Interconnectivity between molecular subtypes and tumor stage in colorectal cancer
Open accessPublished version of a preprint
Abstract
Background: There are profound individual differences in clinical outcomes between colorectal cancers (CRCs) presenting with identical stage of disease. Molecular stratification, in conjunction with the traditional TNM staging, is a promising way to predict patient outcomes. We investigated the interconnectivity between tumor stage and tumor biology reflected by the Consensus Molecular Subtypes (CMSs) in CRC, and explored the possible value of these insights in patients with stage II colon cancer. Methods: We performed a retrospective analysis using clinical records and gene expression profiling in a meta-cohort of 1040 CRC patients. The interconnectivity of tumor biology and disease stage was assessed by investigating the association between CMSs and TNM classification. In order to validate the clinical applicability of our findings we employed a meta-cohort of 197 stage II colon cancers. Results: CMS4 was significantly more prevalent in advanced stages of disease (stage I 9.8% versus stage IV 38.5%, p < 0.001). The observed differential gene expression between cancer stages is at least partly explained by the biological differences as reflected by CMS subtypes. Gene signatures for stage III-IV and CMS4 were highly correlated (r = 0.77, p < 0.001). CMS4 cancers showed an increased progression rate to more advanced stages (CMS4 compared to CMS2: 1.25, 95% CI: 1.08–1.46). Patients with a CMS4 cancer had worse survival in the high-risk stage II tumors compared to the total stage II cohort (5-year DFS 41.7% versus 100.0%, p = 0.008). Conclusions: Considerable interconnectivity between tumor biology and tumor stage in CRC exists. This implies that the TNM stage, in addition to the stage of progression, might also reflect distinct biological disease entities. These insights can potentially be utilized to optimize identification of high-risk stage II colon cancers.
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Claims other papers make about this one
Each is checked against this paper’s own text: does it say what the citing paper says it does?
The proportion of CMS4 cases increases with disease stage, ranging from 10% in stage 1 to 38.5% in stage 4 patients.
“the proportion of CMS4 cases was shown to gradually increase with stage, ranging from 10% in stage 1 to 38.5% in stage 4 patients (16).”
From Clinical Challenges of Consensus Molecular Subtype CMS4 Colon Cancer in the Era of Precision Medicine (2024) · cites this paper as [16]
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Cites
Bray, F., Ferlay, J., Soerjomataram, I., Siegel, R. L., Torre, L. A., & Jemal, A. (2018) · CA: A Cancer Journal for Clinicians · doi:10.3322/caac.21492 · Cited by 84,109 · see citing works
PD-1 Blockade in Tumors with Mismatch-Repair Deficiency
Le, D. T., Uram, J. N., Wang, H., Bartlett, B. R., Kemberling, H., Eyring, A. D., Skora, A. D., Luber, B. S., Azad, N. S., Laheru, D., et al. (2015) · New England Journal of Medicine · doi:10.1056/nejmoa1500596 · Cited by 9,377 · see citing works
The consensus molecular subtypes of colorectal cancer
Guinney, J., Dienstmann, R., Wang, X., de Reyniès, A., Schlicker, A., Soneson, C., Marisa, L., Roepman, P., Nyamundanda, G., Angelino, P., et al. (2015) · Nature Medicine · doi:10.1038/nm.3967 · Cited by 5,170 · see citing works
Self-citationSargent, D. J., Marsoni, S., Monges, G., Thibodeau, S. N., Labianca, R., Hamilton, S. R., French, A. J., Kabat, B., Foster, N. R., Torri, V., et al. (2010) · Journal of Clinical Oncology · doi:10.1200/jco.2009.27.1825 · Cited by 1,623 · see citing works
Marisa, L., de Reyniès, A., Duval, A., Selves, J., Gaub, M. P., Vescovo, L., Etienne-Grimaldi, M.-C., Schiappa, R., Guenot, D., Ayadi, M., et al. (2013) · PLoS Medicine · doi:10.1371/journal.pmed.1001453 · Cited by 1,507 · see citing works
Benson, A. B., Schrag, D., Somerfield, M. R., Cohen, A. M., Figueredo, A. T., Flynn, P. J., Krzyzanowska, M. K., Maroun, J. A., McAllister, P. K., Cutsem, E. V., et al. (2004) · Journal of Clinical Oncology · doi:10.1200/jco.2004.05.063 · Cited by 1,430 · see citing works
