Characteristics of In2G Variant in Congenital Adrenal Hyperplasia Due to 21-Hydroxylase Deficiency
Open accessAbstract
Substantial research has been performed during the last decades on the clinical and genetic variability of congenital adrenal hyperplasia (CAH) and its most common form, 21-hydroxylase deficiency (21OHD). CAH is one of the most prevalent autosomal recessive diseases in humans, and it can be divided into classic—further subdivided into salt wasting (SW) and simple virilizing (SV)—and non-classic (NC) forms. Pathogenic variants of CYP21A2 gene, encoding the 21-hydroxylase enzyme, have been reported with variable prevalence in different populations. NM_000500.9:c.293-13C/A>G (In2G) variant represents the most common CYP21A2 gene changes related to the classic 21OHD form. However, the phenotype of In2G carriers is variable depending on the variant homozygous/heterozygous status and combination with other CYP21A2 pathogenic variants. In addition, identical genotypes, harboring the homozygous In2G variant, can present with variable phenotypes including the SW and SV or rarely NC form of the disease. Here, we analyze and present the clinical aspects, genotype/phenotype correlations, and other characteristics related to the CYP21A2 In2G variant.
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The c.293-13C>G (I2 splice) variant is the most prevalent pathogenic allele, accounting for approximately 20-25% of reported genotypes.
“Across global cohorts, the c.293-13C>G (I2 splice) variant consistently emerges as the most prevalent pathogenic allele, accounting for approximately 20–25% of reported genotypes (24).”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [24]
The CYP21A2 In2G Variant section calls In2G the most common CAH mutation in the majority of countries and ethnicities, but explicitly notes exceptions. It reports prevalence of 20.6%–30.3% in selected studies, while Table 1 shows a wider range across countries and labels its counts as alleles, not genotypes. Thus the source does not support a consistent global figure of 20%–25% of reported genotypes. (LLM, conf=0.88)
Experimental — accuracy not yet measuredThe intron-2 splice variant (c.293-13C>G) reduces correct splicing by strengthening a cryptic acceptor and promoting aberrant exon-3 inclusion/skipping, normally leading to severe disease; however, clinical presentation can vary from SW to SV and rarely NC.
“The intron-2 splice variant (c.293-13C>G, “I2 splice”), one of the most common variants among different populations, reduces correct splicing by strengthening a cryptic acceptor and promoting aberrant exon-3 inclusion/skipping, normally leading to severe disease; however, the clinical presentation can vary from the SW form, through the SV form and rarely the NC form.”
From Evolution of molecular diagnostic strategies for 21-hydroxylase deficiency: from classical methods to advanced genomic techniques (2026) · cites this paper as [24]
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Kocova, M., Anastasovska, V., & Falhammar, H. (2020) · Endocrine · doi:10.1007/s12020-020-02323-3 · Cited by 24 · see citing works
Self-citationCongenital adrenal hyperplasia: An Indian experience
Maiti, A., & Chatterjee, S. (2011) · Journal of Paediatrics and Child Health · doi:10.1111/j.1440-1754.2011.02104.x · Cited by 21 · see citing works
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CYP21A2 intronic variants causing 21-hydroxylase deficiency
Concolino, P., Rizza, R., Costella, A., Carrozza, C., Zuppi, C., & Capoluongo, E. (2017) · Metabolism · doi:10.1016/j.metabol.2017.03.003 · Cited by 16 · see citing works
Self-citationAnastasovska, V., & Kočova, M. (2010) · Journal of Pediatric Endocrinology and Metabolism · doi:10.1515/jpem.2010.147 · Cited by 12 · see citing works
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A pilot study on newborn screening for congenital adrenal hyperplasia in Beijing
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Self-citationCharacterization of a new splicing mutation in the steroid 21-hydroxylase gene
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The impact of CYP21A2 (P30L/I172N) genotype on female fertility in one family
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First insights into the genetics of 21‐hydroxylase deficiency in the Roma population
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Self-citationMutational Spectrum of the Steroid 21-Hydroxylase Gene In Sweden
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Flagged first, then by citations
3 of the 106 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Long-Term Outcomes of Congenital Adrenal Hyperplasia
Nordenström, A., Lajić, S., & Falhammar, H. (2022) · Endocrinology and Metabolism · doi:10.3803/enm.2022.1528 · Cited by 41 · see citing works
Self-citationConcolino, P., & Falhammar, H. (2025) · Journal of the Endocrine Society · doi:10.1210/jendso/bvaf018 · Cited by 12 · see citing works
Self-citationConcolino, P. (2024) · Current Issues in Molecular Biology · doi:10.3390/cimb46050291 · Cited by 7 · see citing works
Self-citationConcolino, P., Perrucci, A., Carrozza, C., & Urbani, A. (2023) · Molecular Diagnosis & Therapy · doi:10.1007/s40291-023-00666-x · Cited by 6 · see citing works
Self-citationGenotype-phenotype correlation in patients with 21-hydroxylase deficiency
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The prevalence and genotype of 21-hydroxylase deficiency in the Croatian Romani population
Dumic, K. K., Grubić, Z., Kuŝec, V., Braovac, D., Gotovac, K., Vinković, M., Vučinić, M., & Dumić, M. (2023) · Frontiers in Endocrinology · doi:10.3389/fendo.2023.1170449 · Cited by 4 · see citing works
Miranda, M. C. D., Oliveira, A. C. M. D., Soares, G. J., Batatinha, J. A. P., Latronico, A. C., Mendonca, B. B., & Bachega, T. A. S. S. (2026) · Frontiers in Endocrinology · doi:10.3389/fendo.2026.1770274 · Cited by 2 · see citing works
“The most accepted hypothesis for that is a small number of transcripts avoiding aberrant splicing, providing a small amount of the wild 21-hydroxylase enzyme, which is suf fi cient for a milder clinical presentation of the disease (24).”
