The DOI matches its Crossref record; 334 of the 334 references it cites were found in a registry or an index.
Phytochrome Signaling Mechanisms
Open accessAbstract
Phytochromes are red (R)/far-red (FR) light photoreceptors that play fundamental roles in photoperception of the light environment and the subsequent adaptation of plant growth and development. There are five distinct phytochromes in Arabidopsis thaliana, designated phytochrome A (phyA) to phyE. phyA is light-labile and is the primary photoreceptor responsible for mediating photomorphogenic responses in FR light, whereas phyB-phyE are light stable, and phyB is the predominant phytochrome regulating de-etiolation responses in R light. Phytochromes are synthesized in the cytosol in their inactive Pr form. Upon light irradiation, phytochromes are converted to the biologically active Pfr form, and translocate into the nucleus. phyB can enter the nucleus by itself in response to R light, whereas phyA nuclear import depends on two small plant-specific proteins FAR-RED ELONGATED HYPOCOTYL 1 (FHY1) and FHY1-LIKE (FHL). Phytochromes may function as light-regulated serine/threonine kinases, and can phosphorylate several substrates, including themselves in vitro. Phytochromes are phosphoproteins, and can be dephosphorylated by a few protein phosphatases. Photoactivated phytochromes rapidly change the expression of light-responsive genes by repressing the activity of CONSTITUTIVE PHOTOMORPHOGENIC 1 (COP1), an E3 ubiquitin ligase targeting several photomorphogenesis-promoting transcription factors for degradation, and by inducing rapid phosphorylation and degradation of Phytochrome-Interacting Factors (PIFs), a group of bHLH transcription factors repressing photomorphogenesis. Phytochromes are targeted by COP1 for degradation via the ubiquitin/26S proteasome pathway.
Overview
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Integrity signals
Registry
Cites
Statistics
Verification
Claims the paper makes
The claims and statistics of this paper haven’t been checked yet.
Run the check — free, no account needed. It reads the open-access text and checks the sources it cites.
Self-check
Percentages, sums and reported differences re-computed from the paper’s own numbers.
The self-check needs the paper’s full text.
Citations
Cites
Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
Initiative, T. A. G. (2000) · Nature · doi:10.1038/35048692 · Cited by 9,301
Orchestrated Transcription of Key Pathways in Arabidopsis by the Circadian Clock
Harmer, S. L., Hogenesch, J. B., Straume, M., Chang, H.-S., Han, B., Zhu, T., Wang, X., Kreps, J. A., & Kay, S. A. (2000) · Science · doi:10.1126/science.290.5499.2110 · Cited by 1,640
Putterill, J., Robson, F., Lee, K., Simon, R., & Coupland, G. (1995) · Cell · doi:10.1016/0092-8674(95)90288-0 · Cited by 1,467
CONSTANS mediates between the circadian clock and the control of flowering in Arabidopsis
