Comprehensive genetic analysis of 182 unrelated families with congenital adrenal hyperplasia due to 21-hydroxylase deficiency
Open accessAbstract
Background: Genetic analysis is commonly performed in patients with congenital adrenal hyperplasia (CAH) due to 21-hydroxylase deficiency. Study Objective: The objective of the study was to describe comprehensive CYP21A2 mutation analysis in a large cohort of CAH patients. Methods: Targeted CYP21A2 mutation analysis was performed in 213 patients and 232 parents from 182 unrelated families. Complete exons of CYP21A2 were sequenced in patients in whom positive mutations were not identified by targeted mutation analysis. Copy number variation and deletions were determined using Southern blot analysis and PCR methods. Genotype was correlated with phenotype. Results: In our heterogeneous U.S. cohort, targeted CYP21A2 mutation analysis did not identify mutations on one allele in 19 probands (10.4%). Sequencing identified six novel mutations (p.Gln262fs, IVS8+1G>A, IVS9-1G>A, p.R408H, p.Gly424fs, p.R426P) and nine previously reported rare mutations. The majority of patients (79%) were compound heterozygotes and 69% of nonclassic (NC) patients were compound heterozygous for a classic and a NC mutation. Duplicated CYP21A2 haplotypes, de novo mutations and uniparental disomy were present in 2.7% of probands and 1.9 and 0.9% of patients from informative families, respectively. Genotype accurately predicted phenotype in 90.5, 85.1, and 97.8% of patients with salt-wasting, simple virilizing, and NC mutations, respectively. Conclusions: Extensive genetic analysis beyond targeted CYP21A2 mutational detection is often required to accurately determine genotype in patients with CAH due to the high frequency of complex genetic variation.
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The pathogenic IVS2-13A/C > G comprises 20 to 25% of CYP21A2 mutant alleles and translates to the most severe SW forms of the disease when inherited in homozygosity.
“Several reports in European, Mediterranean, Middle Eastern, and Chinese populations confirmed a high frequency of the pathogenic IVS2-13A/C > G and found it to comprise 20 to 25% of the CYP21A2 mutant alleles and to translate to the most severe SW forms of the disease when inherited in homozygosity [1, 4, 27, 39–43].”
From Salt-wasting congenital adrenal hyperplasia phenotype as a result of the TNXA/TNXB chimera 1 (CAH-X CH-1) and the pathogenic IVS2-13A/C > G in CYP21A2 gene (2023) · cites this paper as [39]
The Genotype-phenotype correlation section places patients homozygous for IVS2-13A/C>G in group A and identifies salt-wasting (SW) disease as that group's expected phenotype. The Mutation analysis section reports allele frequencies for deletions and single-point mutations overall, but the passages found do not establish that this specific variant comprises 20–25% of mutant alleles or confirm that frequency across the populations named in the citing sentence. (LLM, conf=0.83)
Experimental — accuracy not yet measuredAll subjects had previously completed comprehensive genetic analysis related to 21-hydroxylase deficiency, including targeted PCR-based CYP21A2 mutation analysis and screening for 30-Kb deletion; samples testing positive for 30-Kb deletion underwent a validated Sanger sequencing test to identify CYP21 chimeras.
“All subjects had previously completed comprehensive genetic analysis related to 21-hydroxylase de fi ciency at the time of study, including a targeted PCR-based CYP21A2 mutation analysis of 12 common CYP21A2 mutations and screening for the presence of a 30-Kb deletion based on 12 single-nucleotide polymorphic markers (Esoterix Laboratory Services, Calabasas Hills, CA). Samples testing positive for”
From High-Throughput Screening for CYP21A1P-TNXA/TNXB Chimeric Genes Responsible for Ehlers Danlos Syndrome in Patients with Congenital Adrenal Hyperplasia. (2019) · cites this paper as [7]
Split into 2 atoms — 0 confirmed, 2 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measuredApproximately 30% of classic CAH mutations are 30-Kb deletions.
“Given that approximately 30% of classic CAH mutations are 30-Kb deletions 7”
From High-Throughput Screening for CYP21A1P-TNXA/TNXB Chimeric Genes Responsible for Ehlers Danlos Syndrome in Patients with Congenital Adrenal Hyperplasia. (2019) · cites this paper as [7]
The Mutation analysis section (page unavailable) reports that gene deletions accounted for 30.5% of alleles in the study cohort. Table 3 (Discussion; page unavailable) lists 30-kb deletions but also distinguishes them from other deletions. The paper does not establish that approximately 30% of mutations in classic CAH specifically are 30-kb deletions. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe salt-wasting form generally results from combinations of two severe alleles (groups 0 or A); the simple-virilizing form arises in patients homozygous for group B variants or compound heterozygous for group B with null/A; the nonclassical phenotype usually manifests in carriers of two mild alleles (group C) or combinations of mild and severe variants.
“Consequently, the SW form generally results from combinations of two severe alleles (groups 0 or A), whereas the SV form arises in patients homozygous for group B variants, or compound heterozygous of group B variants with groups null or A. The NC phenotype usually manifests in carriers of two mild alleles (group C) or combinations of mild and severe (groups null, A or B) variants (22, 26, 47, 48)”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [26]
Most affected individuals are compound heterozygotes, and clinical outcome is typically determined by the allele that maintains the highest residual enzyme activity.
