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The nasal cavity microbiota of healthy adults
Open accessAbstract
BACKGROUND: The microbiota of the nares has been widely studied. However, relatively few studies have investigated the microbiota of the nasal cavity posterior to the nares. This distinct environment has the potential to contain a distinct microbiota and play an important role in health. RESULTS: We obtained 35,142 high-quality bacterial 16S rRNA-encoding gene sequence reads from the nasal cavity and oral cavity (the dorsum of the tongue and the buccal mucosa) of 12 healthy adult humans and deposited these data in the Sequence Read Archive (SRA) of the National Center for Biotechnology Information (NCBI) (Bioproject: PRJNA248297). In our initial analysis, we compared the bacterial communities of the nasal cavity and the oral cavity from ten of these subjects. The nasal cavity bacterial communities were dominated by Actinobacteria, Firmicutes, and Proteobacteria and were statistically distinct from those on the tongue and buccal mucosa. For example, the same Staphylococcaceae operational taxonomic unit (OTU) was present in all of the nasal cavity samples, comprising up to 55% of the community, but Staphylococcaceae was comparatively uncommon in the oral cavity. CONCLUSIONS: There are clear differences between nasal cavity microbiota and oral cavity microbiota in healthy adults. This study expands our knowledge of the nasal cavity microbiota and the relationship between the microbiota of the nasal and oral cavities.
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“In healthy adults, bacteria present in the nasal cavity are typically those associated with skin, predominantly members of the Actinobacteria (e.g., Corynebacterium spp., Propionibacterium spp.), followed by Firmicutes (e.g., Staphylococcus spp.), and Proteobacteria”
From Respiratory viral infection-induced microbiome alterations and secondary bacterial pneumonia. (2018) · cites this paper as [69]
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Cites
The SILVA ribosomal RNA gene database project: improved data processing and web-based tools
Quast, C., Pruesse, E., Yilmaz, P., Gerken, J., Schweer, T., Yarza, P., Peplies, J., & Glöckner, F. O. (2012) · Nucleic Acids Research · doi:10.1093/nar/gks1219 · Cited by 33,055 · cited 1×
“The sequences were aligned to the Silva reference alignment [17,18].”
MethodSchloss, P. D., Westcott, S. L., Ryabin, T., Hall, J. R., Hartmann, M., Hollister, E. B., Lesniewski, R. A., Oakley, B. B., Parks, D. H., Robinson, C. J., et al. (2009) · Applied and Environmental Microbiology · doi:10.1128/aem.01541-09 · Cited by 19,549 · cited 1×
“0 according to the Schloss SOP of November 27, 2012 [15,16].”
MethodUCHIME improves sensitivity and speed of chimera detection
Edgar, R. C., Haas, B. J., Clemente, J. C., Quince, C., & Knight, R. (2011) · Bioinformatics · doi:10.1093/bioinformatics/btr381 · Cited by 15,114
A new method for non-parametric multivariate analysis of variance
Anderson, M. J. (2001) · Austral Ecology · doi:10.1111/j.1442-9993.2001.01070.pp.x · Cited by 13,828 · cited 4×
“Principle coordinates analysis (PCoA) was used to visualize the θ distance matrix, and analysis of molecular variance (AMOVA) [22] was used to test the statistical significance of the differences between bacterial communities of different groups (i.e., nasal cavity communities versus buccal mucosa communities).”
MethodInfluentialStructure, function and diversity of the healthy human microbiome
The Human Microbiome Project Consortium (2012) · Nature · doi:10.1038/nature11234 · Cited by 11,726
Bacterial Community Variation in Human Body Habitats Across Space and Time
Costello, E. K., Lauber, C. L., Hamady, M., Fierer, N., Gordon, J. I., & Knight, R. (2009) · Science · doi:10.1126/science.1177486 · Cited by 3,231 · cited 1×
“However, many studies have characterized the microbiota of the healthy human nares [6-11], which are adjacent and anterior to the nasal cavity.”
BackgroundTopographical and Temporal Diversity of the Human Skin Microbiome
Grice, E. A., Kong, H. H., Conlan, S., Deming, C. B., Davis, J., Young, A. C., Program, N. C. S., Bouffard, G. G., Blakesley, R. W., Murray, P. R., et al. (2009) · Science · doi:10.1126/science.1171700 · Cited by 2,953 · cited 1×
“However, many studies have characterized the microbiota of the healthy human nares [6-11], which are adjacent and anterior to the nasal cavity.”
