The physics of organoids: a biophysical approach to understanding organogenesis
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Organoids representing a diversity of tissues have recently been created, bridging the gap between cell culture and experiments performed in vivo. Being small and amenable to continuous monitoring, they offer the opportunity to scrutinize the dynamics of organ development, including the exciting prospect of observing aspects of human embryo development live. From a physicist's perspective, their ability to self-organize – to differentiate and organize cells in space – calls for the identification of the simple rules that underlie this capacity. Organoids provide tractable conditions to investigate the effects of the growth environment, including its molecular composition and mechanical properties, along with the initial conditions such as cell number and type(s). From a theoretical standpoint, different types of in silico modeling can complement the measurements performed in organoids to understand the role of chemical diffusion, contact signaling, differential cell adhesion and mechanical controls. Here, we discuss what it means to take a biophysical approach to understanding organogenesis in vitro and how we might expect such approaches to develop in the future.
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The chemical basis of morphogenesis
Turing, A. M. (1952) · Philosophical Transactions of the Royal Society of London. Series B, Biological Sciences · doi:10.1098/rstb.1952.0012 · Cited by 11,733 · see citing works
Single Lgr5 stem cells build crypt-villus structures in vitro without a mesenchymal niche
Sato, T., Vries, R. G., Snippert, H. J., van de Wetering, M., Barker, N., Stange, D. E., van Es, J. H., Abo, A., Kujala, P., Peters, P. J., et al. (2009) · Nature · doi:10.1038/nature07935 · Cited by 7,204 · see citing works
Role of YAP/TAZ in mechanotransduction
Dupont, S., Morsut, L., Aragona, M., Enzo, E., Giulitti, S., Cordenonsi, M., Zanconato, F., Le Digabel, J., Forcato, M., Bicciato, S., et al. (2011) · Nature · doi:10.1038/nature10137 · Cited by 5,979 · see citing works
Cerebral organoids model human brain development and microcephaly
Lancaster, M. A., Renner, M., Martin, C.-A., Wenzel, D., Bicknell, L. S., Hurles, M. E., Homfray, T., Penninger, J. M., Jackson, A. P., & Knoblich, J. A. (2013) · Nature · doi:10.1038/nature12517 · Cited by 5,372 · see citing works
Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry, and Engineering
Strogatz, S. H., Friedman, M. J., Mallinckrodt, A. J., & McKay, S. R. (1994) · Computers in Physics · doi:10.1063/1.4823332 · Cited by 4,654 · see citing works
Self-Organization in Biological Systems
Sneyd, J., Theraula, G., Bonabeau, E., Deneubourg, J.-L., & Franks, N. R. (2001) · doi:10.1515/9780691212920 · Cited by 2,949 · see citing works
Nonlinear Dynamics and Chaos: With Applications to Physics, Biology, Chemistry and Engineering
Strogatz, S. H., & Fox, R. F. (1995) · Physics Today · doi:10.1063/1.2807947 · Cited by 2,584 · see citing works
Paneth cells constitute the niche for Lgr5 stem cells in intestinal crypts
Sato, T., van Es, J. H., Snippert, H. J., Stange, D. E., Vries, R. G., van den Born, M., Barker, N., Shroyer, N. F., van de Wetering, M., & Clevers, H. (2011) · Nature · doi:10.1038/nature09637 · Cited by 2,510 · see citing works
Self-organizing optic-cup morphogenesis in three-dimensional culture
Eiraku, M., Takata, N., Ishibashi, H., Kawada, M., Sakakura, E., Okuda, S., Sekiguchi, K., Adachi, T., & Sasai, Y. (2011) · Nature · doi:10.1038/nature09941 · Cited by 2,001 · see citing works
Directed differentiation of human pluripotent stem cells into intestinal tissue in vitro