De Sousa E Melo, F., Wang, X., Jansen, M., Fessler, E., Trinh, A., de Rooij, L. P. M. H., de Jong, J. H., de Boer, O. J., van Leersum, R., Bijlsma, M. F., et al. (2013) · Nature Medicine · doi:10.1038/nm.3174 · Cited by 771 · see citing works
Self-citationAndré, T., de Gramont, A., Vernerey, D., Chibaudel, B., Bonnetain, F., Tijeras-Raballand, A., Scriva, A., Hickish, T., Tabernero, J., Van Laethem, J. L., et al. (2015) · Journal of Clinical Oncology · doi:10.1200/jco.2015.63.4238 · Cited by 683 · see citing works
Origins of lymphatic and distant metastases in human colorectal cancer
Naxerova, K., Reiter, J. G., Brachtel, E. F., Lennerz, J. K., van de Wetering, M., Rowan, A., Cai, T., Clevers, H. C., Swanton, C., Nowak, M. A., et al. (2017) · Science · doi:10.1126/science.aai8515 · Cited by 485 · see citing works
Adjuvant Chemotherapy for Stage II Colon Cancer With Poor Prognostic Features
O’Connor, E. S., Greenblatt, D. Y., LoConte, N. K., Gangnon, R. E., Liou, J., Heise, C. P., & Smith, M. A. (2011) · Journal of Clinical Oncology · doi:10.1200/jco.2010.34.3426 · Cited by 453 · see citing works
Roepman, P., Schlicker, A., Tabernero, J. M., Majewski, I. J., Tian, S., Moreno, V. R., Snel, M. H. J., Chresta, C. M., Rosenberg, R., Nitsche, U., et al. (2013) · International Journal of Cancer · doi:10.1002/ijc.28387 · Cited by 341 · see citing works
Guetz, G. D., Schischmanoff, P. O., Nicolas, P., Perret, G. Y., Morère, J., & Uzzan, B. (2009) · European Journal of Cancer · doi:10.1016/j.ejca.2009.04.018 · Cited by 291 · see citing works
Lenz, H.-J., Ou, F.-S., Venook, A. P., Hochster, H. S., Niedzwiecki, D., Goldberg, R. M., Mayer, R. J., Bertagnolli, M. M., Blanke, C. D., Zemla, T., et al. (2019) · Journal of Clinical Oncology · doi:10.1200/jco.18.02258 · Cited by 246 · see citing works
Dienstmann, R., Mason, M. J., Sinicrope, F. A., Phipps, A. I., Tejpar, S., Nesbakken, A., Danielsen, S. A., Sveen, A., Buchanan, D. D., Clendenning, M., et al. (2017) · Annals of Oncology · doi:10.1093/annonc/mdx052 · Cited by 240 · see citing works
Trinh, A., Trumpi, K., De Sousa E Melo, F., Wang, X., de Jong, J. H., Fessler, E., Kuppen, P. J. K., Reimers, M. S., Swets, M., Koopman, M., et al. (2017) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-16-0680 · Cited by 180 · see citing works
Self-citationSong, N., Pogue–Geile, K. L., Gavin, P. G., Yothers, G., Kim, S. R., Johnson, N. L., Lipchik, C., Allegra, C. J., Petrelli, N. J., O’Connell, M. J., et al. (2016) · JAMA Oncology · doi:10.1001/jamaoncol.2016.2314 · Cited by 172 · see citing works
Kumar, A., Kennecke, H. F., Renouf, D. J., et al. (2014) · Cancer · doi:10.1002/cncr.29072 · Cited by 164 · see citing works
Mekenkamp, L. J., Koopman, M., Teerenstra, S., van Krieken, J. H., Mol, L., Nagtegaal, I. D., & Punt, C. J. A. (2010) · British Journal of Cancer · doi:10.1038/sj.bjc.6605737 · Cited by 162 · see citing works
Self-citationA Systematic Analysis of Oncogenic Gene Fusions in Primary Colon Cancer
Kloosterman, W. P., van den Braak, R. R. J. C., Pieterse, M., van Roosmalen, M. J., Sieuwerts, A. M., Stangl, C., Brunekreef, R., Lalmahomed, Z. S., Ooft, S., van Galen, A., et al. (2017) · Cancer Research · doi:10.1158/0008-5472.can-16-3563 · Cited by 94 · see citing works
Self-citationTime of Metastasis and Outcome in Colorectal Cancer
Rahbari, N. N., Carr, P. R., Jansen, L., Chang-Claude, J. C., Weitz, J., Hoffmeister, M., & Brenner, H. (2017) · Annals of Surgery · doi:10.1097/sla.0000000000002564 · Cited by 44 · see citing works
van der Pool, A. E. M., Lalmahomed, Z. S., Özbay, Y., de Wilt, J. H. W., Eggermont, A. M. M., Jzermans, J. N. M. I., & Verhoef, C. K. (2009) · Colorectal Disease · doi:10.1111/j.1463-1318.2009.02135.x · Cited by 43 · see citing works
Pathways of parallel progression
Ghajar, C. M., & Bissell, M. J. (2016) · Nature · doi:10.1038/nature21104 · Cited by 34 · see citing works
Jalaeikhoo, H., Zokaasadi, M., Khajeh-Mehrizi, A., et al. (2019) · Journal of Research in Medical Sciences · doi:10.4103/jrms.jrms_106_18 · Cited by 24 · see citing works
What is the role of lymph node metastases in the progression of colorectal cancer?
