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Systematic Analysis of SNARE Molecules in Arabidopsis: Dissection of the post-Golgi Network in Plant Cells
Open accessAbstract
In all eucaryotic cells, specific vesicle fusion during vesicular transport is mediated by membrane-associated proteins called SNAREs (soluble N-ethyl-maleimide sensitive factor attachment protein receptors). Sequence analysis identified a total of 54 SNARE genes (18 Qa-SNAREs/Syntaxins, 11 Qb-SNAREs, 8 Qc-SNAREs, 14 R-SNAREs/VAMPs and 3 SNAP-25) in the Arabidopsis genome. Almost all of them were ubiquitously expressed through out all tissues examined. A series of transient expression assays using green fluorescent protein (GFP) fused proteins revealed that most of the SNARE proteins were located on specific intracellular compartments: 6 in the endoplasmic reticulum, 9 in the Golgi apparatus, 4 in the trans-Golgi network (TGN), 2 in endosomes, 17 on the plasma membrane, 7 in both the prevacuolar compartment (PVC) and vacuoles, 2 in TGN/PVC/vacuoles, and 1 in TGN/PVC/plasma membrane. Some SNARE proteins showed multiple localization patterns in two or more different organelles, suggesting that these SNAREs shuttle between the organelles. Furthermore, the SYP41/SYP61-residing compartment, which was defined as the TGN, was not always located along with the Golgi apparatus, suggesting that this compartment is an independent organelle distinct from the Golgi apparatus. We propose possible combinations of SNARE proteins on all subcellular compartments, and suggest the complexity of the post-Golgi membrane traffic in higher plant cells.
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Citations
Cites
The neighbor-joining method: a new method for reconstructing phylogenetic trees.
(1987) · Molecular Biology and Evolution · doi:10.1093/oxfordjournals.molbev.a040454 · Cited by 59,715
Thompson, J. (1997) · Nucleic Acids Research · doi:10.1093/nar/25.24.4876 · Cited by 38,993
PHYLIP-Phylogeny inference package (Version 3.2)
Felsenstein, J. (1989) · Cladistics · Cited by 17,682
Krogh, A., Larsson, B., von Heijne, G., & Sonnhammer, E. L. L. (2001) · Journal of Molecular Biology · doi:10.1006/jmbi.2000.4315 · Cited by 12,654
Tree View: An application to display phylogenetic trees on personal computers
Page, R. D. M. (1996) · Bioinformatics · doi:10.1093/bioinformatics/12.4.357 · Cited by 10,178
SNAP receptors implicated in vesicle targeting and fusion
Söllner, T., Whiteheart, S. W., Brunner, M., Erdjument-Bromage, H., Geromanos, S., Tempst, P., & Rothman, J. E. (1993) · Nature · doi:10.1038/362318a0 · Cited by 3,237
Nagai, T., Ibata, K., Park, E. S., Kubota, M., Mikoshiba, K., & Miyawaki, A. (2002) · Nature Biotechnology · doi:10.1038/nbt0102-87 · Cited by 2,753
Crystal structure of a SNARE complex involved in synaptic exocytosis at 2.4 Å resolution
Sutton, R. B., Fasshauer, D., Jahn, R., & Brunger, A. T. (1998) · Nature · doi:10.1038/26412 · Cited by 2,417 · cited 1×
“…fusion, a trans-SNARE complex consisting of fourhelical bundles of the SNARE motif from three targetSNAREs (t-SNAREs) and one vesicle-associated SNARE (v-SNARE) is formed (Antonin et al., 2002; Bonifacino and Glick, 2004; Chen and Scheller, 2001; Jahn and Sudhof, 1999; Sutton et al., 1998).”
BackgroundWilschut, J. (1990) · Cited by 2,407
Mechanisms of intracellular protein transport
Rothman, J. E. (1994) · Nature · doi:10.1038/372055a0 · Cited by 2,265
Söllner, T., Bennett, M. K., Whiteheart, S. W., Scheller, R. H., & Rothman, J. E. (1993) · Cell · doi:10.1016/0092-8674(93)90376-2 · Cited by 1,896
The Mechanisms of Vesicle Budding and Fusion
Bonifacino, J. S., & Glick, B. S. (2004) · Cell · doi:10.1016/s0092-8674(03)01079-1 · Cited by 1,856
Regulation of Polar Auxin Transport by AtPIN1 in Arabidopsis Vascular Tissue
Gälweiler, L., Guan, C., Müller, A., Wisman, E., Mendgen, K., Yephremov, A., & Palme, K. (1998) · Science · doi:10.1126/science.282.5397.2226 · Cited by 1,530
Lateral relocation of auxin efflux regulator PIN3 mediates tropism in Arabidopsis
Friml, J., Wiśniewska, J., Benková, E., Mendgen, K., & Palme, K. (2002) · Nature · doi:10.1038/415806a · Cited by 1,426
A new vital stain for visualizing vacuolar membrane dynamics and endocytosis in yeast.
