The Genome Sequence of Taurine Cattle: A Window to Ruminant Biology and Evolution
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A survey of genetic diversity of cattle suggests two domestication events in Asia and selection by husbandry.
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The yak draft assembly total length of 2,657 Mb is close to the 2,649 Mb of sequence obtained for the cattle genome (UMD 3.1).
“with a total length of 2,657 Mb, close to the 2,649 Mb of sequence obtained for the cattle genome 10 (UMD 3.1)”
From The yak genome and adaptation to life at high altitude (2012) · cites this paper as [10]
The assembly passage (section labeled Abstract; page unavailable) confirms that the paper reports a sequenced cattle genome, but it discusses Btau3.1 and Btau4.0, not UMD 3.1. It gives an estimated genome size of 2.87 Gbp and does not substantiate the cited figure of 2,649 Mb of sequence. (LLM, conf=0.84)
Experimental — accuracy not yet measuredNearly 49% of the saola genome is composed of repetitive elements, similar to cattle (48%), with LINEs making up 26.22%.
“Nearly 49% of the genome is composed of repetitive elements, similar to that of cattle (48%),39 the majority of which are long interspersed nuclear elements (LINEs; 26.22%)”
From Genomes of critically endangered saola are shaped by population structure and purging (2025) · cites this paper as [39]
The citation is attached to the cattle comparison, specifically the claim that repetitive elements make up 48% of the cattle genome. The repeat discussion in our copy (section labelled Abstract; page unavailable) says ruminant-specific repeats comprise 27%, but gives no percentage for all cattle repetitive elements. Searches for 48% and total repeat content did not verify the cited figure; the 27% figure describes a subset, not a contrary total. (LLM, conf=0.74)
Experimental — accuracy not yet measuredThe heterozygosity rate of the sequenced yak was 0.89 × 10^-3, approximately 1.5 times higher than that estimated for cattle (0.59 × 10^-3).
“The heterozygosity rate (0.89 × 10 -3 ) was approximately 1.5 times higher than that estimated for cattle (0.59 × 10 -3 ) (refs.10,13).”
From The yak genome and adaptation to life at high altitude (2012) · cites this paper as [10]
The cattle-genome assembly passage (section labelled Abstract; page unavailable) discusses SNP mapping accuracy, not a heterozygosity estimate. Searches for “0.59,” “heterozygosity rate,” and heterozygous sites found no passage in our copy giving the cattle value or the stated comparison with yak. (LLM, conf=0.73)
Experimental — accuracy not yet measuredThe probability of there being 50 or more DEGs among the 654 aggression-associated genes was significantly above chance (p = 0.005), given the estimated 22,000 genes in the bovine genome.
“Given the estimated 22,000 genes in the bovine genome [44], the probability of there being 50 or more DEGs among the 654 aggression-associated genes was significantly above chance (p = 0.005).”
From Gene expression profiles underlying aggressive behavior in the prefrontal cortex of cattle (2021) · cites this paper as [44]
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Cites
Cellular Scaling Rules for the Brains of Marsupials: Not as “Primitive” as Expected
Santos, S. E. D., Porfírio, J., Cunha, F., Manger, P. R., Tavares, W. C., Pessôa, L. M., Raghanti, M. A., Sherwood, C. C., & Herculano‐Houzel, S. (2017) · Brain Behavior and Evolution · doi:10.1159/000452856 · Cited by 2,651 · see citing works
FcRn: the neonatal Fc receptor comes of age
Roopenian, D. C., & Akilesh, S. (2007) · Nature Reviews Immunology · doi:10.1038/nri2155 · Cited by 2,346 · see citing works
Viruses and interferon: a fight for supremacy
Katze, M. G., He, Y., & Gale, M. (2002) · Nature Reviews Immunology · doi:10.1038/nri888 · Cited by 1,419 · see citing works
Recent Segmental Duplications in the Human Genome
Bailey, J. A., Gu, Z., Clark, R. A., Reinert, K., Samonte, R. V., Schwartz, S., Adams, M. D., Myers, E. W., Li, P. W., & Eichler, E. E. (2002) · Science · doi:10.1126/science.1072047 · Cited by 1,355 · see citing works
Self-citationEvidence for higher rates of nucleotide substitution in rodents than in man.
Wu, C., & Li, W. (1985) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.82.6.1741 · Cited by 926 · see citing works
Dynamics of Mammalian Chromosome Evolution Inferred from Multispecies Comparative Maps
Murphy, W. J., Larkin, D. M., der Wind, A. E.-V., Bourque, G., Tesler, G., Auvil, L. S., Beever, J. E., Chowdhary, B. P., Galibert, F., Gatzke, L., et al. (2005) · Science · doi:10.1126/science.1111387 · Cited by 594 · see citing works
Self-citationPrimate segmental duplications: crucibles of evolution, diversity and disease
Bailey, J. A., & Eichler, E. E. (2006) · Nature Reviews Genetics · doi:10.1038/nrg1895 · Cited by 586 · see citing works
Self-citationModrek, B., & Lee, C. J. (2003) · Nature Genetics · doi:10.1038/ng1159 · Cited by 523 · see citing works
Mammalian phylogenomics comes of age
Murphy, W. J., Pevzner, P. A., & O’Brien, S. J. (2004) · Trends in Genetics · doi:10.1016/j.tig.2004.09.005 · Cited by 348 · see citing works
Zhang, S., Boisson‐Dupuis, S., Chapgier, A. L. A., Yang, K., Bustamante, J. C., Puel, A., Pïcard, C., Abel, L., Jouanguy, E., & Casanova, J. (2008) · Immunological Reviews · doi:10.1111/j.1600-065x.2008.00698.x · Cited by 320 · see citing works
How prevalent is functional alternative splicing in the human genome?