Suárez-López, P., Wheatley, K., Robson, F., Onouchi, H., Valverde, F., & Coupland, G. (2001) · Nature · doi:10.1038/35074138 · Cited by 1,463
Targeted destabilization of HY5 during light-regulated development of Arabidopsis
Osterlund, M. T., Hardtke, C. S., Wei, N., & Deng, X. W. (2000) · Nature · doi:10.1038/35013076 · Cited by 1,359
The Arabidopsis Basic/Helix-Loop-Helix Transcription Factor Family[W]
Toledo-Ortiz, G., Huq, E., & Quail, P. H. (2003) · The Plant Cell · doi:10.1105/tpc.013839 · Cited by 1,328
A molecular framework for light and gibberellin control of cell elongation
de Lucas, M., Davière, J.-M., Rodríguez-Falcón, M., Pontin, M., Iglesias-Pedraz, J. M., Lorrain, S., Fankhauser, C., Blázquez, M. A., Titarenko, E., & Prat, S. (2008) · Nature · doi:10.1038/nature06520 · Cited by 1,319
Photoreceptor Regulation of CONSTANS Protein in Photoperiodic Flowering
Valverde, F., Mouradov, A., Soppe, W., Ravenscroft, D., Samach, A., & Coupland, G. (2004) · Science · doi:10.1126/science.1091761 · Cited by 1,309
Perception of UV-B by the Arabidopsis UVR8 Protein
Rizzini, L., Favory, J.-J., Cloix, C., Faggionato, D., O’Hara, A., Kaiserli, E., Baumeister, R., Schäfer, E., Nagy, F., Jenkins, G. I., et al. (2011) · Science · doi:10.1126/science.1200660 · Cited by 1,134
Coordinated regulation of Arabidopsis thaliana development by light and gibberellins
Feng, S., Martinez, C., Gusmaroli, G., Wang, Y., Zhou, J., Wang, F., Chen, L., Yu, L., Iglesias-Pedraz, J. M., Kircher, S., et al. (2008) · Nature · doi:10.1038/nature06448 · Cited by 1,115
Research works printed but not linked: 63
- 10.1046/j.1365-313X.1997.11030421.x · doi:10.1046/j.1365-313x.1997.11030421.x
- Andel F., 1996, Biochemistry, 35, 15997, 10.1021/bi962175k · doi:10.1021/bi962175k
- Araki T., 1993, Plant J., 4, 801, 10.1046/j.1365-313X.1993.04050801.x · doi:10.1046/j.1365-313x.1993.04050801.x
- Bailey P.C., 2003, Plant Cell, 15, 2497, 10.1105/tpc.151140 · doi:10.1105/tpc.151140
- Ballesteros M.L., 2001, Genes Dev., 15, 2613, 10.1101/gad.915001 · doi:10.1101/gad.915001
- Barnes S.A., 1996, Plant J., 10, 1155, 10.1046/j.1365-313X.1996.10061155.x · doi:10.1046/j.1365-313x.1996.10061155.x
- Biermann B.J., 1994, Plant Physiol., 105, 243, 10.1104/pp.105.1.243 · doi:10.1104/pp.105.1.243
- Boylan M.T., 1996, Protoplasma, 195, 12, 10.1007/BF01279182 · doi:10.1007/bf01279182
- Bu Q., 2011, J. Biol. Chem., 286, 12066, 10.1074/jbc.M110.186882 · doi:10.1074/jbc.m110.186882
- Casal J.J., 2002, Plant Physiol., 129, 1127, 10.1104/pp.010977 · doi:10.1104/pp.010977
- 10.1104/pp.118.1.19 · doi:10.1104/pp.118.1.19
- 10.1093/jexbot/49.319.127 · doi:10.1093/jexbot/49.319.127
- Chen H., 2006, Plant Cell, 18, 1991, 10.1105/tpc.106.043224 · doi:10.1105/tpc.106.043224
- Chen M., 2003, Proc Natl. Acad. Sci. USA, 100, 14493, 10.1073/pnas.1935989100 · doi:10.1073/pnas.1935989100
- 10.1105/tpc.5.9.1081 · doi:10.1105/tpc.5.9.1081
- Fairchild C.D., 2000, Genes Dev., 14, 2377
- Garner W.W., 1920, J. Agric. Res., 18, 553
- Han Y.J., 2010, Plant Cell Physiol., 51, 596, 10.1093/pcp/pcq025 · doi:10.1093/pcp/pcq025