Vida, T. A., & Emr, S. D. (1995) · The Journal of cell biology · doi:10.1083/jcb.128.5.779 · Cited by 1,360
Jahn, R., Lang, T., & Südhof, T. C. (2003) · Cell · doi:10.1016/s0092-8674(03)00112-0 · Cited by 1,333
Membrane Fusion and Exocytosis
Jahn, R., & Südhof, T. C. (1999) · Annual Review of Biochemistry · doi:10.1146/annurev.biochem.68.1.863 · Cited by 1,259
SNARE-mediated membrane fusion
Chen, Y. A., & Scheller, R. H. (2001) · Nature Reviews Molecular Cell Biology · doi:10.1038/35052017 · Cited by 1,130
Geldner, N., Anders, N., Wolters, H., Keicher, J., Kornberger, W., Muller, P., Delbarre, A., Ueda, T., Nakano, A., & Jürgens, G. (2003) · Cell · doi:10.1016/s0092-8674(03)00003-5 · Cited by 1,122
Self-citationFasshauer, D., Sutton, R. B., Brunger, A. T., & Jahn, R. (1998) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.95.26.15781 · Cited by 1,055
SNARE-protein-mediated disease resistance at the plant cell wall
Collins, N. C., Thordal-Christensen, H., Lipka, V., Bau, S., Kombrink, E., Qiu, J.-L., Hückelhoven, R., Stein, M., Freialdenhoven, A., Somerville, S. C., et al. (2003) · Nature · doi:10.1038/nature02076 · Cited by 982
Lippincott-Schwartz, J., Donaldson, J. G., Schweizer, A., Berger, E. G., Hauri, H.-P., Yuan, L. C., & Klausner, R. D. (1990) · Cell · doi:10.1016/0092-8674(90)90096-w · Cited by 967
Stacks on tracks: the plant Golgi apparatus traffics on an actin/ER network†
Boevink, P., Oparka, K., Cruz, S. S., Martin, B., Betteridge, A., & Hawes, C. (1998) · The Plant Journal · doi:10.1046/j.1365-313x.1998.00208.x · Cited by 812
Coordinated Polar Localization of Auxin Efflux Carrier PIN1 by GNOM ARF GEF
Steinmann, T., Geldner, N., Grebe, M., Mangold, S., Jackson, C. L., Paris, S., Gälweiler, L., Palme, K., & Jürgens, G. (1999) · Science · doi:10.1126/science.286.5438.316 · Cited by 761
A genomic perspective on membrane compartment organization
Bock, J. B., Matern, H. T., Peden, A. A., & Scheller, R. H. (2001) · Nature · doi:10.1038/35057024 · Cited by 696
Cytokinesis in the Arabidopsis Embryo Involves the Syntaxin-Related KNOLLE Gene Product
Lukowitz, W., Mayer, U., & Jürgens, G. (1996) · Cell · doi:10.1016/s0092-8674(00)80993-9 · Cited by 509
The Arabidopsis KNOLLE Protein Is a Cytokinesis-specific Syntaxin
Lauber, M. H., Waizenegger, I., Steinmann, T., Schwarz, H., Mayer, U., Hwang, I., Lukowitz, W., & Jürgens, G. (1997) · The Journal of Cell Biology · doi:10.1083/jcb.139.6.1485 · Cited by 495
Ueda, T. (2001) · The EMBO Journal · doi:10.1093/emboj/20.17.4730 · Cited by 492
Self-citationBrefeldin A: Deciphering an Enigmatic Inhibitor of Secretion
Nebenführ, A., Ritzenthaler, C., & Robinson, D. G. (2002) · Plant Physiology · doi:10.1104/pp.011569 · Cited by 485
Tse, Y. C., Mo, B., Hillmer, S., Zhao, M., Lo, S. W., Robinson, D. G., & Jiang, L. (2004) · The Plant Cell · doi:10.1105/tpc.019703 · Cited by 405
Schindelman, G., Morikami, A., Jung, J., Baskin, T. I., Carpita, N. C., Derbyshire, P., McCann, M. C., & Benfey, P. N. (2001) · Genes & Development · doi:10.1101/gad.879101 · Cited by 396
Ritzenthaler, C., Nebenführ, A., Movafeghi, A., Stussi-Garaud, C., Behnia, L., Pimpl, P., Staehelin, L. A., & Robinson, D. G. (2002) · The Plant Cell · doi:10.1105/tpc.010237 · Cited by 334
Sanderfoot, A. A., Assaad, F. F., & Raikhel, N. V. (2000) · Plant Physiology · doi:10.1104/pp.124.4.1558 · Cited by 309