Sorek, R., Shamir, R., & Ast, G. (2003) · Trends in Genetics · doi:10.1016/j.tig.2003.12.004 · Cited by 305 · see citing works
Schmidhauser, C., Casperson, G. F., Myers, C., Sanzo, K. T., Bolten, S. L., & Bissell, M. J. (1992) · Molecular Biology of the Cell · doi:10.1091/mbc.3.6.699 · Cited by 186 · see citing works
Liu, Y., Qin, X., Song, X., Jiang, H., Shen, Y., Durbin, K. J., Lien, S., Kent, M., Sodeland, M., Ren, Y., et al. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-180 · Cited by 159 · see citing works
Self-citationInterferons and the maternal–conceptus dialog in mammals
Roberts, R. M., Chen, Y., Ezashi, T., et al. (2007) · Seminars in Cell and Developmental Biology · doi:10.1016/j.semcdb.2007.10.007 · Cited by 139 · see citing works
Self-citationder Wind, A. E.-V., Larkin, D. M., Green, C. A., Elliott, J. S., Olmstead, C. A., Chiu, R., Schein, J. E., Marra, M. A., Womack, J. E., & Lewin, H. A. (2005) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0509285102 · Cited by 135 · see citing works
Self-citationMalik, H. S., & Eickbush, T. H. (1998) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a026020 · Cited by 119 · see citing works
Structural organization of the bovine cathelicidin gene family and identification of a novel member1
Scocchi, M., Wang, S., & Zanetti, M. (1997) · FEBS Letters · doi:10.1016/s0014-5793(97)01310-0 · Cited by 94 · see citing works
Molenaar, A. J., Harris, D. P., Rajan, G. H., Pearson, M. L., Callaghan, M. R., Sommer, L., Farr, V. C., Oden, K. E., Miles, M. C., Petrova, R. S., et al. (2009) · Biomarkers · doi:10.1080/13547500902730714 · Cited by 93 · see citing works
Self-citationShimamura, M., Abe, H., Nikaido, M., Ohshima, K., & Okada, N. (1999) · Molecular biology and evolution · doi:10.1093/oxfordjournals.molbev.a026194 · Cited by 93 · see citing works
Multispecies comparative analysis of a mammalian-specific genomic domain encoding secretory proteins
Rijnkels, M., Elnitski, L. L., Miller, W., & Rosen, J. M. (2003) · Genomics · doi:10.1016/s0888-7543(03)00114-9 · Cited by 86 · see citing works
Self-citationExpression of the neonatal Fc receptor (FcRn) in the bovine mammary gland
Mayer, B., Doleschall, M., Bender, B., et al. (2005) · Journal of Dairy Research · doi:10.1017/s0022029905001135 · Cited by 76 · see citing works
Immunological activities of milk
Newby, T. J., Stokes, C., & Bourne, F. J. (1982) · Veterinary Immunology and Immunopathology · doi:10.1016/0165-2427(82)90032-0 · Cited by 59 · see citing works
Hashizume, K., Ushizawa, K., PATEL, O. V., et al. (2006) · Reproduction Fertility and Development · doi:10.1071/rd06118 · Cited by 57 · see citing works
Clawson, M. L., Heaton, M. P., Chitko-McKown, C. G., et al. (2004) · Mammalian Genome · doi:10.1007/s00335-003-2320-x · Cited by 35 · see citing works
Self-citationDiscovery of eight novel divergent homologs expressed in cattle placenta
Larson, J. H., Kumar, C. G., Everts, R. E., et al. (2006) · Physiological Genomics · doi:10.1152/physiolgenomics.00307.2005 · Cited by 33 · see citing works
Self-citationEvolution of the bovine lysozyme gene family: Changes in gene expression and reversion of function
Irwin, D. M. (1995) · Journal of Molecular Evolution · doi:10.1007/bf01215177 · Cited by 33 · see citing works
Molecular evolution of Bov-B LINEs in vertebrates
Kordiš, D., & Gubenšek, F. (1999) · Gene · doi:10.1016/s0378-1119(99)00260-7 · Cited by 31 · see citing works
Genomic organization and evolution of the ULBP genes in cattle
Larson, J. H., Marron, B. M., Beever, J. E., et al. (2006) · BMC Genomics · doi:10.1186/1471-2164-7-227 · Cited by 28 · see citing works
Self-citationPrasad, A., Schiex, T., McKay, S., Murdoch, B. M., Wang, Z., Womack, J. E., Stothard, P., & Moore, S. S. (2007) · BMC Genomics · doi:10.1186/1471-2164-8-310 · Cited by 22 · see citing works
Self-citationNilsen, H., Hayes, B. J., Berg, P. R., et al. (2008) · Animal Genetics · doi:10.1111/j.1365-2052.2007.01686.x · Cited by 18 · see citing works
Self-citationKeynote Address at the 1985 Annual Meeting
Willham, R. L. (1986) · Journal of Animal Science · doi:10.2527/jas1986.6261742x · Cited by 10 · see citing works