Spence, J. R., Mayhew, C. N., Rankin, S. A., Kuhar, M. F., Vallance, J. E., Tolle, K. A., Hoskins, E. E., Kalinichenko, V. V., Wells, S. I., Zorn, A. M., et al. (2010) · Nature · doi:10.1038/nature09691 · Cited by 1,911 · see citing works
Finite difference schemes and partial differential equations
(1991) · Choice Reviews Online · doi:10.5860/choice.28-2770 · Cited by 1,889 · see citing works
The Finite Element Method for Solid and Structural Mechanics
Zienkiewicz, O. C., Taylor, R. L., & Fox, D. (2014) · Elsevier eBooks · doi:10.1016/c2009-0-26332-x · Cited by 1,820 · see citing works
Kidney organoids from human iPS cells contain multiple lineages and model human nephrogenesis
Takasato, M., Er, P. X., Chiu, H. S., Maier, B., Baillie, G. J., Ferguson, C., Parton, R. G., Wolvetang, E. J., Roost, M. S., Chuva de Sousa Lopes, S. M., et al. (2015) · Nature · doi:10.1038/nature15695 · Cited by 1,627 · see citing works
Organoids as an in vitro model of human development and disease
Fatehullah, A., Tan, S. H., & Barker, N. (2016) · Nature Cell Biology · doi:10.1038/ncb3312 · Cited by 1,508 · see citing works
Self-formation of optic cups and storable stratified neural retina from human ESCs
Nakano, T., Ando, S., Takata, N., Kawada, M., Muguruma, K., Sekiguchi, K., Saito, K., Yonemura, S., Eiraku, M., & Sasai, Y. (2012) · Cell stem cell · doi:10.1016/j.stem.2012.05.009 · Cited by 1,447 · see citing works
Designer matrices for intestinal stem cell and organoid culture
Gjorevski, N., Sachs, N., Manfrin, A., Giger, S., Bragina, M. E., Ordóñez-Morán, P., Clevers, H., & Lutolf, M. P. (2016) · Nature · doi:10.1038/nature20168 · Cited by 1,426 · see citing works
Self-organization in biological systems
(2002) · Choice Reviews Online · doi:10.5860/choice.39-3374 · Cited by 1,124 · see citing works
A general formulation of alternating direction methods
Douglas, J. J., & Gunn, J. E. (1964) · Numerische Mathematik · doi:10.1007/bf01386093 · Cited by 712 · see citing works
Principles of the Self-Organizing System
Ashby, W. R. (1991) · Springer eBooks · doi:10.1007/978-1-4899-0718-9_38 · Cited by 619 · see citing works
Modeling mouse and human development using organoid cultures
Huch, M., & Koo, B. (2015) · Development · doi:10.1242/dev.118570 · Cited by 543 · see citing works
The Finite Element Method for Solid and Structural Mechanics
(2013) · Elsevier eBooks · doi:10.1016/b978-1-85617-634-7.00016-8 · Cited by 526 · see citing works
A Hitchhiker's Guide to Mechanobiology
Eyckmans, J., Boudou, T., Yu, X., & Chen, C. S. (2011) · Developmental Cell · doi:10.1016/j.devcel.2011.06.015 · Cited by 498 · see citing works
Fordham, R. P., Yui, S., Hannan, N. R. F., Soendergaard, C., Madgwick, A., Schweiger, P. J., Nielsen, O. H., Vallier, L., Pedersen, R. A., Nakamura, T., et al. (2013) · Cell stem cell · doi:10.1016/j.stem.2013.09.015 · Cited by 397 · see citing works
Mechanosensitive mechanisms in transcriptional regulation
Mammoto, A., Mammoto, T., & Ingber, D. E. (2012) · Journal of Cell Science · doi:10.1242/jcs.093005 · Cited by 393 · see citing works
Monte Carlo analysis of inverse problems
Mosegaard, K., & Sambridge, M. S. (2002) · Inverse Problems · doi:10.1088/0266-5611/18/3/201 · Cited by 341 · see citing works
Artificial three-dimensional niches deconstruct pancreas development in vitro
Greggio, C., Franceschi, F. D., Figueiredo-Larsen, M., Gobaa, S., Ranga, A., Semb, H., Lutolf, M., & Grapin-Botton, A. (2013) · Development · doi:10.1242/dev.096628 · Cited by 291 · see citing works
Self-citationProgrammed synthesis of three-dimensional tissues