Crystal structure of the endosomal SNARE complex reveals common structural principles of all SNAREs
Antonin, W., Fasshauer, D., Becker, S., Jahn, R., & Schneider, T. R. (2002) · Nature Structural Biology · doi:10.1038/nsb746 · Cited by 309
Sanderfoot, A. A., Kovaleva, V., Bassham, D. C., & Raikhel, N. V. (2001) · Molecular Biology of the Cell · doi:10.1091/mbc.12.12.3733 · Cited by 258
Matsuoka, K., Bassham, D. C., Raikhel, N. V., & Nakamura, K. (1995) · The Journal of cell biology · doi:10.1083/jcb.130.6.1307 · Cited by 256
Ykt6p, a Prenylated SNARE Essential for Endoplasmic Reticulum-Golgi Transport
McNew, J. A., Søgaard, M., Lampen, N. M., Machida, S., Ye, R. R., Lacomis, L., Tempst, P., Rothman, J. E., & Söllner, T. H. (1997) · Journal of Biological Chemistry · doi:10.1074/jbc.272.28.17776 · Cited by 247
A Tobacco Syntaxin with a Role in Hormonal Control of Guard Cell Ion Channels
Leyman, B., Geelen, D., Quintero, F. J., & Blatt, M. R. (1999) · Science · doi:10.1126/science.283.5401.537 · Cited by 242
The Debate about Transport in the Golgi—Two Sides of the Same Coin?
Pelham, H. R. B., & Rothman, J. E. (2000) · Cell · doi:10.1016/s0092-8674(00)00060-x · Cited by 239
Kato, T., Morita, M. T., Fukaki, H., Yamauchi, Y., Uehara, M., Niihama, M., & Tasaka, M. (2002) · The Plant Cell · doi:10.1105/tpc.010215 · Cited by 235
Spinning-disk Confocal Microscopy. A Cutting-Edge Tool for Imaging of Membrane Traffic.
Nakano, A. (2002) · Cell Structure and Function · doi:10.1247/csf.27.349 · Cited by 223
Self-citationTraffic jams affect plant development and signal transduction
Surpin, M., & Raikhel, N. (2004) · Nature Reviews Molecular Cell Biology · doi:10.1038/nrm1311 · Cited by 221
Zhu, J., Gong, Z., Zhang, C., Song, C.-P., Damsz, B., Inan, G., Koiwa, H., Zhu, J.-K., Hasegawa, P. M., & Bressan, R. A. (2002) · The Plant Cell · doi:10.1105/tpc.006981 · Cited by 221
Morita, M. T., Kato, T., Nagafusa, K., Saito, C., Ueda, T., Nakano, A., & Tasaka, M. (2002) · The Plant Cell · doi:10.1105/tpc.010216 · Cited by 219
Self-citationThree Novel Proteins of the Syntaxin/SNAP-25 Family
Steegmaier, M., Yang, B., Yoo, J.-S., Huang, B., Shen, M., Yu, S., Luo, Y., & Scheller, R. H. (1998) · Journal of Biological Chemistry · doi:10.1074/jbc.273.51.34171 · Cited by 205
Yano, D., Sato, M., Saito, C., Sato, M. H., Morita, M. T., & Tasaka, M. (2003) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.1430749100 · Cited by 191
Self-citationThe COBRA Family of Putative GPI-Anchored Proteins in Arabidopsis. A New Fellowship in Expansion
Roudier, F., Schindelman, G., DeSalle, R., & Benfey, P. N. (2002) · Plant Physiology · doi:10.1104/pp.007468 · Cited by 181
Transport of storage proteins to the vacuole is mediated by vesicles without a clathrin coat
Hohl, I., Robinson, D. G., Chrispeels, M. J., & Hinz, G. (1996) · Journal of Cell Science · doi:10.1242/jcs.109.10.2539 · Cited by 174
AtVPS45 Complex Formation at thetrans-Golgi Network
Bassham, D. C., Sanderfoot, A. A., Kovaleva, V. A., Zheng, H., & Raikhel, N. V. (2000) · Molecular Biology of the Cell · doi:10.1091/mbc.11.7.2251 · Cited by 157
The Abscisic Acid–Related SNARE Homolog NtSyr1 Contributes to Secretion and Growth
Geelen, D., Leyman, B., Batoko, H., et al. (2002) · The Plant Cell · doi:10.1105/tpc.010328 · Cited by 153