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Groenen, M. A. M., Archibald, A. L., Uenishi, H., Tuggle, C. K., Takeuchi, Y., Rothschild, M. F., Rogel-Gaillard, C., Park, C., Denis Milan, A., Megens, H., et al. (2012) · Nature · doi:10.1038/nature11622 · Cited by 1,386 · see citing works
Self-citationThe Ecoresponsive Genome of Daphnia pulex
Colbourne, J. K., Pfrender, M. E., Gilbert, D., Thomas, W. K., Tucker, A. E., Oakley, T. H., Tokishita, S., Aerts, A. L., Arnold, G. J., Basu, M. K., et al. (2011) · Science · doi:10.1126/science.1197761 · Cited by 1,204 · see citing works
Self-citationThe Ensembl gene annotation system
Aken, B. L., Ayling, S., Barrell, D. G., Clarke, L., Curwen, V., Fairley, S., Fernandez-Banet, J., Billis, K., Girón, C. G., Hourlier, T., et al. (2016) · Database · doi:10.1093/database/baw093 · Cited by 1,126 · see citing works
Self-citationKriventseva, E. V., Kuznetsov, D. A., Tegenfeldt, F., Manni, M., Dias, R. O., Simão, F. A., & Zdobnov, E. M. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky1053 · Cited by 1,138 · see citing works
Self-citationThe yak genome and adaptation to life at high altitude
Qiu, Q., Zhang, G., Ma, T., Qian, W., Wang, J., Ye, Z., Cao, C., Hu, Q., Kim, J., Larkin, D. M., et al. (2012) · Nature Genetics · doi:10.1038/ng.2343 · Cited by 971 · see citing works
Self-citationA decade’s perspective on DNA sequencing technology
Mardis, E. R. (2011) · Nature · doi:10.1038/nature09796 · Cited by 913 · see citing works
Sequencing technologies and genome sequencing
Pareek, C. S., Smoczynski, R., & Tretyn, A. (2011) · Journal of Applied Genetics · doi:10.1007/s13353-011-0057-x · Cited by 868 · see citing works
Genome Sequence, Comparative Analysis, and Population Genetics of the Domestic Horse
Wade, C. M., Giulotto, E., Sigurdsson, S., Zoli, M., Gnerre, S., Imsland, F., Lear, T. L., Adelson, D. L., Bailey, E., Bellone, R. R., et al. (2009) · Science · doi:10.1126/science.1178158 · Cited by 822 · see citing works
Self-citation<i>De novo</i> assembly of the cattle reference genome with single-molecule sequencing
Rosen, B. D., Bickhart, D. M., Schnabel, R. D., Koren, S., Elsik, C. G., Tseng, E., Rowan, T. N., Low, W. Y., Zimin, A., Couldrey, C., et al. (2020) · GigaScience · doi:10.1093/gigascience/giaa021 · Cited by 802 · see citing works
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vonHoldt, B. M., Pollinger, J. P., Lohmueller, K. E., Han, E., Parker, H. G., Quignon, P., Degenhardt, J. D., Boyko, A. R., Earl, D. A., Auton, A., et al. (2010) · Nature · doi:10.1038/nature08837 · Cited by 804 · see citing works
Bickhart, D. M., Rosen, B. D., Koren, S., Sayre, B. L., Hastie, A. R., Chan, S., Lee, J., Lam, E. T., Liachko, I., Sullivan, S. T., et al. (2017) · Nature Genetics · doi:10.1038/ng.3802 · Cited by 620 · see citing works
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Dong, Y., Xie, M., Jiang, Y., Xiao, N., Du, X., Zhang, W., Tosser‐Klopp, G., Wang, J., Yang, S., Liang, J., et al. (2012) · Nature Biotechnology · doi:10.1038/nbt.2478 · Cited by 524 · see citing works
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Hayes, B. J., & Daetwyler, H. D. (2018) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-020518-115024 · Cited by 467 · see citing works
Hu, Z., Park, C. A., & Reecy, J. M. (2018) · Nucleic Acids Research · doi:10.1093/nar/gky1084 · Cited by 450 · see citing works
Self-citationZdobnov, E. M., Tegenfeldt, F., Kuznetsov, D., Waterhouse, R. M., Simão, F. A., Ioannidis, P., Seppey, M., Loetscher, A., & Kriventseva, E. V. (2017) · Nucleic Acids Research · doi:10.1093/nar/gkw1119 · Cited by 438 · see citing works
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Dalloul, R. A., Long, J. A., Zimin, A. V., Aslam, L., Beal, K., Ann Blomberg, L., Bouffard, P., Burt, D. W., Crasta, O., Crooijmans, R. P. M. A., et al. (2010) · PLoS Biology · doi:10.1371/journal.pbio.1000475 · Cited by 416 · see citing works
Self-citationHanukoglu, I., & Hanukoglu, A. (2016) · Gene · doi:10.1016/j.gene.2015.12.061 · Cited by 387 · see citing works