Todhunter, M. E., Jee, N. Y., Hughes, A. J., Coyle, M. C., Cerchiari, A. E., Farlow, J., Garbe, J. C., LaBarge, M. A., Desai, T. A., & Gartner, Z. J. (2015) · Nature Methods · doi:10.1038/nmeth.3553 · Cited by 243 · see citing works
Alcaraz, J., Xu, R., Mori, H., Nelson, C. M., Mroue, R. M., Spencer, V. A., Brownfield, D., Radisky, D. C., Bustamante, C., & Bissell, M. J. (2008) · The EMBO Journal · doi:10.1038/emboj.2008.206 · Cited by 187 · see citing works
Buske, P., Galle, J., Barker, N., Aust, G., Clevers, H. C., & Loeffler, M. (2011) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1001045 · Cited by 166 · see citing works
Lee, D. A., Knight, M. M., Campbell, J. J., & Bader, D. L. (2010) · Journal of Cellular Biochemistry · doi:10.1002/jcb.22758 · Cited by 126 · see citing works
Lowe, A., Harris, R., Bhansali, P., Cvekl, A., & Liu, W. (2016) · Stem Cell Reports · doi:10.1016/j.stemcr.2016.03.011 · Cited by 117 · see citing works
Organoids and the genetically encoded self‐assembly of embryonic stem cells
Turner, D. A., Baillie‐Johnson, P., & Arias, A. M. (2015) · BioEssays · doi:10.1002/bies.201500111 · Cited by 115 · see citing works
On the biomechanics of stem cell niche formation in the gut – modelling growing organoids
Buske, P., Przybilla, J., Loeffler, M., Sachs, N., Sato, T., Clevers, H. C., & Galle, J. (2012) · FEBS Journal · doi:10.1111/j.1742-4658.2012.08646.x · Cited by 99 · see citing works
A 3D tension bioreactor platform to study the interplay between ECM stiffness and tumor phenotype
Cassereau, L., Miroshnikova, Y. A., Ou, G., Lakins, J. N., & Weaver, V. M. (2014) · Journal of Biotechnology · doi:10.1016/j.jbiotec.2014.11.008 · Cited by 97 · see citing works
Stencils with isotropic discretization error for differential operators
Patra, M., & Karttunen, M. (2005) · Numerical Methods for Partial Differential Equations · doi:10.1002/num.20129 · Cited by 86 · see citing works
Vertex dynamics simulations of viscosity-dependent deformation during tissue morphogenesis
Okuda, S., Inoue, Y., Eiraku, M., ADACHI, T., & Sasai, Y. (2014) · Biomechanics and Modeling in Mechanobiology · doi:10.1007/s10237-014-0613-5 · Cited by 80 · see citing works
DiMarco, R. L., Su, J., Yan, K. S., Dewi, R. E., Kuo, C. J., & Heilshorn, S. C. (2013) · Integrative Biology · doi:10.1039/c3ib40188j · Cited by 79 · see citing works
Relaxation‐expansion model for self‐driven retinal morphogenesis
Eiraku, M., ADACHI, T., & Sasai, Y. (2011) · BioEssays · doi:10.1002/bies.201100070 · Cited by 74 · see citing works
Tools to Study Cell Mechanics and Mechanotransduction
Lele, T. P., Sero, J., Matthews, B. D., Kumar, S., Xia, S., Montoya‐Zavala, M., Polte, T. R., Overby, D. R., Wang, N., & Ingber, D. E. (2007) · Methods in cell biology · doi:10.1016/s0091-679x(07)83019-6 · Cited by 67 · see citing works
Shape Transformations of Epithelial Shells
Misra, M., Audoly, B., Kevrekidis, I. G., & Shvartsman, S. Y. (2016) · Biophysical Journal · doi:10.1016/j.bpj.2016.03.009 · Cited by 67 · see citing works
Protein-engineered scaffolds for in vitro 3D culture of primary adult intestinal organoids
DiMarco, R. L., Dewi, R. E., Bernal, G., Kuo, C., & Heilshorn, S. C. (2015) · Biomaterials Science · doi:10.1039/c5bm00108k · Cited by 66 · see citing works
Ungrin, M. D., Clarke, G., Yin, T., Niebrugge, S., Nostro, M., Sarangi, F., Wood, G., Keller, G., & Zandstra, P. (2011) · Biotechnology and Bioengineering · doi:10.1002/bit.24375 · Cited by 59 · see citing works
Polarity, cell division, and out-of-equilibrium dynamics control the growth of epithelial structures
Cerruti, B., Puliafito, A., Shewan, A. M., Yu, W., Combes, A. N., Little, M. H., Chianale, F., Primo, L., Serini, G., Mostov, K. E., et al. (2013) · The Journal of Cell Biology · doi:10.1083/jcb.201305044 · Cited by 53 · see citing works