“Most affected individuals are compound heterozygotes, and the clinical outcome is typically determined by the allele that maintains the highest residual enzyme activity.”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [26]
A strong correlation between genotype and phenotype has been consistently reported across multiple populations in 21-OHD.
“In 21-OHD, a strong correlation between genotype and phenotype has been consistently reported across multiple populations (22, 26, 46, 47).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [26]
The discovery of POR deficiency in 2004 provided an explanation for multiple hormonal deficiency initially known as apparent combined 17OH and 21OH deficiency.
“The discovery of POR deficiency in 2004 15,16 provided an explanation for multiple hormonal deficiency initially known as apparent combined 17OH and 21OH deficiency.”
From Congenital adrenal hyperplasia (2017) · cites this paper as [15]
Phenotypic classification was determined using clinical and hormonal criteria and had been previously reported.
“Phenotypic classification was determined based on clinical and hormonal criteria and has been previously reported 11.”
From Cortical bone mineral density in patients with congenital adrenal hyperplasia due to 21-hydroxylase deficiency (2015) · cites this paper as [11]
Good genotype-phenotype correlation was observed and has been previously reported.
“Good genotype-phenotype correlation was observed and has been previously reported (5).”
From Clinical characteristics of a cohort of 244 patients with congenital adrenal hyperplasia (2012) · cites this paper as [5]
Diagnosis was confirmed with hormonal testing and genotyping.
“The diagnosis was confirmed with hormonal testing and genotyping (5).”
From Clinical characteristics of a cohort of 244 patients with congenital adrenal hyperplasia (2012) · cites this paper as [5]
For NCCAH, almost 70% of diagnosed patients are compound heterozygotes carrying one allele causing classic CAH and one causing NCCAH.
“For NCCAH, almost 70% of diagnosed patients are compound heterozygotes, carrying one allele that causes classic CAH and one that causes NCCAH (171, 246).”
From Congenital Adrenal Hyperplasia Due to Steroid 21-Hydroxylase Deficiency: An Endocrine Society* Clinical Practice Guideline (2018) · cites this paper as [246]
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- Authors
- Finkielstain, G. P., Chen, W., Mehta, S. P., Fujimura, F. K., Hanna, R. M., Van Ryzin, C., McDonnell, N. B., & Merke, D. P.
- Affiliations
- National Institutes of Health (US)
- National Institute on Aging (US)
- Esoterix, Inc. (F.K.F.), Calabasas Hills, California 91301
- The Eunice Kennedy Shriver National Institute of Child Health and Human Development, Clinical Center (S.P.M., R.M.H., C.V.R., D.P.M.), National Institutes of Health, Bethesda, Maryland 20892
- Corresponding author
- Merke, Deborah P.
- ORCID
- Merke, Deborah P.
- Venue
- The Journal of Clinical Endocrinology & Metabolism
- Publisher
- The Endocrine Society
- Published
- 2011-01-01
- Volume
- 96
- Issue
- 1
- Pages
- E161-E172
- ISSN
- 0021-972X (ISSN-L)
- 1945-7197
- PMC
- PMC3038490
- OpenAlex
- W2117425767
- Cited by
- 192
- References
- 63
- Citations by year
- 2026: 7 · 2025: 12 · 2024: 12 · 2023: 10 · 2022: 12 · 2021: 15 · 2020: 11 · 2019: 15 · 2018: 11 · 2017: 9 · 2016: 11 · 2015: 12 · 2014: 12 · 2013: 17 · 2012: 14
- FWCI
- 5.34
- Type
- journal article
- Language
- en
- Open access
- bronze
- doi.org
- Locations
- The Journal of Clinical Endocrinology & Metabolism (publishedVersion)
- Europe PMC (PubMed Central) (publishedVersion)
- PubMed Central (publishedVersion)
- PubMed (publishedVersion)
- Funders
- CARES Foundation
- National Institutes of Health
- U.S. Public Health Service
- National Institute of Child Health and Human Development
- NIH Clinical Center
- Eunice Kennedy Shriver National Institute of Child Health and Human Development
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Sexual Differentiation and Disorders
- Health Sciences › Medicine › Endocrinology, Diabetes and Metabolism › Adrenal Hormones and Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Keywords
- congenital adrenal hyperplasia, 21-hydroxylase deficiency, CYP21A2 mutations, novel mutations, compound heterozygosity, copy number variation, uniparental disomy, de novo mutations, genotype-phenotype correlation, salt-wasting CAH, simple virilizing CAH
- MeSH terms
- Adolescent, Adrenal Hyperplasia, Congenital, Adult, Aged, Alleles, Child, Child, Preschool, DNA Mutational Analysis, Female, Genetic Testing, Genotype, Humans, Infant, Male, Middle Aged, Mutation, Phenotype, Steroid 21-Hydroxylase, United States, Blotting, Southern, Reverse Transcriptase Polymerase Chain Reaction, Genetic Association Studies
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
What counts as a claim ›How we measure confidence ›How we check this ›
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