- 10.1104/pp.128.1.194 · doi:10.1104/pp.128.1.194
- Hirschfeld M., 1998, Genetics, 149, 523, 10.1093/genetics/149.2.523 · doi:10.1093/genetics/149.2.523
- 10.1105/tpc.12.7.1063 · doi:10.1105/tpc.12.7.1063
- Hoecker U., 1998, Plant Cell, 10, 19
- Hoecker U., 2001, J. Biol. Chem., 276, 38173, 10.1074/jbc.M103140200 · doi:10.1074/jbc.m103140200
- Jabben M., 1989, Plant Physiol., 90, 380, 10.1104/pp.90.2.380 · doi:10.1104/pp.90.2.380
- Jang I.C., 2005, Genes Dev., 19, 593, 10.1101/gad.1247205 · doi:10.1101/gad.1247205
- Jang I.C., 2007, Genes Dev., 21, 2100, 10.1101/gad.1568207 · doi:10.1101/gad.1568207
- 10.1126/science.285.5426.406 · doi:10.1126/science.285.5426.406
- Jordan E.T., 1996, Plant J., 9, 243, 10.1046/j.1365-313X.1996.09020243.x · doi:10.1046/j.1365-313x.1996.09020243.x
- Jordan E.T., 1997, Plant Physiol., 115, 693, 10.1104/pp.115.2.693 · doi:10.1104/pp.115.2.693
- Khanna R., 2003, Plant Physiol., 133, 1530, 10.1104/pp.103.030007 · doi:10.1104/pp.103.030007
- Kim I.S., 1989, Photochem. Photobiol., 49, 319, 10.1111/j.1751-1097.1989.tb04113.x · doi:10.1111/j.1751-1097.1989.tb04113.x
- 10.1105/tpc.104.023879 · doi:10.1105/tpc.104.023879
- 10.1046/j.1365-313X.1996.10040625.x · doi:10.1046/j.1365-313x.1996.10040625.x
- Lagarias J.C., 1980, J. Am. Chem. Soc., 102, 4821, 10.1021/ja00534a042 · doi:10.1021/ja00534a042
- 10.1073/pnas.94.22.11792 · doi:10.1073/pnas.94.22.11792
- 10.1021/bi970708z · doi:10.1021/bi970708z
- Laubinger S., 2003, Plant J., 35, 373, 10.1046/j.1365-313X.2003.01813.x · doi:10.1046/j.1365-313x.2003.01813.x
- Laubinger S., 2004, Plant Cell, 16, 2293, 10.1105/tpc.104.024216 · doi:10.1105/tpc.104.024216
- Li G., 2011, Nat. Cell. Biol., 13, 616, 10.1038/ncb2219 · doi:10.1038/ncb2219
- Lin R., 2008, Plant Physiol., 148, 981, 10.1104/pp.108.120436 · doi:10.1104/pp.108.120436
- Martin-Tryon E.L., 2007, Plant Physiol., 143, 473, 10.1104/pp.106.088757 · doi:10.1104/pp.106.088757
- Mateos J.L., 2006, J. Biol. Chem., 281, 34421, 10.1074/jbc.M603538200 · doi:10.1074/jbc.m603538200
- McMichael R.W., 1990, Biochemistry, 29, 3872, 10.1021/bi00468a011 · doi:10.1021/bi00468a011
- 10.1105/tpc.105.033464 · doi:10.1105/tpc.105.033464
- Nagatani A., 2010, Curr. Opin. Plant Biol., 13, 565, 10.1016/j.pbi.2010.07.002 · doi:10.1016/j.pbi.2010.07.002
- Nemhauser J., 2002, The Arabidopsis Book, 1, e0054, 10.1199/tab.0054 · doi:10.1199/tab.0054
- 10.1105/tpc.13.7.1639 · doi:10.1105/tpc.13.7.1639
- 10.1046/j.1365-313x.1998.00290.x · doi:10.1046/j.1365-313x.1998.00290.x
- Ouyang X., 2011, Plant Cell, 23, 2514, 10.1105/tpc.111.085126 · doi:10.1105/tpc.111.085126
- Phee B.K., 2008, Biochem J., 415, 247, 10.1042/BJ20071555 · doi:10.1042/bj20071555
- Quail P.H., 2011, Curr. Biol., 20, R504, 10.1016/j.cub.2010.04.014 · doi:10.1016/j.cub.2010.04.014
- Reed J.W., 2000, Plant Physiol., 122, 1149, 10.1104/pp.122.4.1149 · doi:10.1104/pp.122.4.1149
- 10.1021/bi980575x · doi:10.1021/bi980575x