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Self-citationAndersson, L., Archibald, A., Bottema, C., Brauning, R., Burgess, S., Burt, D., Casas, E., Cheng, H. H., Clarke, L., Couldrey, C., et al. (2015) · Genome Biology · doi:10.1186/s13059-015-0622-4 · Cited by 310 · see citing works
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Self-citationBermejo‐Álvarez, P., Rizos, D. V., Rath, D., Lonergan, P., & Gutiérrez‐Adán, A. (2010) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0913843107 · Cited by 307 · see citing works
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Self-citationWang, F., Ekiert, D. C., Ahmad, I., Yu, W., Zhang, Y., Bazirgan, O. A., Torkamani, A., Raudsepp, T., Mwangi, W., Criscitiello, M. F., et al. (2013) · Cell · doi:10.1016/j.cell.2013.04.049 · Cited by 224 · see citing works
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Self-citationWilson, G. J., Seo, K. S., Cartwright, R. A., Connelley, T., Chuang-Smith, O. N., Merriman, J. A., Guinane, C. M., Park, J. Y., Bohach, G. A., Schlievert, P. M., et al. (2011) · PLoS Pathogens · doi:10.1371/journal.ppat.1002271 · Cited by 205 · see citing works
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Giuffra, E., & Tuggle, C. K. (2018) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-020518-114913 · Cited by 201 · see citing works
Harnessing the genetics of the modern dairy cow to continue improvements in feed efficiency
VandeHaar, M. J., Armentano, L. E., WEIGEL, K. A., Spurlock, D. M., Tempelman, R. J., & Veerkamp, R. F. (2016) · Journal of Dairy Science · doi:10.3168/jds.2015-10352 · Cited by 200 · see citing works
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Gautier, M., Flori, L., Riebler, A., Jaffrézic, F., Laloë, D., Gut, I. G., Moazami‐Goudarzi, K., & Foulley, J. (2009) · BMC Genomics · doi:10.1186/1471-2164-10-550 · Cited by 196 · see citing works
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Dawson, H. D., Loveland, J. E., Pascal, G., Gilbert, J. G. R., Uenishi, H., Mann, K. M., Sang, Y., Zhang, J., Carvalho‐Silva, D., Hunt, T., et al. (2013) · BMC Genomics · doi:10.1186/1471-2164-14-332 · Cited by 192 · see citing works
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Self-citationLindholm‐Perry, A. K., Sexten, A. K., Kuehn, L. A., Smith, T. P. L., King, D. A., Shackelford, S. D., WHEELER, T. L., Ferrell, C. L., Jenkins, T. G., Snelling, W. M., et al. (2011) · BMC Genetics · doi:10.1186/1471-2156-12-103 · Cited by 180 · see citing works
Self-citationWhole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery
Stothard, P., Choi, J.-W., Basu, U., Thomson, J. M., Meng, Y., Liao, X., & Moore, S. S. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-559 · Cited by 179 · see citing works
Self-citationHuang, J., Ju, Z., Li, Q., Hou, Q., Wang, C., Li, J., Li, R., Wang, L., Sun, T., Hang, S., et al. (2011) · International Journal of Biological Sciences · doi:10.7150/ijbs.7.1016 · Cited by 177 · see citing works
The Influence of Milk Oligosaccharides on Microbiota of Infants: Opportunities for Formulas
Chichlowski, M., German, J. B., Lebrilla, C. B., & Mills, D. A. (2011) · Annual Review of Food Science and Technology · doi:10.1146/annurev-food-022510-133743 · Cited by 174 · see citing works
Self-citationComputational challenges in the analysis of ancient DNA
Prüfer, K., Stenzel, U., Hofreiter, M., Pääbo, S., Kelso, J., & Green, R. E. (2010) · Genome Biology · doi:10.1186/gb-2010-11-5-r47 · Cited by 155 · see citing works
“domestication process Cattle [53]”
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Meade, K. G., & O’Farrelly, C. (2019) · Frontiers in Immunology · doi:10.3389/fimmu.2018.03072 · Cited by 172 · see citing works
Transposons, Genome Size, and Evolutionary Insights in Animals
Canapa, A., Barucca, M., Biscotti, M. A., Forconi, M., & Olmo, E. (2015) · Cytogenetic and Genome Research · doi:10.1159/000444429 · Cited by 164 · see citing works
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Morrison, J. L., Berry, M. J., Botting, K. J., Darby, J. R. T., Frasch, M. G., Gatford, K. L., Giussani, D. A., Gray, C. L., Harding, R., Herrera, E. A., et al. (2018) · American Journal of Physiology-Regulatory, Integrative and Comparative Physiology · doi:10.1152/ajpregu.00391.2017 · Cited by 171 · see citing works