Antysheva, Z., Esibov, A. A., Avsievich, E. S., Petriaikina, E. S., Yudin, V. S., Keskinov, A. A., Yudin, S. M., Svetlichnyy, D. V., Krupinova, J. A., Ивашечкин, А. А., et al. (2025) · International Journal of Molecular Sciences · doi:10.3390/ijms26146648 · Cited by 2 · see citing works
Exploration of the potential of genomic editing in the treatment of congenital adrenal hyperplasia
Graves, L. E., Christina, S., Mullany, K., Alexander, I. E., & Falhammar, H. (2025) · Frontiers in Endocrinology · doi:10.3389/fendo.2025.1719376 · Cited by 2 · see citing works
Self-citationBindellini, D., Michelet, R., Mirasbekov, Y., Lao, Q., Sukin, C., Huisinga, W., Merke, D. P., & Kloft, C. (2025) · CPT Pharmacometrics & Systems Pharmacology · doi:10.1002/psp4.70086 · Cited by 1 · see citing works
Abdelmonem, M. F., Saba, A. M., & Rammah, A. M. (2024) · The Scientific Journal of Medical Scholar · doi:10.55675/sjms.v3i4.98
Unique Case Report: A Rare Association of 21-Hydroxylase Deficiency with Triple X Karyotype
Azulay, R. S. D. S., Facundo, A. N., Sousa, S. S. E., Nascimento, G. C., Magalhães, M., Neto, C. P. D. O., de Abreu, J. D. M. F., Lago, D. C. F., Damianse, S. D. S. P., Carvalho, V. C., et al. (2025) · Genes · doi:10.3390/genes16030354
A rare case of 21-hydroxylase deficiency presenting as precocious puberty in a male child
Satekge, T. M., Tshipeng, J. P. M., Khosa, R. J., & Sutton, C. (2025) · doi:10.5348/100029z19ts2025cr
Nezu, M., Yamazaki, Y., Tanaka, K., Ishii, R., Hosaka, Y., Toyama, J., Takizawa, S., Oyama, T., Inoue, M., & Sasano, H. (2026) · Internal Medicine · doi:10.2169/internalmedicine.7667-26
de Sousa, A. G. P., Bezerra, A. D. A., & Chaves, C. E. D. P. (2026) · JCEM Case Reports · doi:10.1210/jcemcr/luag224
- Authors
- Kocova, M., Concolino, P., & Falhammar, H.
- Affiliations
- Agostino Gemelli University Polyclinic (IT)
- Karolinska University Hospital (SE)
- Venue
- Frontiers in Endocrinology
- Publisher
- Frontiers Media SA
- Published
- 2022-01-24
- Volume
- 12
- Pages
- 788812-788812
- ISSN
- 1664-2392 (ISSN-L)
- PMC
- PMC8818746
- OpenAlex
- W4206999530
- Cited by
- 15
- References
- 106
- Citations by year
- 2026: 3 · 2025: 6 · 2024: 2 · 2023: 3 · 2022: 1
- FWCI
- 0.31
- Type
- journal article
- Language
- en
- Open access
- gold
- doi.org
- Licence
- Locations
- Frontiers in Endocrinology (publishedVersion, cc-by)
- PubMed Central (publishedVersion, cc-by)
- PubMed (publishedVersion)
- DOAJ (DOAJ: Directory of Open Access Journals) (submittedVersion, cc-by-sa)
- Funders
- Magnus Bergvalls Stiftelse
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Sexual Differentiation and Disorders
- Health Sciences › Medicine › Endocrinology, Diabetes and Metabolism › Adrenal Hormones and Disorders
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Clinical Biochemistry › Metabolism and Genetic Disorders
- Keywords
- congenital adrenal hyperplasia, 21-hydroxylase deficiency, CYP21A2, splice site mutation, genotype-phenotype correlation, salt wasting, non-classical congenital adrenal hyperplasia, autosomal recessive inheritance, mutation carriers
- MeSH terms
- Adrenal Hyperplasia, Congenital, Genotype, Humans, Introns, Phenotype, Steroid 21-Hydroxylase
About these checks
Registry, retraction, Cites and statistics results are computed, not judged, with one exception: a printed reference that no index lists is read once by a model before it counts as a citation error. Claims are extracted by a model and kept only when their quote appears verbatim in the text; each cited source is then checked, with a model’s help, for whether it says what the claim relies on. Those verdicts can be wrong — read the claim’s quote and the cited source before relying on one.
Statistics and arithmetic are recomputed, not judged.
Confidence bands are shown only for fields calibrated on our annotated test set. None is calibrated yet, so no band is shown.
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