinger, J. C., et al. (2017) · Malaria Journal · doi:10.1186/s12936-017-2029-z · Cited by 26

RNA integrity in post mortem human variant Creutzfeldt-Jakob disease (vCJD) and control brain tissue

Sherwood, K. R., Head, M. W., WALKER, R. E., Smith, C., Ironside, J. W., & Fazakerley, J. K. (2011) · Neuropathology and Applied Neurobiology · doi:10.1111/j.1365-2990.2011.01162.x · Cited by 26

The effect of calcium on the transcriptome of sporulating B. subtilis cells

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Exposure of Bacillus subtilis to Low Pressure (5 Kilopascals) Induces Several Global Regulons, Including Those Involved in the SigB-Mediated General Stress Response

Waters, S. M., Robles-Martínez, J. A., & Nicholson, W. L. (2014) · Applied and Environmental Microbiology · doi:10.1128/aem.00885-14 · Cited by 26

Comprehensive body fluid identification and contributor assignment by combining targeted sequencing of mRNA and coding region SNPs

Neis, M., Groß, T., Schneider, H., Schneider, P. M., & Courts, C. (2024) · Forensic Science International Genetics · doi:10.1016/j.fsigen.2024.103125 · Cited by 25

Deep Sequencing Whole Transcriptome Exploration of the σE Regulon in Neisseria meningitidis

Veld, R. H. I. ’., Willemsen, A. M., van Kampen, A. H. C., Bradley, E. J., Baas, F., Pannekoek, Y., & ENDE, A. V. D. (2011) · PLoS ONE · doi:10.1371/journal.pone.0029002 · Cited by 24

Extraction of Nucleic Acids from Yeast Cells and Plant Tissues using Ethanol as Medium for Sample Preservation and Cell Disruption

Linke, B., Schröder, K., Arter, J., Gasperazzo, T., Woehlecke, H., & EHWALD, R. (2010) · BioTechniques · doi:10.2144/000113476 · Cited by 25

Lymphovascular invasion and histologic grade are associated with specific genomic profiles in invasive carcinomas of the breast

Fidalgo, F., Rodrigues, T. C., Pinilla, M. G., Silva, A. G., Maciel, M. D. S., Rosenberg, C., de Andrade, V. P., Carraro, D. M., & Krepischi, A. C. V. (2014) · Tumor Biology · doi:10.1007/s13277-014-2786-z · Cited by 25

An Ultraconserved Element (UCE) controls homeostatic splicing of ARGLU1 mRNA

Pirnie, S. P., Osman, A., Zhu, Y., & Carmichael, G. (2016) · Nucleic Acids Research · doi:10.1093/nar/gkw1140 · Cited by 26

Biobanking of Fresh-Frozen Gastric Cancer Tissues: Impact of Long-Term Storage and Clinicopathological Variables on RNA Quality

Zhang, X., Han, Q.-Y., Zhao, Z.-S., Zhang, J., Zhou, W., & Lin, A. (2018) · Biopreservation and Biobanking · doi:10.1089/bio.2018.0038 · Cited by 25

MiR-711 and miR-183-3p as Potential Markers for Vital Reaction of Burned Skin

Zhang, K.-K., Cheng, M., Xu, J., Chen, L., Li, J.-H., Li, Q., Xie, X., & Wang, Q. (2020) · Forensic Sciences Research · doi:10.1080/20961790.2020.1719454 · Cited by 25

Advancing brain barriers RNA sequencing: guidelines from experimental design to publication

Francisco, D. M. F., Marchetti, L., Rodríguez‐Lorenzo, S., Frías-Anaya, E., de Figueiredo, R. M., BtRAIN Network, Heymans, M., Culot, M., Santa-Maria, A. R., Deli, M. A., et al. (2020) · Fluids and Barriers of the CNS · doi:10.1186/s12987-020-00207-2 · Cited by 24

Transcriptomic analysis of Burkholderia cenocepacia CEIB S5-2 during methyl parathion degradation

Ortiz-Hernández, M. L., Gama-Martínez, Y., Fernández‐López, M. G., Castrejón-Godínez, M. L., Encarnación‐Guevara, S., Tovar‐Sánchez, E., Salazar, E. P., Rodríguez, A., & Mussali-Galante, P. (2021) · Environmental Science and Pollution Research · doi:10.1007/s11356-021-13647-6 · Cited by 25

Transcriptome sequencing and lncRNA-miRNA-mRNA network construction in cardiac fibrosis and heart failure

Wang, S., Lv, T., Chen, Q., Yang, Y., Xu, L., Zhang, X., Wang, E., Hu, X., & Liu, Y. (2022) · Bioengineered · doi:10.1080/21655979.2022.2045839 · Cited by 25

Upregulation of APP, ADAM10 and ADAM17 in the Denervated Mouse Dentate Gyrus

Turco, D. D., Schlaudraff, J., Bonin, M., & Deller, T. (2014) · PLoS ONE · doi:10.1371/journal.pone.0084962 · Cited by 26