Localization and activity of the SNARE Ykt6 determined by its regulatory domain and palmitoylation
Fukasawa, M., Varlamov, O., Eng, W. S., et al. (2004) · Proceedings of the National Academy of Sciences · doi:10.1073/pnas.0401183101 · Cited by 150
The Syntaxin Homolog AtPEP12p Resides on a Late Post-Golgi Compartment in Plants
Conceição, A. D. S., Marty‐Mazars, D., Bassham, D. C., Sanderfoot, A. A., Marty, F., & Raikhel, N. V. (1997) · The Plant Cell · doi:10.1105/tpc.9.4.571 · Cited by 143
Variations on the Intracellular Transport Theme: Maturing Cisternae and Trafficking Tubules
Aa, M., Weidman, P. J., & Luini, A. (1997) · The Journal of Cell Biology · doi:10.1083/jcb.138.3.481 · Cited by 141
Pratelli, R., Sutter, J., & Blatt, M. R. (2004) · Trends in Plant Science · doi:10.1016/j.tplants.2004.02.007 · Cited by 124
SNAP-25 Is Targeted to the Plasma Membrane through a Novel Membrane-binding Domain
Gonzalo, S., Greentree, W. K., & Linder, M. E. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.30.21313 · Cited by 123
Vacuolar membrane dynamics revealed by GFP‐AtVam3 fusion protein
Uemura, T., Yoshimura, S. H., Takeyasu, K., & Sato, M. H. (2002) · Genes to Cells · doi:10.1046/j.1365-2443.2002.00550.x · Cited by 110
Self-citationBulbarelli, A., Sprocati, T., Barberi, M., Pedrazzini, E., & Borgese, N. (2002) · Journal of Cell Science · doi:10.1242/jcs.115.8.1689 · Cited by 75
Identification of the Endoplasmic Reticulum Targeting Signal in Vesicle-associated Membrane Proteins
Kim, P. K., Hollerbach, C., Trimble, W. S., Leber, B. F., & Andrews, D. W. (1999) · Journal of Biological Chemistry · doi:10.1074/jbc.274.52.36876 · Cited by 51
Kasai, K., & Akagawa, K. (2001) · Journal of Cell Science · doi:10.1242/jcs.114.17.3115 · Cited by 49
Protein localization in the plant Golgi apparatus and the trans -Golgi network
Saint‐Jore‐Dupas, C., Gomord, V., & Paris, N. (2004) · Cellular and Molecular Life Sciences · doi:10.1007/s00018-003-3354-7 · Cited by 40
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Nelson, B. K., Cai, X., & Nebenführ, A. (2007) · The Plant Journal · doi:10.1111/j.1365-313x.2007.03212.x · Cited by 2,083
Vacuolar H+-ATPase Activity Is Required for Endocytic and Secretory Trafficking in Arabidopsis
Dettmer, J., Hong-Hermesdorf, A., Stierhof, Y.-D., & Schumacher, K. (2006) · The Plant Cell · doi:10.1105/tpc.105.037978 · Cited by 852
Gutierrez, R., Lindeboom, J. J., Paredez, A. R., Emons, A. M. C., & Ehrhardt, D. W. (2009) · Nature Cell Biology · doi:10.1038/ncb1886 · Cited by 674
Shockey, J. M., Gidda, S. K., Chapital, D. C., Kuan, J.-C., Dhanoa, P. K., Bland, J. M., Rothstein, S. J., Mullen, R. T., & Dyer, J. M. (2006) · The Plant Cell · doi:10.1105/tpc.106.043695 · Cited by 585
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Metadata
- Authors
- Uemura, T., Ueda, T., Ohniwa, R. L., Nakano, A., Takeyasu, K., & Sato, M. H.
- Venue
- Cell Structure and Function
- Publisher
- Japan Society for Cell Biology
- Published
- 2004
- Volume
- 29
- Issue
- 2
- Pages
- 49-65
- ISSN
- 0386-7196 (ISSN-L)
- 1347-3700
- OpenAlex
- W2068417946
- Cited by
- 532
- References
- 60
- FWCI
- 9.62
- Type
- journal article
- Language
- en
- Open access
- bronze
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