Okuda, S., Inoue, Y., Eiraku, M., Sasai, Y., & ADACHI, T. (2012) · Biomechanics and Modeling in Mechanobiology · doi:10.1007/s10237-012-0458-8 · Cited by 45 · see citing works
Simulation Frameworks for Morphogenetic Problems
Tanaka, S. (2015) · Computation · doi:10.3390/computation3020197 · Cited by 45 · see citing works
Pin, C., Parker, A., Gunning, A. P., Ohta, Y., Johnson, I. T., Carding, S. R., & Sato, T. (2014) · Integrative Biology · doi:10.1039/c4ib00236a · Cited by 43 · see citing works
SEM++: A particle model of cellular growth, signaling and migration
Milde, F., Tauriello, G., Haberkern, H., & Koumoutsakos, P. (2014) · Computational Particle Mechanics · doi:10.1007/s40571-014-0017-4 · Cited by 34 · see citing works
Three-Dimensional Traction Force Microscopy of Engineered Epithelial Tissues
Piotrowski-Daspit, A. S., Varner, V. D., Gjorevski, N., & Nelson, C. M. (2014) · Methods in molecular biology · doi:10.1007/978-1-4939-1164-6_13 · Cited by 17 · see citing works
Filas, B. A., Xu, G., & Taber, L. A. (2014) · Methods in molecular biology · doi:10.1007/978-1-4939-1164-6_1 · Cited by 15 · see citing works
Dahl-Jensen, S. B., Figueiredo-Larsen, M., Grapin‐Botton, A., & Sneppen, K. (2016) · Physical Biology · doi:10.1088/1478-3975/13/1/016007 · Cited by 15 · see citing works
Self-citation
Flagged first, then by citations
1 of the 51 references couldn’t be matched to a known paper.
Cited by
Sorted by citations
Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
Cowan, C. S., Renner, M., De Gennaro, M., Gross-Scherf, B., Goldblum, D., Hou, Y., Munz, M., Rodrigues, T. M., Krol, J., Szikra, T., et al. (2020) · Cell · doi:10.1016/j.cell.2020.08.013 · Cited by 654 · see citing works
Towards organoid culture without Matrigel
Kozlowski, M. T., Crook, C. J., & Ku, H. T. (2021) · Communications Biology · doi:10.1038/s42003-021-02910-8 · Cited by 409 · see citing works
Engineering Stem Cell Self-organization to Build Better Organoids
Brassard, J. A., & Lütolf, M. P. (2019) · Cell stem cell · doi:10.1016/j.stem.2019.05.005 · Cited by 379 · see citing works
Microtechnology-based methods for organoid models
Velasco, V., Shariati, S. A., & Esfandyarpour, R. (2020) · Microsystems & Nanoengineering · doi:10.1038/s41378-020-00185-3 · Cited by 253 · see citing works
Cell fate coordinates mechano-osmotic forces in intestinal crypt formation
Yang, Q., Xue, S.-L., Chan, C. J., Rempfler, M., Vischi, D., Maurer-Gutierrez, F., Hiiragi, T., Hannezo, E., & Liberali, P. (2021) · Nature Cell Biology · doi:10.1038/s41556-021-00700-2 · Cited by 183 · see citing works
Laurent, J., Blin, G., Chatelain, F., Vanneaux, V., Fuchs, A., Larghero, J., & Théry, M. (2017) · Nature Biomedical Engineering · doi:10.1038/s41551-017-0166-x · Cited by 117 · see citing works
Organotypic tumor slice cultures provide a versatile platform for immuno-oncology and drug discovery
Sivakumar, R., Chan, M., Shin, J. S., Nishida‐Aoki, N., Kenerson, H. L., Elemento, O., Beltran, H., Yeung, R. S. W., & Gujral, T. S. (2019) · OncoImmunology · doi:10.1080/2162402x.2019.1670019 · Cited by 106 · see citing works
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · BMC Biology · doi:10.1186/s12915-021-00958-w · Cited by 95 · see citing works
Modelling the endocrine pancreas in health and disease
Bakhti, M., Böttcher, A., & Lickert, H. (2018) · Nature Reviews Endocrinology · doi:10.1038/s41574-018-0132-z · Cited by 96 · see citing works
Kwon, O., Han, T.-S., & Son, M. (2020) · Frontiers in Cell and Developmental Biology · doi:10.3389/fcell.2020.593969 · Cited by 92 · see citing works
Understanding the Mechanobiology of Early Mammalian Development through Bioengineered Models