Effects of oral exposure to bisphenol A on gene expression and global genomic DNA methylation in the prostate, female mammary gland, and uterus of NCTR Sprague-Dawley rats

Camacho, L., Basavarajappa, M. S., Chang, C., Han, T., Kobets, T., Koturbash, I., Surratt, G., Lewis, S. M., Vanlandingham, M. M., Fuscoe, J. C., et al. (2015) · Food and Chemical Toxicology · doi:10.1016/j.fct.2015.04.009 · Cited by 26

The performance of KSC Fixation Tubes with RNALater for orbital experiments: A case study in ISS operations for molecular biology

Ferl, R. J., Żupańska, A. K., Spinale, A., Reed, D., Manning-Roach, S., Guerra, G., Cox, D. R., & Paul, A. (2011) · Advances in Space Research · doi:10.1016/j.asr.2011.03.002 · Cited by 25

Attenuated Monocyte Apoptosis, a New Mechanism for Osteoporosis Suggested by a Transcriptome-Wide Expression Study of Monocytes

Liu, Y., Zhou, Y. G., Zhang, L., Li, J., Tian, Q., Zhang, J., & Deng, H. (2015) · PLoS ONE · doi:10.1371/journal.pone.0116792 · Cited by 25

Sorting of Leishmania-bearing dendritic cells reveals subtle parasite-induced modulation of host-cell gene expression

Lecoeur, H., Giraud, É., y Fortéa, J. O., Goyard, S., Kiefer‐Biasizzo, H., Balazuc, A., Milon, G., Prina, E., & Lang, T. (2009) · Microbes and Infection · doi:10.1016/j.micinf.2009.09.014 · Cited by 25

Expression of complement and toll-like receptor pathway genes is associated with malaria severity in Mali: a pilot case control study

Sobota, R. S., Dara, A., Manning, J. E., Niangaly, A., Bailey, J. A., Kone, A. K., Thera, M. A., DJIMDÉ, A. A., Vernet, G., Leissner, P., et al. (2016) · Malaria Journal · doi:10.1186/s12936-016-1189-6 · Cited by 25

Effects of Transport and Storage Conditions on Gene Expression in Blood Samples

Malentacchi, F., Pizzamiglio, S., Wyrich, R., Verderio, P., Ciniselli, C. M., Pazzagli, M., & Gelmini, S. (2016) · Biopreservation and Biobanking · doi:10.1089/bio.2015.0037 · Cited by 25

Biobanking of Fresh-Frozen Human Adenocarcinomatous and Normal Colon Tissues: Which Parameters Influence RNA Quality?

Galissier, T., Schneider, C., Nasri, S., Kanagaratnam, L., Fichel, C., Coquelet, C., Diébold, M.-D., Kianmanesh, R., Bellon, G., Dedieu, S., et al. (2016) · PLoS ONE · doi:10.1371/journal.pone.0154326 · Cited by 25

Ewing’s Sarcoma: An Analysis of miRNA Expression Profiles and Target Genes in Paraffin-Embedded Primary Tumor Tissue

Parafioriti, A., Bason, C., Armiraglio, E., Calciano, L., Daolio, P. A., Berardocco, M., Bernardo, A. D., Colosimo, A., Luksch, R., & Berardi, A. C. (2016) · International Journal of Molecular Sciences · doi:10.3390/ijms17050656 · Cited by 27

Differential gene expression in porcine oviduct during the oestrous cycle

Acuña, O. S., Avilés, M., López, R. G., Guillén-Martínez, A., Soriano‐Úbeda, C., Torrecillas, A., Coy, P., & Izquierdo-Rico, M. J. (2017) · Reproduction Fertility and Development · doi:10.1071/rd16457 · Cited by 25

Digital-PCR for gene expression: impact from inherent tissue RNA degradation

Millier, M. J., Stamp, L. K., & Hessian, P. A. (2017) · Scientific Reports · doi:10.1038/s41598-017-17619-0 · Cited by 25

The microbiota of hematophagous ectoparasites collected from migratory birds

Cerutti, F., Modesto, P., Rizzo, F., Cravero, A., Jurman, I., Costa, S., Giammarino, M., Mandola, M. L., Goria, M., Radović, S., et al. (2018) · PLoS ONE · doi:10.1371/journal.pone.0202270 · Cited by 25

Suicide and suicide behaviors: A review of transcriptomics and multiomics studies in psychiatric disorders

Zhou, Y., Lutz, P.-É., Ibrahim, E. C., Courtet, P., Tzavara, E. T., Turecki, G., & Belzeaux-R, R. (2018) · Journal of Neuroscience Research · doi:10.1002/jnr.24367 · Cited by 29

Identification of Stress Associated microRNAs in Solanum lycopersicum by High-Throughput Sequencing

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