The DOI matches its Crossref record; 1 of the 1 references it cites were found in a registry or an index.
Relations in biomedical ontologies
Open accessAbstract
To enhance the treatment of relations in biomedical ontologies we advance a methodology for providing consistent and unambiguous formal definitions of the relational expressions used in such ontologies in a way designed to assist developers and users in avoiding errors in coding and annotation. The resulting Relation Ontology can promote interoperability of ontologies and support new types of automated reasoning about the spatial and temporal dimensions of biological and medical phenomena.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Bard, J., Rhee, S. Y., & Ashburner, M. (2005) · Genome biology · doi:10.1186/gb-2005-6-2-r21 · Cited by 416
Cited by
The Gene Ontology Resource: 20 years and still GOing strong
The Gene Ontology Consortium (2019) · Nucleic Acids Research · doi:10.1093/nar/gky1055 · Cited by 4,747
Disease Ontology: a backbone for disease semantic integration
Schriml, L. M., Arze, C., Nadendla, S., Chang, Y.-W. W., Mazaitis, M., Felix, V., Feng, G., & Kibbe, W. A. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr972 · Cited by 929
The Sequence Ontology: a tool for the unification of genome annotations
Eilbeck, K., Lewis, S. E., Mungall, C. J., Yandell, M., Stein, L., Durbin, R., & Ashburner, M. (2005) · Genome Biology · doi:10.1186/gb-2005-6-5-r44 · Cited by 806
Self-citationUberon, an integrative multi-species anatomy ontology
Mungall, C. J., Torniai, C., Gkoutos, G. V., Lewis, S. E., & Haendel, M. A. (2012) · Genome biology · doi:10.1186/gb-2012-13-1-r5 · Cited by 732
Mungall, C. J., McMurry, J. A., Köhler, S., Balhoff, J. P., Borromeo, C., Brush, M., Carbon, S., Conlin, T., Dunn, N., Engelstad, M., et al. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw1128 · Cited by 441
Self-citationThe cognitive atlas: toward a knowledge foundation for cognitive neuroscience
Poldrack, R. A., Kittur, A., Kalar, D., Miller, E., Seppa, C., Gil, Y., Parker, D. S., Sabb, F. W., & Bilder, R. M. (2011) · Frontiers in Neuroinformatics · doi:10.3389/fninf.2011.00017 · Cited by 385
Controlled vocabularies and semantics in systems biology
Courtot, M., Juty, N., Knüpfer, C., Waltemath, D., Zhukova, A., Dräger, A., Dumontier, M., Finney, A., Golebiewski, M., Hastings, J., et al. (2011) · Molecular Systems Biology · doi:10.1038/msb.2011.77 · Cited by 316
“The branches of SBO are linked to the root by standard is_a relationships (Smith et al , 2005).”
BackgroundSemantic interoperability in the Internet of Things: An overview from the INTER-IoT perspective
Ganzha, M., Paprzycki, M., Pawłowski, W., Szmeja, P., & Wasielewska, K. (2017) · Journal of Network and Computer Applications · doi:10.1016/j.jnca.2016.08.007 · Cited by 208
Michie, S., West, R., Finnerty, A. N., Norris, E., Wright, A. J., Marques, M. M., Johnston, M., Kelly, M. P., Thomas, J., & Hastings, J. (2020) · Wellcome Open Research · doi:10.12688/wellcomeopenres.15902.1 · Cited by 76
Harmonizing semantic annotations for computational models in biology
Neal, M. L., König, M., Nickerson, D., Mısırlı, G., Kalbasi, R., Dräger, A., Atalag, K., Chelliah, V., Cooling, M. T., Cook, D. L., et al. (2019) · Briefings in Bioinformatics · doi:10.1093/bib/bby087 · Cited by 74
Pan, H., Deutsch, G. H., Wert, S. E., Subcommittee, O. B. O. T. O., Ambalavanan, N., Ansong, C., Ardini-Poleske, M. E., Bagwell, J., Chan, C., Deutsch, G. H., et al. (2019) · Journal of Biomedical Semantics · doi:10.1186/s13326-019-0209-1 · Cited by 73
Semantic Web meets Integrative Biology: a survey
Chen, H., Yu, T., & Chen, J. Y. (2013) · Briefings in Bioinformatics · doi:10.1093/bib/bbs014 · Cited by 65
neuroVIISAS: Approaching Multiscale Simulation of the Rat Connectome
Schmitt, O., & Eipert, P. (2012) · Neuroinformatics · doi:10.1007/s12021-012-9141-6 · Cited by 51
ACE: the Advanced Cohort Engine for searching longitudinal patient records
Callahan, A., Polony, V., Posada, J. D., Banda, J. M., Gombar, S., & Shah, N. H. (2021) · Journal of the American Medical Informatics Association · doi:10.1093/jamia/ocab027 · Cited by 22
(2011) · RUCforsk (Roskilde University) · Cited by 5
Metadata
- Authors
- Smith, B., Ceusters, W., Klagges, B., Köhler, J., Kumar, A., Lomax, J., Mungall, C., Neuhaus, F., Rector, A. L., & Rosse, C.
- Venue
- Genome Biology
- Published
- 2005-04-28
- Volume
- 6
- Issue
- 5
- Pages
- R46-R46
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2103260426
- Cited by
- 1,018
- References
- 1
- FWCI
- 26.39
- Type
- journal article
- Language
- en
- Open access
- gold
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.