Nagtegaal, I. D., & Schmoll, H. (2017) · Nature Reviews Gastroenterology & Hepatology · doi:10.1038/nrgastro.2017.122 · Cited by 23 · see citing works
Çakar, B., Varol, U., Junushova, B., et al. (2013) · PubMed · Cited by 9 · see citing works
Flagged first, then by citations
Cited by
Sorted by citations
ten Hoorn, S., de Back, T. R., Sommeijer, D. W., & Vermeulen, L. (2022) · JNCI: Journal of the National Cancer Institute · doi:10.1093/jnci/djab106 · Cited by 203 · see citing works
Self-citationHLA class I loss in colorectal cancer: implications for immune escape and immunotherapy
Anderson, P., Aptsiauri, N., Ruiz-Cabello, F., & Garrido, F. (2021) · Cellular & Molecular Immunology · doi:10.1038/s41423-021-00634-7 · Cited by 107 · see citing works
Mouillet-Richard, S., Cazelles, A., Sroussi, M., Gallois, C., Taieb, J., & Laurent-Puig, P. (2024) · Clinical Cancer Research · doi:10.1158/1078-0432.ccr-23-3964 · Cited by 43 · see citing works
YAP/TAZ signalling in colorectal cancer: lessons from consensus molecular subtypes
Mouillet-Richard, S., & Laurent-Puig, P. (2020) · Cancers · doi:10.3390/cancers12113160 · Cited by 40 · see citing works
Prognostic value of the PrP <sup>C</sup> -ILK-IDO1 axis in the mesenchymal colorectal cancer subtype
Ghazi, A., Le Corre, D., Pilati, C., Taieb, J., Aparicio, T., Didelot, A., Dedhar, S., Mulot, C., Le Malicot, K., Djouadi, F., et al. (2021) · OncoImmunology · doi:10.1080/2162402x.2021.1940674 · Cited by 21 · see citing works
- Authors
- Coebergh van den Braak, R. R. J., ten Hoorn, S., Sieuwerts, A. M., Tuynman, J. B., Smid, M., Wilting, S. M., Martens, J. W. M., Punt, C. J. A., Foekens, J. A., Medema, J. P., IJzermans, J. N. M., & Vermeulen, L.
- Affiliations
- Erasmus MC (NL)
- Amsterdam University Medical Centers (NL)
- University Medical Center Utrecht (NL)
- Corresponding author
- Vermeulen, L.
- ORCID
- Venue
- BMC Cancer
- Published
- 2020-09-04
- Volume
- 20
- Issue
- 1
- Pages
- 850-850
- ISSN
- 1471-2407 (ISSN-L)
- PMC
- PMC7473811
- OpenAlex
- W3083088281
- Cited by
- 27
- References
- 25
- Citations by year
- 2026: 4 · 2024: 7 · 2022: 2 · 2021: 13 · 2020: 1
- FWCI
- 1.44
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Locations
- BMC Cancer (publishedVersion, cc-by)
- Research Square (acceptedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Amsterdam UMC (VU Amsterdam) - Institutional Repository (publishedVersion, other-oa)
- EUR Research Repository (Erasmus University Rotterdam) (publishedVersion, other-oa)
- Pure Amsterdam UMC (acceptedVersion, cc-by)
- Data Archiving and Networked Services (DANS) (submittedVersion, other-oa)
- EUR Research Repository (Erasmus University Rotterdam) (submittedVersion, other-oa)
- RePub (Erasmus University Rotterdam) (submittedVersion, other-oa)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- New York Stem Cell Foundation (NYSCF-I-R43)
- KWF Kankerbestrijding ((UVA2014-7245 and UVA2013-6331)
- Worldwide Cancer Research (14-1164)
- Maag Lever Darm Stichting (MLDS-CDG 14-03)
- H2020 European Research Council (ERG-StG 638193)
- ZonMw (Vidi 016.156.308)
- Fonds NutsOhra (0903-011)
- Topics
- Health Sciences › Medicine › Oncology › Colorectal Cancer Treatments and Studies
- Health Sciences › Medicine › Pathology and Forensic Medicine › Genetic factors in colorectal cancer
- Health Sciences › Medicine › Oncology › Colorectal Cancer Surgical Treatments
- Keywords
- colorectal cancer, consensus molecular subtypes, tumor stage, TNM staging, stage II colon cancer, CMS4, disease progression, gene expression signatures, molecular stratification, disease-free survival
- MeSH terms
- Aged, Colonic Neoplasms, Female, Humans, Male, Middle Aged, Neoplasm Staging, Prognosis, Retrospective Studies, Risk, Gene Expression Regulation, Neoplastic, Disease-Free Survival, Gene Expression Profiling, Kaplan-Meier Estimate, Microsatellite Instability, Transcriptome
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review