Self-citationEvery genome sequence needs a good mapPreprint
Lewin, H. A., Larkin, D. M., Pontius, J. U., & O’Brien, S. J. (2009) · Genome Research · doi:10.1101/gr.094557.109 · Cited by 172 · see citing works
Self-citationCopy number variation in the bovine genome
Fadista, J., Thomsen, B., Holm, L., & Bendixen, C. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-284 · Cited by 168 · see citing works
Biology and Diseases of Ruminants (Sheep, Goats, and Cattle)
Underwood, W. J., Blauwiekel, R., Delano, M. L., et al. (2015) · Elsevier eBooks · doi:10.1016/b978-0-12-409527-4.00015-8 · Cited by 167 · see citing works
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Marquès‐Bonet, T., Girirajan, S., & Eichler, E. E. (2009) · Trends in Genetics · doi:10.1016/j.tig.2009.08.002 · Cited by 160 · see citing works
Self-citationChen, Y., Gondro, C., Quinn, K., Herd, R. M., Parnell, P., & Vanselow, B. A. (2011) · Animal Genetics · doi:10.1111/j.1365-2052.2011.02182.x · Cited by 162 · see citing works
Panchaud, A., Affolter, M., & Kussmann, M. (2012) · Journal of Proteomics · doi:10.1016/j.jprot.2011.12.022 · Cited by 159 · see citing works
Livestock 2.0 – genome editing for fitter, healthier, and more productive farmed animals
Tait‐Burkard, C., Doeschl-Wilson, A. B., McGrew, M. J., Archibald, A. L., Sang, H., Houston, R. D., Whitelaw, B., & Watson, M. (2018) · Genome biology · doi:10.1186/s13059-018-1583-1 · Cited by 159 · see citing works
Cánovas, Á., Reverter, A., DeAtley, K. L., Ashley, R. L., Colgrave, M. L., Fortes, M. R. S., Islas‐Trejo, A., Lehnert, S. A., Neto, L. R. P., Rincón, G., et al. (2014) · PLoS ONE · doi:10.1371/journal.pone.0102551 · Cited by 155 · see citing works
Self-citationDange, R. B., Agarwal, D., Masson, G. S., et al. (2014) · Cardiovascular Research · doi:10.1093/cvr/cvu067 · Cited by 154 · see citing works
Findeisen, P., Mühlhausen, S., Dempewolf, S., Hertzog, J., Zietlow, A., Carlomagno, T., & Kollmar, M. (2014) · Genome Biology and Evolution · doi:10.1093/gbe/evu187 · Cited by 144 · see citing works
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Sandor, C., Li, W., Coppieters, W. R., Druet, T., Charlier, C., & Georges, M. (2012) · PLoS Genetics · doi:10.1371/journal.pgen.1002854 · Cited by 151 · see citing works
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Bae, J. S., Cheong, H. S., Kim, L. H., NamGung, S., Park, T. J., Chun, J.-Y., Kim, Y., Pasaje, C. F. A., Lee, J. S., & Shin, H. D. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-232 · Cited by 148 · see citing works
Self-citationUtsunomiya, Y. T., do Carmo, A. S., Carvalheiro, R., Neves, H. H. D. R., Matos, M. C., Zavarez, L. B., O’Brien, A. M. P., Sölkner, J., McEwan, J. C., Cole, J. B., et al. (2013) · BMC Genetics · doi:10.1186/1471-2156-14-52 · Cited by 147 · see citing works
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Bickhart, D. M., & Liu, G. E. (2014) · Frontiers in Genetics · doi:10.3389/fgene.2014.00037 · Cited by 143 · see citing works
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Waterhouse, R. M., Zdobnov, E. M., Tegenfeldt, F., Li, J., & Kriventseva, E. V. (2010) · Nucleic Acids Research · doi:10.1093/nar/gkq930 · Cited by 140 · see citing works
Self-citationMorrison, L. J., Vezza, L., Rowan, T., & Hope, J. C. (2016) · Trends in Parasitology · doi:10.1016/j.pt.2016.04.012 · Cited by 146 · see citing works
Kemper, K. E., Reich, C. M., Bowman, P. J., Jagt, C. J. V., Chamberlain, A. J., Mason, B., Hayes, B. J., & Goddard, M. E. (2015) · Genetics Selection Evolution · doi:10.1186/s12711-014-0074-4 · Cited by 137 · see citing works
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Wilkinson, L. (2011) · IEEE Transactions on Visualization and Computer Graphics · doi:10.1109/tvcg.2011.56 · Cited by 136 · see citing works
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Loor, J. J., Bionaz, M., & Drackley, J. K. (2013) · Annual Review of Animal Biosciences · doi:10.1146/annurev-animal-031412-103728 · Cited by 132 · see citing works
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Fontanesi, L., Martelli, P. L., Beretti, F., Riggio, V., Dall’Olio, S., Colombo, M., Casadio, R., Russo, V., & Portolano, B. (2010) · BMC Genomics · doi:10.1186/1471-2164-11-639 · Cited by 133 · see citing works
