Combined transcriptomic and metabolomic analyses of high temperature stress response of quinoa seedlings
Open accessAbstract
BACKGROUND: Quinoa (Chenopodium quinoa Willd.) originates in high altitude areas, such as the Andes, and has some inherent characteristics of cold, drought, and salinity tolerance, but is sensitive to high temperature. RESULTS: To gain insight into the response mechanism of quinoa to high temperature stress, we conducted an extensive targeted metabolomic study of two cultivars, Dianli-3101 and Dianli-3051, along with a combined transcriptome analysis. A total of 794 metabolites and 54,200 genes were detected, in which the genes related to photosynthesis were found down-regulated at high temperatures, and two metabolites, lipids and flavonoids, showed the largest changes in differential accumulation. Further analysis of the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway and transcription factors revealed that quinoa inhibits photosynthesis at high temperatures, and the possible strategies being used for high temperature stress management are regulation of heat stress transcription factors (HSFs) to obtain heat tolerance, and regulation of purine metabolism to enhance stress signals for rapid response to high temperature stress. The tolerant genotype could have an enhanced response through lower purine levels. The induction of the stress response could be mediated by HSF transcription factors. The results of this study may provide theoretical references for understanding the response mechanism of quinoa to high temperature stress, and for screening potential high temperature tolerant target genes and high temperature tolerant strains. CONCLUSIONS: These findings reveal the regulation of the transcription factor family HSF and the purinergic pathway in response to high temperature stress to improve quinoa varieties with high temperature tolerance.
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Overexpression of transcription factor HsfA2 promotes expression of downstream heat-responsive genes, making it essential for developing heat stress tolerance.
“Additionally, the transcription factor HsfA2 has been discovered; its overexpression promotes the expression of downstream heat-responsive genes, making it essential for developing heat stress tolerance (Xie et al., 2023; Xie et al., 2021).”
From Emerging applications of gene editing technologies for the development of climate-resilient crops (2025) · cites this paper as Xie et al., 2023
The Background says HSFs activate heat-response genes, and the Discussion links HSFs to heat tolerance and reports a positive regulatory role for the related wheat factor TaHsfA2e-5D. Neither section reports HsfA2 overexpression increasing downstream gene expression or establishes that HsfA2 is essential for developing heat tolerance. No page numbers are available in our copy. (LLM, conf=0.86)
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- Authors
- Xie, H., Zhang, P., Jiang, C., Wang, Q., Guo, Y., Zhang, X., Huang, T., Liu, J., Li, L., Li, H., Wang, H., & Qin, P.
- Affiliations
- Yunnan Agricultural University (CN)
- Corresponding author
- Qin, Peng
- Venue
- BMC Plant Biology
- Published
- 2023-06-01
- Volume
- 23
- Issue
- 1
- Pages
- 292-292
- ISSN
- 1471-2229 (ISSN-L)
- PMC
- PMC10234003
- OpenAlex
- W4379055034
- Cited by
- 39
- References
- 53
- Citations by year
- 2026: 11 · 2025: 17 · 2024: 10 · 2023: 1
- FWCI
- 6.13
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- BMC Plant Biology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- the Yunnan Expert Workstation (202205AF150001)
- Xingdian talent support plan
- Topics
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Stress Responses and Tolerance
- Life Sciences › Agricultural and Biological Sciences › Food Science › Seed and Plant Biochemistry
- Life Sciences › Agricultural and Biological Sciences › Plant Science › Plant Molecular Biology Research
- Keywords
- quinoa, heat stress, heat stress response, heat shock transcription factor, purine metabolism, photosynthesis downregulation, flavonoids, lipid metabolism, transcriptome, metabolome, cultivar comparison, heat tolerance, stress tolerance breeding
- MeSH terms
- Temperature, Transcription Factors, Gene Expression Profiling, Chenopodium quinoa, Seedlings, Transcriptome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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