Vianello, S., & Lütolf, M. P. (2019) · Developmental Cell · doi:10.1016/j.devcel.2019.02.024 · Cited by 79 · see citing works
Mathematical Models of Organoid Cultures
Montes-Olivas, S., Marucci, L., & Homer, M. (2019) · Frontiers in Genetics · doi:10.3389/fgene.2019.00873 · Cited by 73 · see citing works
Emerging Bioelectronics for Brain Organoid Electrophysiology
Tasnim, K., & Jia Liu, B. (2021) · Journal of Molecular Biology · doi:10.1016/j.jmb.2021.167165 · Cited by 78 · see citing works
Molecular Force Measurement with Tension Sensors
Fischer, L. S., Rangarajan, S., Sadhanasatish, T., & Grashoff, C. (2021) · Annual Review of Biophysics · doi:10.1146/annurev-biophys-101920-064756 · Cited by 72 · see citing works
Kim, D., Lim, H., Youn, J., Park, T., & Kim, D. S. (2024) · Nature Communications · doi:10.1038/s41467-024-53073-z · Cited by 65 · see citing works
Metabolic and Mechanical Cues Regulating Pluripotent Stem Cell Fate
Perestrelo, T., Correia, M., Ramalho‐Santos, J., & Wirtz, D. (2018) · Trends in Cell Biology · doi:10.1016/j.tcb.2018.09.005 · Cited by 57 · see citing works
Sculpting with stem cells: how models of embryo development take shape
Veenvliet, J. V., Lenne, P., Turner, D. A., Nachman, I., & Trivedi, V. (2021) · Development · doi:10.1242/dev.192914 · Cited by 47 · see citing works
Defining Lineage Potential and Fate Behavior of Precursors during Pancreas Development
Sznurkowska, M. K., Hannezo, É., Azzarelli, R., Rulands, S., Nestorowa, S., Hindley, C. J., Nichols, J., Göttgens, B., Huch, M., Philpott, A., et al. (2018) · Developmental Cell · doi:10.1016/j.devcel.2018.06.028 · Cited by 48 · see citing works
Experimental and Computational Methods for the Study of Cerebral Organoids: A Review
Poli, D., Magliaro, C., & Ahluwalia, A. D. (2019) · Frontiers in Neuroscience · doi:10.3389/fnins.2019.00162 · Cited by 46 · see citing works
Everything You Always Wanted to Know About Organoid-Based Models (and Never Dared to Ask)
Hautefort, I., Poletti, M., Papp, D., & Korcsmaros, T. D. (2022) · Cellular and Molecular Gastroenterology and Hepatology · doi:10.1016/j.jcmgh.2022.04.012 · Cited by 46 · see citing works
The role of physical cues in the development of stem cell-derived organoids
Tortorella, I., Argentati, C., Emiliani, C., Martino, S., & Morena, F. (2021) · European Biophysics Journal · doi:10.1007/s00249-021-01551-3 · Cited by 44 · see citing works
Jiang, L., Shen, Y., Liu, Y., Zhang, L. J., & Jiang, W. (2022) · Theranostics · doi:10.7150/thno.66670 · Cited by 42 · see citing works
Deloria, A. J., Haider, S., Dietrich, B., Kunihs, V., Oberhofer, S., Knöfler, M., Leitgeb, R. A., Liu, M., Drexler, W., & Haindl, R. (2020) · IEEE Transactions on Biomedical Engineering · doi:10.1109/tbme.2020.3038466 · Cited by 39 · see citing works
Rethinking Matrigel: The Complex Journey to Matrix Alternatives in Organoid Culture
Wolff, L., & Hendrix, S. (2025) · Advanced Science · doi:10.1002/advs.202508734 · Cited by 44 · see citing works
Shou, Y., Johnson, S. C., Quek, Y. J., Li, X., & Tay, A. K. P. (2022) · Materials Today Bio · doi:10.1016/j.mtbio.2022.100269 · Cited by 34 · see citing works
Induction of inverted morphology in brain organoids by vertical-mixing bioreactors
Suong, D. N. A., Imamura, K., Inoue, I., Kabai, R., Sakamoto, S., Okumura, T., Kato, Y., Kondo, T., Yada, Y., Klein, W. L., et al. (2021) · Communications Biology · doi:10.1038/s42003-021-02719-5 · Cited by 32 · see citing works
Cardiac organoids: a new tool for disease modeling and drug screening applications
Yaqinuddin, A., Jabri, A., Mhannayeh, A., Taftafa, B., Alsharif, M., Abbad, T., Khan, J. A., Elsalti, A., Chinnappan, R., Alshehri, E. A., et al. (2025) · Frontiers in Cardiovascular Medicine · doi:10.3389/fcvm.2025.1537730 · Cited by 27 · see citing works