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Utsunomiya, Y. T., Milanesi, M., Fortes, M. R. S., Porto‐Neto, L. R., Utsunomiya, A. T. H., Silva, M. V. G. B., Garcia, J. F., & Ajmone‐Marsan, P. (2019) · Animal Genetics · doi:10.1111/age.12836 · Cited by 128 · see citing works
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Cosart, T., Beja‐Pereira, A., Chen, S., Ng, S. B. H., Shendure, J., & Luikart, G. (2011) · BMC Genomics · doi:10.1186/1471-2164-12-347 · Cited by 129 · see citing works
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Bolormaa, S., Neto, L. R. P., Zhang, Y. D., Bunch, R. J., Harrison, B. E., Goddard, M. E., & Barendse, W. (2011) · Journal of Animal Science · doi:10.2527/jas.2010-3138 · Cited by 128 · see citing works
Reference-assisted chromosome assembly
Kim, J., Larkin, D. M., Cai, Q., Asan, Zhang, Y., Ge, R.-L., Auvil, L., Capitanu, B., Zhang, G., Lewin, H. A., et al. (2013) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1220349110 · Cited by 128 · see citing works
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McCabe, M. S., Waters, S. M., Morris, D. G., Kenny, D. A., Lynn, D. J., & Creevey, C. J. (2012) · BMC Genomics · doi:10.1186/1471-2164-13-193 · Cited by 125 · see citing works
Self-citationIbeagha-Awemu, E. M., & Zhao, X. (2015) · Frontiers in Genetics · doi:10.3389/fgene.2015.00302 · Cited by 124 · see citing works
Billerey, C., Boussaha, M., Esquerré, D., Rebours, E., Djari, A., Meersseman, C., Klopp, C., Gautheret, D., & Rocha, D. (2014) · BMC Genomics · doi:10.1186/1471-2164-15-499 · Cited by 122 · see citing works
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Kim, J., Farré, M., Auvil, L. S., Capitanu, B., Larkin, D. M., Ma, J., & Lewin, H. A. (2017) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1702012114 · Cited by 121 · see citing works
Self-citation
- Authors
- The Bovine Genome Sequencing and Analysis Consortium, Elsik, C. G., Tellam, R. L., Worley, K. C., Gibbs, R. A., Muzny, D. M., Weinstock, G. M., Adelson, D. L., Eichler, E. E., Elnitski, L., Guigó, R., Hamernik, D. L., Kappes, S. M., Lewin, H. A., Lynn, D. J., Nicholas, F. W., Reymond, A., Rijnkels, M., Skow, L. C., Zdobnov, E. M., Schook, L., Womack, J., Alioto, T., Antonarakis, S. E., Astashyn, A., Chapple, C. E., Chen, H.-C., Chrast, J., Câmara, F., Ermolaeva, O., Henrichsen, C. N., Hlavina, W., Kapustin, Y., Kiryutin, B., Kitts, P., Kokocinski, F., Landrum, M., Maglott, D., Pruitt, K., Sapojnikov, V., Searle, S. M., Solovyev, V., Souvorov, A., Ucla, C., Wyss, C., Anzola, J. M., Gerlach, D., Elhaik, E., Graur, D., Reese, J. T., Edgar, R. C., McEwan, J. C., Payne, G. M., Raison, J. M., Junier, T., Kriventseva, E. V., Eyras, E., Plass, M., Donthu, R., Larkin, D. M., Reecy, J., Yang, M. Q., Chen, L., Cheng, Z., Chitko-McKown, C. G., Liu, G. E., Matukumalli, L. K., Song, J., Zhu, B., Bradley, D. G., Brinkman, F. S. L., Lau, L. P. L., Whiteside, M. D., Walker, A., Wheeler, T. T., Casey, T., German, J. B., Lemay, D. G., Maqbool, N. J., Molenaar, A. J., Seo, S., Stothard, P., Baldwin, C. L., Baxter, R., Brinkmeyer-Langford, C. L., Brown, W. C., Childers, C. P., Connelley, T., Ellis, S. A., Fritz, K., Glass, E. J., Herzig, C. T. A., Iivanainen, A., Lahmers, K. K., Bennett, A. K., Dickens, C. M., Gilbert, J. G. R., Hagen, D. E., Salih, H., Aerts, J., Caetano, A. R., Dalrymple, B., Garcia, J. F., Gill, C. A., Hiendleder, S. G., Memili, E., Spurlock, D., Williams, J. L., Alexander, L., Brownstein, M. J., Guan, L., Holt, R. A., Jones, S. J. M., Marra, M. A., Moore, R., Moore, S. S., Roberts, A., Taniguchi, M., Waterman, R. C., Chacko, J., Chandrabose, M. M., Cree, A., Dao, M. D., Dinh, H. H., Gabisi, R. A., Hines, S., Hume, J., Jhangiani, S. N., Joshi, V., Kovar, C. L., Lewis, L. R., Liu, Y.-S., Lopez, J., Morgan, M. B., Nguyen, N. B., Okwuonu, G. O., Ruiz, S. J., Santibanez, J., Wright, R. A., Buhay, C., Ding, Y., Dugan-Rocha, S., Herdandez, J., Holder, M., Sabo, A., Egan, A., Goodell, J., Wilczek-Boney, K., Fowler, G. R., Hitchens, M. E., Lozado, R. J., Moen, C., Steffen, D., Warren, J. T., Zhang, J., Chiu, R., Schein, J. E., Durbin, K. J., Havlak, P., Jiang, H., Liu, Y., Qin, X., Ren, Y., Shen, Y., Song, H., Bell, S. N., Davis, C., Johnson, A. J., Lee, S., Nazareth, L. V., Patel, B. M., Pu, L.