BackgroundThe role of the gut microbiota in nutrition and health
Flint, H. J., Scott, K. P., Louis, P., & Duncan, S. H. (2012) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2012.156 · Cited by 2,283
Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies
Schloss, P. D., Gevers, D., & Westcott, S. L. (2011) · PLoS ONE · doi:10.1371/journal.pone.0027310 · Cited by 2,112 · cited 1×
“0 according to the Schloss SOP of November 27, 2012 [15,16].”
MethodSorokin, S. P. (1983) · doi:10.1007/978-1-349-06859-3_23 · Cited by 1,783
The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis
Cole, J. R. (2004) · Nucleic Acids Research · doi:10.1093/nar/gki038 · Cited by 1,478 · cited 1×
“fasta) [20].”
Wertheim, H. F. L., Vos, M. D., Ott, A., van Belkum, A., Voß, A., Kluytmans, J. A. J. W., van Keulen, P. H. J., Vandenbroucke‐Grauls, C. M. J. E., Meester, M. H. M., & Verbrugh, H. A. (2004) · The Lancet · doi:10.1016/s0140-6736(04)16897-9 · Cited by 891 · cited 1×
“aureus infection in other body sites [12,13].”
A Similarity Measure Based on Species Proportions
Yue, J. C., & Clayton, M. K. (2005) · Communication in Statistics- Theory and Methods · doi:10.1080/sta-200066418 · Cited by 491 · cited 1×
“The shared file was used to calculate θ (1 − θ similarity index), a metric of community dissimilarity that takes the relative abundances of both shared and non-shared OTUs into account [21].”
MethodThe Human Nasal Microbiota and Staphylococcus aureus Carriage
Frank, D. N., Feazel, L. M., Bessesen, M. T., Price, C. S., Janoff, E. N., & Pace, N. R. (2010) · PLoS ONE · doi:10.1371/journal.pone.0010598 · Cited by 422 · cited 1×
“However, many studies have characterized the microbiota of the healthy human nares [6-11], which are adjacent and anterior to the nasal cavity.”
BackgroundAbreu, N. A., Nagalingam, N. A., Song, Y., Roediger, F. C., Pletcher, S. D., Goldberg, A. N., & Lynch, S. V. (2012) · Science Translational Medicine · doi:10.1126/scitranslmed.3003783 · Cited by 415 · cited 1×
“Signatures of sinusitis in the sinus microbiota have recently been identified [23].”
BackgroundJunqueira's Basic Histology: Text and Atlas
Mescher, A. L. (2013) · Cited by 401
Shifts in human skin and nares microbiota of healthy children and adults
Oh, J., Conlan, S., Polley, E. C., Segre, J. A., & Kong, H. H. (2012) · Genome Medicine · doi:10.1186/gm378 · Cited by 377
Yan, M., Pamp, S. J., Fukuyama, J., Hwang, P. H., Cho, D.-Y., Holmes, S., & Relman, D. A. (2013) · Cell Host & Microbe · doi:10.1016/j.chom.2013.11.005 · Cited by 351 · cited 2×
“In our study and other recent studies [4,5], the bacterial communities of the nasal cavities were dominated by Actinobacteria, Firmicutes, and in some cases, Proteobacteria (Figure 2).”
A High-Throughput DNA Sequence Aligner for Microbial Ecology Studies
Schloss, P. D. (2009) · PLoS ONE · doi:10.1371/journal.pone.0008230 · Cited by 329 · cited 1×
“The sequences were aligned to the Silva reference alignment [17,18].”
MethodComparative analyses of the bacterial microbiota of the human nostril and oropharynx
Lemon, K. P., Klepac-Ceraj, V., Schiffer, H. K., Brodie, E. L., Lynch, S. V., & Kolter, R. (2010) · mBio · doi:10.1128/mbio.00129-10 · Cited by 322 · cited 1×
“However, many studies have characterized the microbiota of the healthy human nares [6-11], which are adjacent and anterior to the nasal cavity.”
BackgroundThe Microbiome of the Middle Meatus in Healthy Adults
Ramakrishnan, V. R., Feazel, L. M., Gitomer, S. A., Ir, D., Robertson, C. E., & Frank, D. N. (2013) · PLoS ONE · doi:10.1371/journal.pone.0085507 · Cited by 209 · cited 2×
“In our study and other recent studies [4,5], the bacterial communities of the nasal cavities were dominated by Actinobacteria, Firmicutes, and in some cases, Proteobacteria (Figure 2).”