Hydraulic and electric control of cell spheroids
Duclut, C., Prost, J., & Jülicher, F. (2021) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.2021972118 · Cited by 26 · see citing works
Spheroids and organoids derived from colorectal cancer as tools for in vitro drug screening
Zawawi, S. S. A., Salleh, E. A., & Musa, M. (2024) · Exploration of Targeted Anti-tumor Therapy · doi:10.37349/etat.2024.00226 · Cited by 25 · see citing works
Collective behaviours in organoids
Yang, Q., & Liberali, P. (2021) · Current Opinion in Cell Biology · doi:10.1016/j.ceb.2021.06.006 · Cited by 23 · see citing works
Román, J. A. A.-S., Gordillo-Vázquez, C., Franco-Barranco, D., Morato, L., Fernández-Espartero, C. H., Baonza, G., Tagua, A., Vicente‐Munuera, P., Palacios, A. M., Gavilán, M. P., et al. (2023) · Cell Reports Methods · doi:10.1016/j.crmeth.2023.100597 · Cited by 24 · see citing works
In vitro breast cancer model with patient-specific morphological features for personalized medicine
Han, J., Jeon, S., Kim, M. K., Jeong, W., Yoo, J. J., & Kang, H. (2022) · Biofabrication · doi:10.1088/1758-5090/ac6127 · Cited by 22 · see citing works
Lee, B. H., Fuji, K., Petzold, H., Seymour, P. A., Yennek, S., Schewin, C., Lewis, A., Riveline, D., Hiraiwa, T., Sano, M., et al. (2025) · Nature Cell Biology · doi:10.1038/s41556-025-01832-5 · Cited by 23 · see citing works
Self-citationRethinking embryology in vitro: A synergy between engineering, data science and theory
Gritti, N., Oriola, D., & Trivedi, V. (2020) · Developmental Biology · doi:10.1016/j.ydbio.2020.10.013 · Cited by 21 · see citing works
Multi-cellular aggregates, a model for living matter
Ackermann, J., Amar, M. B., & Joanny, J. (2021) · Physics Reports · doi:10.1016/j.physrep.2021.05.001 · Cited by 21 · see citing works
Generation of iPSC-derived human forebrain organoids assembling bilateral eye primordia
Gabriel, E., Albanna, W., Pasquini, G., Ramani, A., Josipović, N., Mariappan, A., Riparbelli, M. G., Callaini, G., Karch, C. M. M., Goureau, O., et al. (2023) · Nature Protocols · doi:10.1038/s41596-023-00814-x · Cited by 20 · see citing works
Microfabrication methods for 3D spheroids formation and their application in biomedical engineering
Ahn, S., Kim, D., Cho, K., & Koh, W. (2023) · Korean Journal of Chemical Engineering · doi:10.1007/s11814-022-1327-5 · Cited by 20 · see citing works
Organoids in concert: engineering in vitro models toward enhanced fidelity
Chen, Z., Sugimura, R., Zhang, Y. S., Ruan, C., & Wen, C. (2024) · Aggregate · doi:10.1002/agt2.478 · Cited by 20 · see citing works
Loss ofRAD9Bimpairs early neural development and contributes to the risk for human spina bifida
Cao, X., Tian, T., Steele, J., Cabrera, R. M., Aguiar‐Pulido, V., Wadhwa, S., Bhavani, N., Bi, P., Gargurevich, N. H., Hoffman, E. N., et al. (2020) · Human Mutation · doi:10.1002/humu.23969 · Cited by 19 · see citing works
Little, M. H. (2017) · Development · doi:10.1242/dev.150292 · Cited by 17 · see citing works
Liang, L., Cui, R., Zhong, S., Wang, Z., He, Z., Duan, H., Guo, X., Lü, J., Hu, H., Li, C., et al. (2022) · Biomaterials Science · doi:10.1039/d2bm00589a · Cited by 16 · see citing works
The logic of monsters: development and morphological diversity in stem-cell-based embryo models
Cao, D., Garai, S., DiFrisco, J., & Veenvliet, J. V. (2024) · Interface Focus · doi:10.1098/rsfs.2024.0023 · Cited by 13 · see citing works
Gan, J., Bolon, B. N., Vleet, T. V., & Wood, C. E. (2021) · Elsevier eBooks · doi:10.1016/b978-0-12-821044-4.00005-4 · Cited by 11 · see citing works
Biophysical models of early mammalian embryogenesis
