The DOI matches its Crossref record; 12 of the 12 references it cites were found in a registry or an index.
Web Apollo: a web-based genomic annotation editing platform
Open accessAbstract
Web Apollo is the first instantaneous, collaborative genomic annotation editor available on the web. One of the natural consequences following from current advances in sequencing technology is that there are more and more researchers sequencing new genomes. These researchers require tools to describe the functional features of their newly sequenced genomes. With Web Apollo researchers can use any of the common browsers (for example, Chrome or Firefox) to jointly analyze and precisely describe the features of a genome in real time, whether they are in the same room or working from opposite sides of the world.
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Cites
The Sequence Alignment/Map format and SAMtools
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., Marth, G., Abecasis, G., Durbin, R., & 1000 Genome Project Data Processing Subgroup (2009) · Bioinformatics · doi:10.1093/bioinformatics/btp352 · Cited by 62,041
RNA-Seq: a revolutionary tool for transcriptomics
Wang, Z., Gerstein, M., & Snyder, M. (2009) · Nature Reviews Genetics · doi:10.1038/nrg2484 · Cited by 13,174
<tt>BLAT</tt> —The <tt>BLAST</tt> -Like Alignment Tool
Kent, W. J. (2002) · Genome Research · doi:10.1101/gr.229202 · Cited by 8,480
The zebrafish reference genome sequence and its relationship to the human genome.
Howe, K., Clark, M. D., Torroja, C. F., Torrance, J., Berthelot, C., Muffato, M., Collins, J. E., Humphray, S., McLaren, K., Matthews, L., et al. (2013) · Nature · doi:10.1038/nature12111 · Cited by 5,100
GENCODE: The reference human genome annotation for The ENCODE Project
Harrow, J., Frankish, A., Gonzalez, J. M., Tapanari, E., Diekhans, M., Kokocinski, F., Aken, B. L., Barrell, D., Zadissa, A., Searle, S., et al. (2012) · Genome Research · doi:10.1101/gr.135350.111 · Cited by 4,585
Reactome: a database of reactions, pathways and biological processes
Croft, D., O'Kelly, G., Wu, G., Haw, R., Gillespie, M., Matthews, L., Caudy, M., Garapati, P., Gopinath, G., Jassal, B., et al. (2011) · Nucleic Acids Research · doi:10.1093/nar/gkq1018 · Cited by 1,751
Self-citationStanke, M., Schöffmann, O., Morgenstern, B., & Waack, S. (2006) · BMC Bioinformatics · doi:10.1186/1471-2105-7-62 · Cited by 1,304
The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
The Bovine Genome Sequencing and Analysis Consortium, Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., et al. (2009) · Science · doi:10.1126/science.1169588 · Cited by 1,287
Self-citationNCBI Reference Sequences (RefSeq): current status, new features and genome annotation policy
Pruitt, K. D., Tatusova, T., Brown, G. R., & Maglott, D. R. (2012) · Nucleic Acids Research · doi:10.1093/nar/gkr1079 · Cited by 1,149
The UCSC genome browser and associated tools
Kuhn, R. M., Haussler, D., & Kent, W. J. (2013) · Briefings in Bioinformatics · doi:10.1093/bib/bbs038 · Cited by 883
Cited by
Araport11: a complete reannotation of the Arabidopsis thaliana reference genome
Cheng, C., Krishnakumar, V., Chan, A. P., Thibaud‐Nissen, F., Schobel, S., & Town, C. D. (2017) · The Plant Journal · doi:10.1111/tpj.13415 · Cited by 1,317
JBrowse: a dynamic web platform for genome visualization and analysis
Buels, R., Yao, E., Diesh, C. M., Hayes, R. D., Munoz-Torres, M., Helt, G., Goodstein, D. M., Elsik, C. G., Lewis, S. E., Stein, L., et al. (2016) · Genome Biology · doi:10.1186/s13059-016-0924-1 · Cited by 758
Self-citationImproved reference genome of Aedes aegypti informs arbovirus vector control
Matthews, B. J., Dudchenko, O., Kingan, S. B., Koren, S., Antoshechkin, I., Crawford, J. E., Glassford, W. J., Herre, M., Redmond, S. N., Rose, N. H., et al. (2018) · Nature · doi:10.1038/s41586-018-0692-z · Cited by 600
A field guide to whole‐genome sequencing, assembly and annotation
Ekblom, R., & Wolf, J. B. W. (2014) · Evolutionary Applications · doi:10.1111/eva.12178 · Cited by 428
Smith, J. J., Timoshevskaya, N., Ye, C., Holt, C., Keinath, M. C., Parker, H. J., Cook, M. E., Hess, J. E., Narum, S. R., Lamanna, F., et al. (2018) · Nature Genetics · doi:10.1038/s41588-017-0036-1 · Cited by 305
Metadata
- Authors
- Lee, E., Helt, G. A., Reese, J. T., Munoz-Torres, M. C., Childers, C. P., Buels, R. M., Stein, L., Holmes, I. H., Elsik, C. G., & Lewis, S. E.
- Venue
- Genome Biology
- Published
- 2013-08-30
- Volume
- 14
- Issue
- 8
- Pages
- R93-R93
- ISSN
- 1465-6906 (ISSN-L)
- 1474-760X
- OpenAlex
- W2152672184
- Cited by
- 380
- References
- 12
- FWCI
- 7.93
- Type
- journal article
- Language
- en
- Open access
- gold
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- Lee, E., Helt, G. A., Reese, J. T., Munoz-Torres, M. C., Childers, C. P., Buels, R. M., Stein, L., Holmes, I. H., Elsik, C. G., & Lewis, S. E. (2013). Web Apollo: a web-based genomic annotation editing platform. Genome Biology. https://doi.org/10.1186/gb-2013-14-8-r93
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