Genetics in Congenital Adrenal Hyperplasia Due to 21-Hydroxylase Deficiency and Clinical Implications
Open accessAbstract
Of all congenital adrenal hyperplasia (CAH), 95% to 99% is 21-hydroxylase deficiency (21OHD), an autosomal recessive disease. 21OHD is due to an insufficiency of 21-hydroxylase enzyme, which is encoded by the CYP21A2 gene and involved in cortisol and aldosterone production. The clinical presentation differs widely from severe classic to mild nonclassic CAH. 21OHD represents one of the most complex and at the same time intriguing topics in human genetics and its molecular diagnosis involves ongoing challenges. To provide a meticulous presentation of the topic, we searched the past and present literature, including original articles and reviews from PubMed, ScienceDirect, Web of Science, Embase, and Scopus, using search terms for genetics of 21OHD, 21OHD variants, molecular diagnosis of 21OHD, and 21OHD genetic testing. We offer a comprehensive review focusing on recent developments, new concepts, and conclusions.
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Microconversion events, in which one or more deleterious pseudogene-derived variants are transferred into CYP21A2 during meiosis, represent 70-75% of all cases.
“Among these, microconversion events, in which one or more deleterious pseudogene-derived variants are transferred into CYP21A2 during meiosis, represent 70–75% of all cases (5, 16, 19, 20).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
The Disease-Causing Variants section says microconversions transfer deleterious pseudogene variants into CYP21A2 and represent 70%–75% of intergenic recombination events. It says those events account for over 95% of deleterious variants leading to 21-hydroxylase deficiency, so the stated 70%–75% denominator is not explicitly all cases. The Genetic Background section links recombination in this region to meiosis. (LLM, conf=0.88)
Experimental — accuracy not yet measuredPopulation-based studies reveal rare or population-specific alleles, highlighting extensive allelic heterogeneity of 21-OHD and the necessity of using ethnically tailored genetic panels for accurate diagnosis and effective genetic counseling.
“Nevertheless, population-based studies continue to reveal rare or population-specific alleles, highlighting the extensive allelic heterogeneity of 21-OHD and the necessity of using ethnically tailored genetic panels for accurate diagnosis and effective genetic counseling (5, 16, 19, 22, 28, 33–35).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
Split into 2 atoms — 1 confirmed, 1 partially supported, 0 disputed, 0 misattributed, 0 unverifiable. Expand the claim to see per-atom verdicts.
Experimental — accuracy not yet measured90-95% of pathogenic CYP21A2 variants arise from intergenic recombination between the active gene and its pseudogene within the RCCX module.
“Overall, 90–95% of pathogenic CYP21A2 variants arise from intergenic recombination between the active gene and its pseudogene within the RCCX module.”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
The Disease-Causing Variants section attributes the great majority of deleterious variants to intergenic recombination involving CYP21A2 and its pseudogene, and the Gene Locus Structure section places those genes in the RCCX region. The source gives the overall figure as “over 95%,” however, rather than the claimed 90–95%. (LLM, conf=0.86)
Experimental — accuracy not yet measuredWhen combined with MLPA for copy number analysis, Sanger sequencing provides nearly complete diagnostic coverage, identifying up to 98-99% of classical pathogenic alleles in most populations.
“When combined with complementary methods such MLPA for copy number analysis, it provides nearly complete diagnostic coverage, identifying up to 98-99% of classical pathogenic alleles in most populations (1, 16, 76).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
The Molecular Diagnosis of 21OHD section calls PCR-based sequence analysis combined with MLPA best-practice genotyping and says MLPA determines gene copy number. It does not specify Sanger sequencing or report that the combination identifies 98–99% of classical pathogenic alleles in most populations; the numerical coverage claim is unsupported by our copy. No page number is available in the indexed passages. (LLM, conf=0.88)
Experimental — accuracy not yet measuredNoninvasive cell-free fetal DNA testing enables fetal sex determination and genotyping as early as 4-5 weeks of gestation, allowing prenatal therapy to be limited to affected females only.
“Noninvasive cell-free fetal DNA testing enables fetal sex determination and genotyping as early as 4–5 weeks of gestation, allowing prenatal therapy to be limited to affected females only (16, 100).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
The Prenatal Diagnosis section says cell-free fetal DNA is detectable in the fourth or fifth gestational week and can determine fetal sex by the fifth week. It reports fetal CAH status correctly determined by 5 weeks and 6 days, not genotyping at 4–5 weeks. It also says treatment should be considered for affected female fetuses, but cautions that prenatal dexamethasone is controversial and should be given only in an ethically approved follow-up study. (LLM, conf=0.88)
Experimental — accuracy not yet measured
CYP21A2 genotyping may be complicated by large deletions and gene conversions that generate TNXA/TNXB or CYP21A1P/CYP21A2 chimeric alleles through non-allelic homologous recombination.