- Saijo Y., 2003, Genes Dev., 17, 2642, 10.1101/gad.1122903 · doi:10.1101/gad.1122903
- Searle I., 2004, EMBO J., 23, 1217, 10.1038/sj.emboj.7600117 · doi:10.1038/sj.emboj.7600117
- Shen Y., 2005, Plant Physiol., 139, 1234, 10.1104/pp.105.067645 · doi:10.1104/pp.105.067645
- 10.1105/tpc.3.12.1263 · doi:10.1105/tpc.3.12.1263
- Speth V., 1986, Planta, 168, 299, 10.1007/BF00392353 · doi:10.1007/bf00392353
- Wagner D., 1996, Proc. Natl. Acad. Sci. USA, 93, 4011, 10.1073/pnas.93.9.4011 · doi:10.1073/pnas.93.9.4011
- Wang H., 2002, EMBO J., 21, 1339, 10.1093/emboj/21.6.1339 · doi:10.1093/emboj/21.6.1339
- Wong Y.S., 1989, Plant Physiol., 91, 709, 10.1104/pp.91.2.709 · doi:10.1104/pp.91.2.709
- Yang J., 2005, Plant Cell, 17, 804, 10.1105/tpc.104.030205 · doi:10.1105/tpc.104.030205
- Zhou Y.C., 2002, Plant Physiol., 128, 1098, 10.1104/pp.010811 · doi:10.1104/pp.010811
Cited by
Multiple pathways regulate shoot branching
Rameau, C., Bertheloot, J., Leduc, N., Andrieu, B., Foucher, F., & Sakr, S. (2015) · Frontiers in Plant Science · doi:10.3389/fpls.2014.00741 · Cited by 357
Park, Y., & Runkle, E. S. (2017) · Environmental and Experimental Botany · doi:10.1016/j.envexpbot.2016.12.013 · Cited by 292
Phototropins Promote Plant Growth in Response to Blue Light in Low Light Environments
Takemiya, A., Inoue, S.-I., Doi, M., Kinoshita, T., & Shimazaki, K.-I. (2005) · The Plant Cell · doi:10.1105/tpc.104.030049 · Cited by 279
BRANCHED1 Promotes Axillary Bud Dormancy in Response to Shade in Arabidopsis
González-Grandío, E., Poza-Carrión, C., Sorzano, C. O. S., & Cubas, P. (2013) · The Plant Cell · doi:10.1105/tpc.112.108480 · Cited by 272
Leaf Positioning of Arabidopsis in Response to Blue Light
Inoue, S.-I., Kinoshita, T., Takemiya, A., Doi, M., & Shimazaki, K.-I. (2008) · Molecular Plant · doi:10.1093/mp/ssm001 · Cited by 156
Metadata
- Authors
- Li, J., Li, G., Wang, H., & Wang Deng, X.
- Venue
- The Arabidopsis Book
- Publisher
- BioOne
- Published
- 2011-01
- Volume
- 9
- Pages
- e0148
- ISSN
- 1543-8120 (ISSN-L)
- OpenAlex
- W2152382014
- Cited by
- 561
- References
- 334
- FWCI
- 18.89
- Type
- journal article
- Language
- en
- Open access
- bronze
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
Are you an author, or do you see a problem with this page? Request a review
How to cite
Cite CoChat for the checks on this page, and the paper for its own findings.
- This page
- CoChat. (2026). Citation check: Phytochrome Signaling Mechanisms. https://app.cochat.ai/papers/10.1199/tab.0148
- The paper
- Li, J., Li, G., Wang, H., & Wang Deng, X. (2011). Phytochrome Signaling Mechanisms. The Arabidopsis Book. https://doi.org/10.1199/tab.0148
Data sources
Bibliographic data: Semantic Scholar, OpenAlex, Crossref.
Contains information from the Semantic Scholar Academic Graph Datasets, made available under the ODC Attribution License (ODC-BY 1.0).
Semantic Scholar’s data is described in: Kinney, R., et al. (2023). The Semantic Scholar Open Data Platform. arXiv:2301.10140.