-L., Vattathil, S., Williams, R. L., Curry, S., Hamilton, C., Sodergren, E., Wheeler, D. A., Barris, W., Bennett, G. L., Eggen, A., Green, R. D., Harhay, G. P., Hobbs, M., Jann, O., Keele, J. W., Kent, M. P., Lien, S., McKay, S. D., McWilliam, S., Ratnakumar, A., Schnabel, R. D., Smith, T., Snelling, W. M., Sonstegard, T. S., Stone, R. T., Sugimoto, Y., Takasuga, A., Taylor, J. F., Van Tassell, C. P., MacNeil, M. D., Abatepaulo, A. R. R., Abbey, C. A., Ahola, V., Almeida, I. G., Amadio, A. F., Anatriello, E., Bahadue, S. M., Biase, F. H., Boldt, C. R., Carroll, J. A., Carvalho, W. A., Cervelatti, E. P., Chacko, E., Chapin, J. E., Cheng, Y., Choi, J., Colley, A. J., de Campos, T. A., De Donato, M., Santos, I. K. F. D. M., de Oliveira, C. J. F., Deobald, H., Devinoy, E., Donohue, K. E., Dovc, P., Eberlein, A., Fitzsimmons, C. J., Franzin, A. M., Garcia, G. R., Genini, S., Gladney, C. J., Grant, J. R., Greaser, M. L., Green, J. A., Hadsell, D. L., Hakimov, H. A., Halgren, R., Harrow, J. L., Hart, E. A., Hastings, N., Hernandez, M., Hu, Z.-L., Ingham, A., Iso-Touru, T., Jamis, C., Jensen, K., Kapetis, D., Kerr, T., Khalil, S. S., Khatib, H., Kolbehdari, D., Kumar, C. G., Kumar, D., Leach, R., Lee, J. C.-M., Li, C., Logan, K. M., Malinverni, R., Marques, E., Martin, W. F., Martins, N. F., Maruyama, S. R., Mazza, R., McLean, K. L., Medrano, J. F., Moreno, B. T., Moré, D. D., Muntean, C. T., Nandakumar, H. P., Nogueira, M. F. G., Olsaker, I., Pant, S. D., Panzitta, F., Pastor, R. C. P., Poli, M. A., Poslusny, N., Rachagani, S., Ranganathan, S., Razpet, A., Riggs, P. K., Rincon, G., Rodriguez-Osorio, N., Rodriguez-Zas, S. L., Romero, N. E., Rosenwald, A., Sando, L., Schmutz, S. M., Shen, L., Sherman, L., Southey, B. R., Lutzow, Y. S., Sweedler, J. V., Tammen, I., Telugu, B. P. V. L., Urbanski, J. M., Utsunomiya, Y. T., Verschoor, C. P., Waardenberg, A. J., Wang, Z., Ward, R., Weikard, R., Welsh, T. H., White, S. N., Wilming, L. G., Wunderlich, K. R., Yang, J., & Zhao, F.-Q.
- Affiliations
- Baylor College of Medicine (US)
- Corresponding author
- Elsik, Christine G.
- Tellam, Ross L.
- Worley, Kim C.
- ORCID
- Elsik, Christine G.
- Tellam, Ross L.
- Worley, Kim C.
- Gibbs, Richard A.
- Muzny, Donna M.
- Weinstock, George M.
- Adelson, David L.
- Eichler, Evan E.
- Elnitski, Laura
- Lewin, Harris A.
- Lynn, David J.
- Nicholas, Frank W.
- Reymond, Alexandre
- Rijnkels, Monique
- Skow, Loren C.
- Zdobnov, Evgeny M.
- Schook, Lawrence
- Alioto, Tyler
- Antonarakis, Stylianos E.
- Hlavina, Wratko
- Kokocinski, Felix
- Landrum, Melissa
- Maglott, Donna
- Pruitt, Kim
- Solovyev, Victor
- Anzola, Juan M.
- Gerlach, Daniel
- Elhaik, Eran
- Reese, Justin T.
- Edgar, Robert C.
- McEwan, John C.
- Raison, Joy M.
- Junier, Thomas
- Kriventseva, Evgenia V.
- Eyras, Eduardo
- Plass, Mireya
- Larkin, Denis M.
- Reecy, James
- Chen, Lin
- Chitko-McKown, Carol G.
- Liu, George E.
- Song, Jiuzhou
- Zhu, Bin
- Bradley, Daniel G.
- Brinkman, Fiona S.L.
- Lau, Lilian P.L.
- Wheeler, Thomas T.
- Casey, Theresa
- German, J. Bruce
- Lemay, Danielle G.
- Maqbool, Nauman J.
- Molenaar, Adrian J.
- Seo, Seongwon
- Stothard, Paul
- Baldwin, Cynthia L.
- Childers, Christopher P.
- Connelley, Timothy
- Glass, Elizabeth J.
- Iivanainen, Antti
- Lahmers, Kevin K.
- Dickens, C. Michael
- Gilbert, James G.R.
- Hagen, Darren E.
- Aerts, Jan
- Caetano, Alexandre R.
- Dalrymple, Brian
- Gill, Clare A.
- Hiendleder, Stefan G.
- Williams, John L.
- Holt, Robert A.
- Jones, Steven J.M.
- Marra, Marco A.
- Moore, Richard
- Moore, Stephen S.
- Taniguchi, Masaaki
- Waterman, Richard C.
- Dinh, Huyen H.
- Jhangiani, Shalini N.
- Morgan, Margaret B.
- Nguyen, Ngoc Bich
- Ding, Yan
- Sabo, Aniko
- Steffen, David
- Zhang, Jingkun
- Chiu, Readman
- Liu, Yue
- Qin, Xiang
- Shen, Yufeng
- Vattathil, Selina
- Sodergren, Erica
- Wheeler, David A.
- Bennett, Gary L.
- Harhay, Gregory P.
- Hobbs, Matthew
- Keele, John W.
- Kent, Matthew P.
- Lien, Sigbjørn
- McKay, Stephanie D.