“Beyond the effect of individual variants, CYP21A2 genotyping may be complicated by large deletions and gene conversions that generate TNXA/TNXB or CYP21A1P/CYP21A2 chimeric alleles through non-allelic homologous recombination.”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
The Disease-Causing Variants section describes unequal recombination and associated 30-kb deletions producing both CYP21A1P/CYP21A2 and TNXA/TNXB chimeras. Molecular Diagnosis of 21OHD says deletions can complicate genotyping because amplified fragments may contain chimeric genes. The paper discusses gene conversion separately as transfer of short sequences; it does not say gene conversion generates these chimeras. (LLM, conf=0.83)
Experimental — accuracy not yet measuredHigh homology and tandem configuration make the RCCX region prone to meiotic misalignment, fostering recurrent recombination through unequal crossover and gene conversion, which are the predominant mechanisms underlying pathogenic variants in 21-OHD.
“The abovementioned high degree of homology and tandem configuration make this region particularly prone to meiotic misalignment, which fosters recurrent recombination through unequal crossover and gene conversion. These processes constitute the predominant mechanisms underlying pathogenic variants in 21-OHD (16–19).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
CYP21A1P is inactive because it harbors deleterious variants including seven missense substitutions, an exon 3 frameshift, the intron 2 splice change c.293-13C>G, truncating or frameshift variants in exons 7 and 8, the exon 6 E6 cluster, and promoter SNVs that reduce transcription to about 20% of normal.
“The CYP21A1P pseudogene is inactive because it harbors numerous deleterious variants across its promoter and coding regions, including seven missense substitutions, an exon 3 frameshift, the intron 2 splice change c.293-13C>G, and truncating or frameshift variants in exons 7 and 8.”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
The remaining 20-25% of pathogenic CYP21A2 variants are attributable to unequal meiotic crossovers, giving rise to large deletions, duplications, and chimeric CYP21A1P/CYP21A2 genes.
“The remaining 20–25% are attributable to unequal meiotic crossovers, giving rise to extensive genomic rearrangements, including large deletions, duplications, and the formation of chimeric CYP21A1P/CYP21A2 genes.”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
Only 5-10% of small pathogenic variants in CYP21A2 occur independently of gene conversion events, and some of these have founder effects.
“In contrast, only 5-10% of small pathogenic variants in CYP21A2 occur independently of gene conversion events; some of these have founder effects, providing valuable insights into population history and migration patterns (5, 16, 19–22).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [16]
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Cited by
Sorted by citations
Miranda, M. C. D., Oliveira, A. C. M. D., Soares, G. J., Batatinha, J. A. P., Latronico, A. C., Mendonca, B. B., & Bachega, T. A. S. S. (2026) · Frontiers in Endocrinology · doi:10.3389/fendo.2026.1770274 · Cited by 2 · see citing works
“When combined with complementary methods such MLPA for copy number analysis, it provides nearly complete diagnostic coverage, identifying up to 98-99% of classical pathogenic alleles in most populations (1, 16, 76).”
Influential
- Authors
- Concolino, P., & Falhammar, H.
- Affiliations
- Agostino Gemelli University Polyclinic (IT)
- Karolinska University Hospital (SE)
- Corresponding author
- Falhammar, Henrik
- Venue
- Journal of the Endocrine Society
- Publisher
- The Endocrine Society
- Published
- 2025-01-28
- Volume
- 9
- Issue
- 3
- Pages
- bvaf018-bvaf018
- ISSN
- 2472-1972 (ISSN-L)
- PMC
- PMC11795198
- OpenAlex
- W4406913133
- Cited by
- 12
- References
- 28
- Citations by year
- 2026: 10 · 2025: 2
- FWCI
- 1.06
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Journal of the Endocrine Society (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- Funders
- Magnus Bergvall's Foundation
- Stockholm County Council
- Karolinska Institutet
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Sexual Differentiation and Disorders
- Health Sciences › Medicine › Endocrinology, Diabetes and Metabolism › Adrenal Hormones and Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Keywords
- congenital adrenal hyperplasia, 21-hydroxylase deficiency, CYP21A2 gene, autosomal recessive inheritance, molecular diagnosis, genetic testing
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