Cockerell, A. J., Wright, L., Dattani, A., Guo, G., Smith, A. G., Tsaneva-Atanasova, K. T., & Richards, D. M. (2023) · Stem Cell Reports · doi:10.1016/j.stemcr.2022.11.021 · Cited by 11 · see citing works
Increased reproducibility of brain organoids through controlled fluid dynamics
Aiello, G., Nemir, M., Vidimova, B., Ramel, C., Viguie, J., Ravera, A., Wrzesinski, K., & Bagni, C. (2025) · EMBO Reports · doi:10.1038/s44319-025-00619-x · Cited by 13 · see citing works
Kashkooli, F. M., Mirala, F., Tehrani, M. H. H., Alirahimi, M., Souri, M., Golzaryan, A., Kar, S., & Soltani, M. (2025) · WIREs Mechanisms of Disease · doi:10.1002/wsbm.70000 · Cited by 13 · see citing works
Three-Dimensional Explant Platform for Studies on Choroid Plexus Epithelium
Petersen, N., Torz, L., Jensen, K. H. R., Hjortø, G. M., Spieß, K., & ROSENKILDE, M. M. (2020) · Frontiers in Cellular Neuroscience · doi:10.3389/fncel.2020.00108 · Cited by 9 · see citing works
Laussu, J., Michel, D., Magne, L., Segonds, S., Marguet, S., Hamel, D., Quaranta, M., Barreau, F., Mas, E., Velay, V., et al. (2025) · PLoS Computational Biology · doi:10.1371/journal.pcbi.1012681 · Cited by 8 · see citing works
Animal-free alternatives for Matrigel in human iPSC-derived blood vessel organoid culture
Giles, R. H., Meijer, E. M., Maas, R. G. C., van Dijk, C. G. M., Verhaar, M. C., & Cheng, C. (2025) · Scientific Reports · doi:10.1038/s41598-025-20091-w · Cited by 8 · see citing works
Applying 3D cultures and high-throughput technologies to study host-pathogen interactions
Martinis, E. C. P. D., Alves, V. F., Pereira, M. G., Andrade, L. N., Abichabki, N. D. L. M., Abramova, A., Dannborg, M., & Bengtsson‐Palme, J. (2025) · Frontiers in Immunology · doi:10.3389/fimmu.2025.1488699 · Cited by 6 · see citing works
Jin, Y., Park, S., & Cho, S. (2026) · Nature Reviews Bioengineering · doi:10.1038/s44222-025-00384-5 · Cited by 6 · see citing works
Yokoyama, Y., KAMEO, Y., & ADACHI, T. (2023) · Journal of the mechanical behavior of biomedical materials/Journal of mechanical behavior of biomedical materials · doi:10.1016/j.jmbbm.2023.105828 · Cited by 5 · see citing works
Retina organoids: Window into the biophysics of neuronal systems
Salbaum, K. A., Shelton, E., & Serwane, F. (2022) · Biophysics Reviews · doi:10.1063/5.0077014 · Cited by 4 · see citing works
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2020) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2020.07.12.199463 · Cited by 4 · see citing works
Weichselberger, V., Moore, G., Tlili, S., Merkel, M., Lenne, P., & Trivedi, V. (2025) · Developmental Cell · doi:10.1016/j.devcel.2025.11.008 · Cited by 3 · see citing works
Wadkin, L. E., Makarenko, I., Parker, N. G., Shukurov, A., Figueiredo, F. C., & Lako, M. (2023) · Current Stem Cell Reports · doi:10.1007/s40778-023-00229-0 · Cited by 3 · see citing works
Engineering co-emergence in organoid models
Vasic, I., & McDevitt, T. C. (2021) · Progress in Biomedical Engineering · doi:10.1088/2516-1091/abe41e · Cited by 1 · see citing works
Takada, E., Mizuno, H. L., Takeoka, Y., & Mizuno, S. (2024) · Frontiers in Bioengineering and Biotechnology · doi:10.3389/fbioe.2024.1440434 · Cited by 1 · see citing works
Dissecting nephron morphogenesis using kidney organoids from human pluripotent stem cells
Garreta, E., Nauryzgaliyeva, Z., Marco, A., Safi, W., & Montserrat, N. (2021) · Current Opinion in Genetics & Development · doi:10.1016/j.gde.2021.10.002 · Cited by 1 · see citing works
New horizons of microphysiological systems: India forging its path in human-relevant research
Parvatam, S., Mahadik, K., Banerjee, A. A., Patil, K., Radha, V., & Rao, M. (2023) · Biology Open · doi:10.1242/bio.059847 · Cited by 1 · see citing works