- McWilliam, Sean
- Ratnakumar, Abhirami
- Schnabel, Robert D.
- Snelling, Warren M.
- Sonstegard, Tad S.
- Taylor, Jeremy F.
- MacNeil, Michael D.
- Abbey, Colette A.
- Ahola, Virpi
- Almeida, Iassudara G.
- Biase, Fernando H.
- Carvalho, Wanessa A.
- Cheng, Ye
- Santos, Isabel K.F. de Miranda
- Fitzsimmons, Carolyn J.
- Greaser, Marion L.
- Green, Jonathan A.
- Hadsell, Darryl L.
- Harrow, Jennifer L.
- Hu, Zhi-Liang
- Ingham, Aaron
- Jensen, Kirsty
- Kapetis, Dimos
- Khatib, Hasan
- Kumar, Dinesh
- Lee, Justin C-M
- Li, Changxi
- Malinverni, Roberto
- Martin, William F.
- Martins, Natalia F.
- Maruyama, Sandra R.
- Medrano, Juan F.
- Moré, Daniela D.
- Nogueira, Marcelo F.G.
- Olsaker, Ingrid
- Pant, Sameer D.
- Rachagani, Satyanarayana
- Ranganathan, Shoba
- Riggs, Penny K.
- Rosenwald, Anne
- Shen, Libing
- Southey, Bruce R.
- Sweedler, Jonathan V.
- Tammen, Imke
- Telugu, Bhanu Prakash V.L.
- Utsunomiya, Yuri T.
- Verschoor, Chris P.
- Waardenberg, Ashley J.
- Wang, Zhiquan
- Weikard, Rosemarie
- Welsh, Thomas H.
- White, Stephen N.
- Wilming, Laurens G.
- Zhao, Feng-Qi
- Venue
- Science
- Published
- 2009-04-24
- Volume
- 324
- Issue
- 5926
- Pages
- 522-528
- ISSN
- 0036-8075 (ISSN-L)
- 1095-9203
- PMC
- PMC2943200
- OpenAlex
- W2154380613
- Cited by
- 1,287
- References
- 31
- Citations by year
- 2026: 23 · 2025: 48 · 2024: 41 · 2023: 47 · 2022: 56 · 2021: 73 · 2020: 80 · 2019: 79 · 2018: 60 · 2017: 60 · 2016: 67 · 2015: 90 · 2014: 81 · 2013: 96 · 2012: 122
- FWCI
- 75.07
- Type
- journal article
- Language
- en
- Open access
- green
- www.ncbi.nlm.nih.gov
- Locations
- Science (publishedVersion)
- PubMed (publishedVersion)
- Scientific Electronic Library Online (São Paulo Research Foundation, Latin American and Caribbean Center on Health Sciences Information, Conselho Nacional de Desenvolvimento Científico e Tecnológico) (publishedVersion)
- PubMed Central (acceptedVersion)
- ResearchOnline at James Cook University (James Cook University) (submittedVersion)
- UVaDOC UVaDOC University of Valladolid Documentary Repository (University of Valladolid) (submittedVersion, other-oa)
- National University of Singapore (submittedVersion)
- ScholarWorks@UMassAmherst (University of Massachusetts Amherst) (submittedVersion, cc-by-nc-nd)
- HAL (submittedVersion)
- Acervo Digital da Universidade Estadual Paulista (Universidade Estadual Paulista) (submittedVersion)
- Adelaide Research & Scholarship (AR&S) (University of Adelaide) (submittedVersion)
- Document Server@UHasselt (UHasselt) (submittedVersion)
- TECNALIA Publications (Fundación TECNALIA Research & Innovation) (submittedVersion)
- Hispana (submittedVersion, other-oa)
- IRIS (submittedVersion)
- Jukuri (Natural Resources Institute Finland (Luke)) (submittedVersion)
- Lirias (submittedVersion)
- Lund University Publications (Lund University) (submittedVersion)
- ANU Open Research (Australian National University) (submittedVersion)
- Edinburgh Research Explorer (University of Edinburgh) (submittedVersion, other-oa)
- UNESP Institutional Repository (São Paulo State University) (submittedVersion)
- Griffith Research Online (submittedVersion)
- CONICET Digital (CONICET) (submittedVersion, cc-by-nc-sa)
- SERVAL (Université de Lausanne) (submittedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion)
- Archive ouverte UNIGE (University of Geneva) (submittedVersion, cc-by)
- Funders
- Wellcome Trust (062023, 077198)
- Biotechnology and Biological Sciences Research Council (BB/D524040/2, BBS/B/13438, BBS/B/13446)
- National Institute on Drug Abuse (P30DA018310)
- National Human Genome Research Institute (U54HG003273)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Genetics › Genetic and phenotypic traits in livestock
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Genomics and Phylogenetic Studies
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Chromosomal and Genetic Variations
- Keywords
- cattle genome, taurine cattle, ruminant evolution, mammalian evolution, orthologs, segmental duplication, repetitive elements, gene deletion, livestock genetic improvement, meat and milk production
- MeSH terms
- Animals, Animals, Domestic, Cattle, Biological Evolution, Female, Humans, Male, Molecular Sequence Data, Proteins, Species Specificity, Genetic Variation, Genome, Alternative Splicing, Sequence Analysis, DNA, Evolution, Molecular, Synteny, MicroRNAs
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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