The DOI matches its Crossref record; 8 of the 8 references it cites were found in a registry or an index.
Simultaneous alignment of short reads against multiple genomes
Open accessAbstract
Genome resequencing with short reads generally relies on alignments against a single reference. GenomeMapper supports simultaneous mapping of short reads against multiple genomes by integrating related genomes (e.g., individuals of the same species) into a single graph structure. It constitutes the first approach for handling multiple references and introduces representations for alignments against complex structures. Demonstrated benefits include access to polymorphisms that cannot be identified by alignments against the reference alone. Download GenomeMapper at http://1001genomes.org.
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Cites
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Li, R., Li, Y., Kristiansen, K., & Wang, J. (2008) · Bioinformatics · doi:10.1093/bioinformatics/btn025 · Cited by 3,597
Recurring mutations found by sequencing an acute myeloid leukemia genome
Mardis, E. R., Ding, L., Dooling, D. J., Larson, D. E., McLellan, M. D., Chen, K., Koboldt, D. C., Fulton, R. S., Delehaunty, K. D., McGrath, S. D., et al. (2009) · New England Journal of Medicine · doi:10.1056/nejmoa0903840 · Cited by 2,219
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MethodPersonalized copy number and segmental duplication maps using next-generation sequencing
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A highly annotated whole-genome sequence of a Korean individual
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Cited by
Assembly algorithms for next-generation sequencing data
Miller, J. R., Koren, S., & Sutton, G. (2010) · Genomics · doi:10.1016/j.ygeno.2010.03.001 · Cited by 1,154
A survey of sequence alignment algorithms for next-generation sequencing
Li, H., & Homer, N. (2010) · Briefings in Bioinformatics · doi:10.1093/bib/bbq015 · Cited by 875
The Arabidopsis lyrata genome sequence and the basis of rapid genome size change
Hu, T. T., Pattyn, P., Bakker, E. G., Cao, J., Cheng, J.-F., Clark, R. M., Fahlgren, N., Fawcett, J. A., Grimwood, J., Gundlach, H., et al. (2011) · Nature Genetics · doi:10.1038/ng.807 · Cited by 872
Self-citationGenome graphs and the evolution of genome inference
Paten, B., Novak, A. M., Eizenga, J. M., & Garrison, E. (2017) · Genome Research · doi:10.1101/gr.214155.116 · Cited by 351
Eizenga, J. M., Novak, A. M., Sibbesen, J. A., Heumos, S., Ghaffaari, A., Hickey, G., Chang, X., Seaman, J. D., Rounthwaite, R., Ebler, J., et al. (2020) · Annual Review of Genomics and Human Genetics · doi:10.1146/annurev-genom-120219-080406 · Cited by 320
Metadata
- Authors
- Schneeberger, K., Hagmann, J., Ossowski, S., Warthmann, N., Gesing, S., Kohlbacher, O., & Weigel, D.
- Venue
- Genome Biology
- Published
- 2009-09-17
- Volume
- 10
- Issue
- 9
- Pages
- R98-R98
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2129264270
- Cited by
- 237
- References
- 8
- FWCI
- 4.80
- Type
- journal article
- Language
- en
- Open access
- gold
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