Development and Application of Microfluidics in Organoid Formation
Achar, R. R., Archer, A. C., Soans, S. H., Bohra, S. K., Boregowda, M. H., Madhunapantula, S. V., & Srinivasan, A. (2022) · Springer eBooks · doi:10.1007/978-981-19-1379-2_14 · Cited by 1 · see citing works
Kim, D. S., Kim, D., Lim, H., Youn, J., & Park, T. (2023) · Research Square · doi:10.21203/rs.3.rs-3425714/v1 · Cited by 1 · see citing works
Use of Organoids Technology on Study of Liver Malignancy
Joob, B., & Wiwanitkit, V. (2018) · Indian Journal of Medical and Paediatric Oncology · doi:10.4103/ijmpo.ijmpo_126_17
Laussu, J., Michel, D., Magne, L., Segonds, S., Marguet, S., Hamel, D., Quaranta, M., Barreau, F., Mas, E., Velay, V., et al. (2023) · bioRxiv (Cold Spring Harbor Laboratory) · doi:10.1101/2023.05.15.540870
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111599
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111620
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111590
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111596
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111587
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111626
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111611
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111617
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111602
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111623
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111629
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111614
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111593
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111608
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111632
Hof, L., Moreth, T., Koch, M., Liebisch, T., Kurtz, M., Tarnick, J., Lissek, S. M., Verstegen, M. M. A., van der Laan, L. J. W., Huch, M., et al. (2021) · Figshare · doi:10.6084/m9.figshare.14111605
Bi, W., Cai, S., Xing, C., Wang, L., & Du, H. (2026) · Stem Cell Reviews and Reports · doi:10.1007/s12015-026-11101-z · Cited by 2 · see citing works
- Authors
- Dahl-Jensen, S., & Grapin-Botton, A.
- Affiliations
- University of Copenhagen (DK)
- DanStem and StemPhys, University of Copenhagen, 3B Blegdamsvej, Copenhagen N DK-2200, Denmark
- ORCID
- Grapin-Botton, Anne
- Venue
- Development
- Publisher
- The Company of Biologists
- Published
- 2017-03-15
- Volume
- 144
- Issue
- 6
- Pages
- 946-951
- ISSN
- 0950-1991 (ISSN-L)
- 1477-9129
- OpenAlex
- W2598862021
- Cited by
- 81
- References
- 51
- Citations by year
- 2026: 2 · 2025: 9 · 2024: 5 · 2023: 9 · 2022: 7 · 2021: 30 · 2020: 8 · 2019: 5 · 2018: 4 · 2017: 2
- FWCI
- 0.61
- Type
- journal article
- Language
- en
- Open access
- Licence
- Locations
- Development (publishedVersion)
- PubMed (publishedVersion)
- Research at the University of Copenhagen (University of Copenhagen) (publishedVersion, other-oa)
- HighWire Press Open Archive (submittedVersion)
- Funders
- Danmarks Grundforskningsfond (DNRF 116)
- Topics
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Cell Biology › Cellular Mechanics and Interactions
- Physical Sciences › Engineering › Biomedical Engineering › 3D Printing in Biomedical Research
- Life Sciences › Biochemistry, Genetics and Molecular Biology › Molecular Biology › Developmental Biology and Gene Regulation
- Keywords
- organoids, organogenesis, self-organization, cell differentiation, chemical diffusion, cell adhesion, tissue mechanics, in silico modeling, in vitro embryo development, growth conditions
- MeSH terms
- Animals, Humans, Models, Biological, Organoids, Computational Biology, Organogenesis, Biophysical Phenomena
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