BackgroundResultDetection and clinical relevance ofStaphylococcus aureusnasal carriage: an update
Verhoeven, P. O., Gagnaire, J., Botelho-Nevers, É., Grattard, F., Carricajo, A., Lucht, F., Pozzetto, B., & Berthelot, P. (2013) · Expert Review of Anti-infective Therapy · doi:10.1586/14787210.2014.859985 · Cited by 132 · cited 1×
“aureus infection in other body sites [12,13].”
Theriot, C. M., & Young, V. B. (2013) · Gut Microbes · doi:10.4161/gmic.27131 · Cited by 83 · cited 1×
“Background Bacterial communities play important roles in the health of their hosts, including roles in immune system development [1], nutrition [2], and resistance to infection [3].”
BackgroundResident commensals shaping immunity
Ertürk-Hasdemir, D., & Kasper, D. L. (2013) · Current Opinion in Immunology · doi:10.1016/j.coi.2013.06.001 · Cited by 68 · cited 1×
“Background Bacterial communities play important roles in the health of their hosts, including roles in immune system development [1], nutrition [2], and resistance to infection [3].”
Background
Cited by
Sorted by citations
Bassis, C. M., Erb-Downward, J. R., Dickson, R. P., Freeman, C. M., Schmidt, T. M., Young, V. B., Beck, J. M., Curtis, J. L., & Huffnagle, G. B. (2015) · mBio · doi:10.1128/mbio.00037-15 · Cited by 839
Self-citationHeintz‐Buschart, A., Pandey, U., Wicke, T., Sixel‐Döring, F., Janzen, A., Sittig‐Wiegand, E., Trenkwalder, C., Oertel, W. H., Mollenhauer, B., & Wilmes, P. (2018) · Movement Disorders · doi:10.1002/mds.27105 · Cited by 554
Microbiome and Human Health: Current Understanding, Engineering, and Enabling Technologies
Aggarwal, N., Kitano, S., Puah, G. R. Y., Kittelmann, S., Hwang, I. Y., & Chang, M. W. (2022) · Chemical Reviews · doi:10.1021/acs.chemrev.2c00431 · Cited by 571
Respiratory viral infection-induced microbiome alterations and secondary bacterial pneumonia.
Hanada, S., Pirzadeh, M., Carver, K. Y., & Deng, J. C. (2018) · Frontiers in Immunology · doi:10.3389/fimmu.2018.02640 · Cited by 495
“In healthy adults, bacteria present in the nasal cavity are typically those associated with skin, predominantly members of the Actinobacteria (e.g., Corynebacterium spp., Propionibacterium spp.), followed by Firmicutes (e.g., Staphylococcus spp.), and Proteobacteria (67) (68) (69) .”
BackgroundMicrobiota-mediated colonization resistance: mechanisms and regulation
Caballero-Flores, G., Pickard, J. M., & Núñez, G. (2023) · Nature Reviews Microbiology · doi:10.1038/s41579-022-00833-7 · Cited by 474
Metadata
- Authors
- Bassis, C. M., Tang, A. L., Young, V. B., & Pynnonen, M. A.
- Affiliations
- University of Michigan (US)
- University of Cincinnati (US)
- Corresponding author
- Bassis, Christine M
- Venue
- Microbiome
- Published
- 2014-08-11
- Volume
- 2
- Issue
- 1
- Pages
- 27-27
- ISSN
- 2049-2618 (ISSN-L)
- PMC
- PMC4138944
- OpenAlex
- W2161225919
- Cited by
- 209
- References
- 25
- Citations by year
- 2026: 17 · 2025: 17 · 2024: 25 · 2023: 23 · 2022: 22 · 2021: 15 · 2020: 30 · 2019: 14 · 2018: 11 · 2017: 15 · 2016: 13 · 2015: 6
- FWCI
- 15.10
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- Microbiome (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Deep Blue (University of Michigan) (submittedVersion)
- Funders
- National Institutes of Health
- National Heart, Lung, and Blood Institute
- Topics
- Health Sciences › Dentistry › Periodontics › Oral microbiology and periodontitis research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Gut microbiota and health
- Physical Sciences › Environmental Science › Ecology › Microbial Community Ecology and Physiology
- Keywords
- tongue dorsum, buccal mucosa, Staphylococcaceae, bacterial community composition, healthy adults, 16S rRNA gene sequencing, actinobacteria, Firmicutes, Proteobacteria
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